Strain Fitness in Serratia liquefaciens MT49 around IAI46_03710

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03700 and IAI46_03705 are separated by 275 nucleotidesIAI46_03705 and IAI46_03710 are separated by 187 nucleotidesIAI46_03710 and IAI46_03715 are separated by 9 nucleotidesIAI46_03715 and IAI46_03720 are separated by 11 nucleotides IAI46_03700: IAI46_03700 - aminopeptidase, at 807,491 to 808,567 _03700 IAI46_03705: IAI46_03705 - hypothetical protein, at 808,843 to 809,109 _03705 IAI46_03710: IAI46_03710 - uroporphyrinogen-III C-methyltransferase, at 809,297 to 810,727 _03710 IAI46_03715: IAI46_03715 - sulfate adenylyltransferase subunit CysD, at 810,737 to 811,645 _03715 IAI46_03720: IAI46_03720 - sulfate adenylyltransferase subunit CysN, at 811,657 to 813,084 _03720 Position (kb) 809 810 811Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 808.305 kb on + strand, within IAI46_03700at 808.306 kb on - strand, within IAI46_03700at 808.622 kb on + strandat 808.623 kb on - strandat 808.643 kb on - strandat 808.643 kb on - strandat 808.757 kb on + strandat 808.757 kb on + strandat 808.757 kb on + strandat 808.758 kb on - strandat 808.760 kb on + strandat 808.760 kb on + strandat 808.773 kb on - strandat 808.776 kb on + strandat 808.776 kb on + strandat 808.776 kb on + strandat 808.777 kb on - strandat 808.777 kb on - strandat 808.777 kb on - strandat 808.789 kb on - strandat 808.789 kb on - strandat 808.789 kb on - strandat 808.799 kb on - strandat 808.894 kb on + strand, within IAI46_03705at 808.895 kb on - strand, within IAI46_03705at 808.895 kb on - strand, within IAI46_03705at 808.911 kb on + strand, within IAI46_03705at 808.911 kb on + strand, within IAI46_03705at 808.979 kb on + strand, within IAI46_03705at 808.983 kb on + strand, within IAI46_03705at 808.984 kb on - strand, within IAI46_03705at 808.984 kb on - strand, within IAI46_03705at 808.984 kb on - strand, within IAI46_03705at 808.984 kb on - strand, within IAI46_03705at 808.984 kb on - strand, within IAI46_03705at 809.018 kb on + strand, within IAI46_03705at 809.025 kb on + strand, within IAI46_03705at 809.025 kb on + strand, within IAI46_03705at 809.025 kb on + strand, within IAI46_03705at 809.059 kb on - strand, within IAI46_03705at 809.141 kb on + strandat 809.141 kb on + strandat 809.142 kb on - strandat 809.167 kb on + strandat 809.167 kb on + strandat 809.199 kb on - strandat 809.207 kb on - strandat 809.214 kb on + strandat 809.215 kb on - strandat 809.215 kb on - strandat 809.215 kb on - strandat 809.258 kb on - strandat 809.258 kb on - strandat 809.259 kb on + strandat 809.260 kb on - strandat 809.260 kb on - strandat 809.268 kb on + strandat 809.268 kb on + strandat 809.268 kb on + strandat 809.280 kb on + strandat 809.281 kb on - strandat 809.281 kb on - strandat 809.281 kb on - strandat 809.282 kb on + strandat 809.282 kb on + strandat 809.282 kb on + strandat 809.283 kb on - strandat 809.283 kb on - strandat 809.283 kb on - strandat 809.303 kb on + strandat 809.303 kb on + strandat 809.303 kb on + strandat 809.304 kb on - strandat 809.304 kb on - strandat 809.304 kb on - strandat 