Strain Fitness in Serratia liquefaciens MT49 around IAI46_02910

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02905 and IAI46_02910 are separated by 366 nucleotidesIAI46_02910 and IAI46_02915 are separated by 68 nucleotides IAI46_02905: IAI46_02905 - NupC/NupG family nucleoside CNT transporter, at 619,374 to 620,639 _02905 IAI46_02910: IAI46_02910 - deoxyribose-phosphate aldolase, at 621,006 to 621,785 _02910 IAI46_02915: IAI46_02915 - thymidine phosphorylase, at 621,854 to 623,176 _02915 Position (kb) 621 622Strain fitness (log2 ratio) -2 -1 0 1 2at 620.175 kb on - strand, within IAI46_02905at 620.257 kb on + strand, within IAI46_02905at 620.258 kb on - strand, within IAI46_02905at 620.355 kb on - strand, within IAI46_02905at 620.370 kb on + strand, within IAI46_02905at 620.370 kb on + strand, within IAI46_02905at 620.370 kb on + strand, within IAI46_02905at 620.371 kb on - strand, within IAI46_02905at 620.371 kb on - strand, within IAI46_02905at 620.691 kb on + strandat 620.693 kb on + strandat 620.694 kb on - strandat 620.694 kb on - strandat 620.698 kb on + strandat 620.698 kb on + strandat 620.699 kb on - strandat 620.699 kb on - strandat 620.817 kb on + strandat 620.818 kb on - strandat 620.866 kb on + strandat 620.866 kb on + strandat 620.866 kb on + strandat 620.866 kb on + strandat 620.869 kb on + strandat 620.870 kb on - strandat 620.870 kb on - strandat 620.870 kb on - strandat 620.870 kb on - strandat 620.895 kb on + strandat 620.895 kb on + strandat 620.896 kb on - strandat 620.949 kb on + strandat 621.047 kb on - strandat 621.132 kb on - strand, within IAI46_02910at 621.147 kb on - strand, within IAI46_02910at 621.147 kb on - strand, within IAI46_02910at 621.361 kb on - strand, within IAI46_02910at 621.461 kb on + strand, within IAI46_02910at 621.512 kb on + strand, within IAI46_02910at 621.512 kb on + strand, within IAI46_02910at 621.648 kb on + strand, within IAI46_02910at 621.649 kb on - strand, within IAI46_02910at 621.649 kb on - strand, within IAI46_02910at 621.791 kb on + strandat 621.809 kb on + strandat 621.809 kb on + strandat 621.829 kb on - strandat 621.829 kb on - strandat 621.829 kb on - strandat 621.829 kb on - strandat 621.834 kb on - strandat 621.837 kb on + strandat 621.880 kb on + strandat 621.938 kb on - strandat 621.993 kb on - strand, within IAI46_02915at 621.993 kb on - strand, within IAI46_02915at 622.003 kb on + strand, within IAI46_02915at 622.003 kb on + strand, within IAI46_02915at 622.003 kb on + strand, within IAI46_02915at 622.004 kb on - strand, within IAI46_02915at 622.004 kb on - strand, within IAI46_02915at 622.175 kb on + strand, within IAI46_02915at 622.211 kb on - strand, within IAI46_02915at 622.220 kb on - strand, within IAI46_02915at 622.252 kb on + strand, within IAI46_02915at 622.253 kb on - strand, within IAI46_02915at 622.253 kb on - strand, within IAI46_02915at 622.255 kb on + strand, within IAI46_02915at 622.256 kb on - strand, within IAI46_02915at 622.256 kb on - strand, within IAI46_02915at 622.256 kb on - strand, within IAI46_02915at 622.256 kb on - strand, within