809.307 kb on + strandat 809.307 kb on + strandat 809.307 kb on + strandat 809.308 kb on - strandat 809.308 kb on - strandat 809.308 kb on - strandat 809.308 kb on - strandat 809.311 kb on + strandat 809.311 kb on + strandat 809.311 kb on + strandat 809.312 kb on - strandat 809.314 kb on - strandat 809.409 kb on + strandat 809.410 kb on - strandat 809.410 kb on - strandat 809.415 kb on + strandat 809.416 kb on - strandat 809.707 kb on + strand, within IAI46_03710at 809.707 kb on + strand, within IAI46_03710at 809.707 kb on + strand, within IAI46_03710at 809.707 kb on + strand, within IAI46_03710at 809.707 kb on + strand, within IAI46_03710at 810.045 kb on - strand, within IAI46_03710at 810.370 kb on + strand, within IAI46_03710at 810.370 kb on + strand, within IAI46_03710at 810.371 kb on - strand, within IAI46_03710at 810.449 kb on + strand, within IAI46_03710at 810.449 kb on + strand, within IAI46_03710at 810.449 kb on + strand, within IAI46_03710at 810.449 kb on + strand, within IAI46_03710at 810.450 kb on - strand, within IAI46_03710at 810.450 kb on - strand, within IAI46_03710at 810.450 kb on - strand, within IAI46_03710at 810.450 kb on - strand, within IAI46_03710at 810.492 kb on + strand, within IAI46_03710at 810.643 kb on - strandat 810.725 kb on + strandat 810.726 kb on - strandat 810.737 kb on - strandat 810.784 kb on + strandat 810.784 kb on + strandat 810.784 kb on + strandat 810.785 kb on - strandat 810.785 kb on - strandat 810.790 kb on + strandat 810.790 kb on + strandat 810.790 kb on + strandat 810.791 kb on - strandat 810.791 kb on - strandat 810.791 kb on - strandat 810.791 kb on - strandat 810.791 kb on - strandat 810.836 kb on + strand, within IAI46_03715at 810.837 kb on - strand, within IAI46_03715at 810.837 kb on - strand, within IAI46_03715at 810.881 kb on - strand, within IAI46_03715at 811.066 kb on + strand, within IAI46_03715at 811.066 kb on + strand, within IAI46_03715at 811.112 kb on + strand, within IAI46_03715at 811.177 kb on + strand, within IAI46_03715at 811.177 kb on + strand, within IAI46_03715at 811.178 kb on - strand, within IAI46_03715at 811.178 kb on - strand, within IAI46_03715at 811.181 kb on + strand, within IAI46_03715at 811.181 kb on + strand, within IAI46_03715at 811.247 kb on + strand, within IAI46_03715at 811.247 kb on + strand, within IAI46_03715at 811.248 kb on - strand, within IAI46_03715at 811.316 kb on - strand, within IAI46_03715at 811.361 kb on + strand, within IAI46_03715at 811.362 kb on - strand, within IAI46_03715at 811.362 kb on - strand, within IAI46_03715at 811.386 kb on + strand, within IAI46_03715at 811.387 kb on - strand, within IAI46_03715at 811.426 kb on + strand, within IAI46_03715at 811.638 kb on - strandat 811.708 kb on + strandat 811.708 kb on + strandat 811.709 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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808,305 + IAI46_03700 0.76 -1.1
808,306 - IAI46_03700 0.76 -0.0
808,622 + -0.8
808,623 - -2.5
808,643 - +0.2
808,643 - -0.3
808,757 + +0.8
808,757 + +1.1
808,757 + -1.7
808,758 - +0.8
808,760 + +0.8
808,760 + +0.9
808,773 - -0.7
808,776 + +0.4
808,776 + -1.2
808,776 + -1.5
808,777 - -0.9
808,777 - +0.5
808,777 - -2.9
808,789 - +1.1
808,789 - +0.8
808,789 - +1.4
808,799 - -0.7
808,894 + IAI46_03705 0.19 +0.1
808,895 - IAI46_03705 0.19 +0.1
808,895 - IAI46_03705 0.19 -0.3
808,911 + IAI46_03705 0.25 -0.7
808,911 + IAI46_03705 0.25 -1.9
808,979 + IAI46_03705 0.51 -0.9
808,983 + IAI46_03705 0.52 +1.5
808,984 - IAI46_03705 0.53 +1.9
808,984 - IAI46_03705 0.53 -2.9
808,984 - IAI46_03705 0.53 -2.9
808,984 - IAI46_03705 0.53 +0.4
808,984 - IAI46_03705 0.53 -0.0
809,018 + IAI46_03705 0.66 +0.5
809,025 + IAI46_03705 0.68 +1.8
809,025 + IAI46_03705 0.68 -0.6
809,025 + IAI46_03705 0.68 -0.5
809,059 - IAI46_03705 0.81 +0.4
809,141 + -0.6
809,141 + +0.2
809,142 - -1.2
809,167 + -0.0
809,167 + -0.7
809,199 - -1.5
809,207 - -2.7
809,214 + -0.8
809,215 - -1.7
809,215 - -1.0
809,215 - -3.5
809,258 - -1.5
809,258 - +0.8
809,259 + -0.9
809,260 - -3.2
809,260 - -2.6
809,268 + -1.4
809,268 + -1.8
809,268 + +0.4
809,280 + -1.0
809,281 - +0.5
809,281 - -1.7
809,281 - -0.6
809,282 + +0.2
809,282 + +0.1
809,282 + -0.6
809,283 - -2.4
809,283 - -2.0
809,283 - -1.9
809,303 + -2.1
809,303 + +0.7
809,303 + +0.7
809,304 - -2.9
809,304 - +0.6
809,304 - -2.8
809,307 + -2.3
809,307 + +1.5
809,307 + -2.3
809,308 - -0.3
809,308 - -1.2
809,308 - -1.2
809,308 - -1.2
809,311 + -0.3
809,311 + +0.2
809,311 + +0.3
809,312 - -0.6
809,314 - -3.1
809,409 + -0.8
809,410 - -3.7
809,410 - -0.8
809,415 + -1.8
809,416 - -3.5
809,707 + IAI46_03710 0.29 +1.2
809,707 + IAI46_03710 0.29 -2.4
809,707 + IAI46_03710 0.29 -3.6
809,707 + IAI46_03710 0.29 +0.0
809,707 + IAI46_03710 0.29 -1.5
810,045 - IAI46_03710 0.52 -3.7
810,370 + IAI46_03710 0.75 -0.0
810,370 + IAI46_03710 0.75 -0.8
810,371 - IAI46_03710 0.75 +0.2
810,449 + IAI46_03710 0.81 +0.1
810,449 + IAI46_03710 0.81 -0.6
810,449 + IAI46_03710 0.81 -3.0
810,449 + IAI46_03710 0.81 -0.2
810,450 - IAI46_03710 0.81 +0.4
810,450 - IAI46_03710 0.81 -1.4
810,450 - IAI46_03710 0.81 -1.6
810,450 - IAI46_03710 0.81 -3.4
810,492 + IAI46_03710 0.84 +0.1
810,643 - -1.3
810,725 + -3.1
810,726 - -1.8
810,737 - -3.4
810,784 + -1.5
810,784 + -2.1
810,784 + -2.1
810,785 - -3.2
810,785 - +0.9
810,790 + -3.5
810,790 + -3.7
810,790 + -1.4
810,791 - -1.4
810,791 - -0.9
810,791 - -1.0
810,791 - +0.2
810,791 - -4.4
810,836 + IAI46_03715 0.11 -3.7
810,837 - IAI46_03715 0.11 -2.6
810,837 - IAI46_03715 0.11 -2.1
810,881 - IAI46_03715 0.16 -2.2
811,066 + IAI46_03715 0.36 -2.8
811,066 + IAI46_03715 0.36 -1.7
811,112 + IAI46_03715 0.41 -0.6
811,177 + IAI46_03715 0.48 -2.5
811,177 + IAI46_03715 0.48 -0.9
811,178 - IAI46_03715 0.49 -1.1
811,178 - IAI46_03715 0.49 -2.4
811,181 + IAI46_03715 0.49 -4.6
811,181 + IAI46_03715 0.49 -2.2
811,247 + IAI46_03715 0.56 -4.1
811,247 + IAI46_03715 0.56 -1.6
811,248 - IAI46_03715 0.56 -2.3
811,316 - IAI46_03715 0.64 -3.4
811,361 + IAI46_03715 0.69 -1.6
811,362 - IAI46_03715 0.69 -3.4
811,362 - IAI46_03715 0.69 -1.4
811,386 + IAI46_03715 0.71 -1.5
811,387 - IAI46_03715 0.72 -2.5
811,426 + IAI46_03715 0.76 -1.2
811,638 - -0.3
811,708 + -3.0
811,708 + -4.0
811,709 - -3.7

Or see this region's nucleotide sequence