IAI46_02915at 622.256 kb on - strand, within IAI46_02915at 622.256 kb on - strand, within IAI46_02915at 622.355 kb on + strand, within IAI46_02915at 622.356 kb on - strand, within IAI46_02915at 622.356 kb on - strand, within IAI46_02915at 622.356 kb on - strand, within IAI46_02915at 622.356 kb on - strand, within IAI46_02915at 622.370 kb on - strand, within IAI46_02915at 622.378 kb on + strand, within IAI46_02915at 622.379 kb on - strand, within IAI46_02915at 622.411 kb on + strand, within IAI46_02915at 622.411 kb on + strand, within IAI46_02915at 622.412 kb on - strand, within IAI46_02915at 622.484 kb on - strand, within IAI46_02915at 622.484 kb on - strand, within IAI46_02915at 622.493 kb on + strand, within IAI46_02915at 622.493 kb on + strand, within IAI46_02915at 622.493 kb on + strand, within IAI46_02915at 622.493 kb on + strand, within IAI46_02915at 622.493 kb on + strand, within IAI46_02915at 622.534 kb on - strand, within IAI46_02915at 622.671 kb on + strand, within IAI46_02915at 622.671 kb on + strand, within IAI46_02915at 622.775 kb on - strand, within IAI46_02915

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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620,175 - IAI46_02905 0.63 +0.2
620,257 + IAI46_02905 0.70 -0.6
620,258 - IAI46_02905 0.70 +0.1
620,355 - IAI46_02905 0.77 +0.9
620,370 + IAI46_02905 0.79 +0.9
620,370 + IAI46_02905 0.79 +1.0
620,370 + IAI46_02905 0.79 +2.1
620,371 - IAI46_02905 0.79 +0.6
620,371 - IAI46_02905 0.79 -0.6
620,691 + -1.3
620,693 + +0.2
620,694 - +0.5
620,694 - +0.4
620,698 + -0.2
620,698 + +0.6
620,699 - +1.1
620,699 - -1.4
620,817 + -2.0
620,818 - +0.8
620,866 + +0.6
620,866 + -1.5
620,866 + +1.2
620,866 + +1.2
620,869 + -0.5
620,870 - -0.9
620,870 - +1.0
620,870 - +0.2
620,870 - -0.6
620,895 + -1.0
620,895 + -2.2
620,896 - -2.4
620,949 + -0.5
621,047 - +0.5
621,132 - IAI46_02910 0.16 -0.0
621,147 - IAI46_02910 0.18 -0.1
621,147 - IAI46_02910 0.18 -0.8
621,361 - IAI46_02910 0.46 +0.7
621,461 + IAI46_02910 0.58 -1.9
621,512 + IAI46_02910 0.65 +1.8
621,512 + IAI46_02910 0.65 +1.8
621,648 + IAI46_02910 0.82 -2.6
621,649 - IAI46_02910 0.82 +0.4
621,649 - IAI46_02910 0.82 -0.4
621,791 + +0.1
621,809 + +1.7
621,809 + -1.4
621,829 - +0.1
621,829 - +0.4
621,829 - +1.3
621,829 - +0.2
621,834 - +0.0
621,837 + -1.8
621,880 + -2.0
621,938 - -0.3
621,993 - IAI46_02915 0.11 -0.1
621,993 - IAI46_02915 0.11 -0.4
622,003 + IAI46_02915 0.11 +1.4
622,003 + IAI46_02915 0.11 +0.7
622,003 + IAI46_02915 0.11 +0.4
622,004 - IAI46_02915 0.11 +1.3
622,004 - IAI46_02915 0.11 -0.9
622,175 + IAI46_02915 0.24 +0.0
622,211 - IAI46_02915 0.27 -0.6
622,220 - IAI46_02915 0.28 -1.1
622,252 + IAI46_02915 0.30 -0.8
622,253 - IAI46_02915 0.30 +0.5
622,253 - IAI46_02915 0.30 +0.9
622,255 + IAI46_02915 0.30 +0.1
622,256 - IAI46_02915 0.30 -0.1
622,256 - IAI46_02915 0.30 -0.7
622,256 - IAI46_02915 0.30 +1.3
622,256 - IAI46_02915 0.30 -1.9
622,256 - IAI46_02915 0.30 -0.1
622,256 - IAI46_02915 0.30 +0.2
622,355 + IAI46_02915 0.38 +1.7
622,356 - IAI46_02915 0.38 -1.6
622,356 - IAI46_02915 0.38 +0.0
622,356 - IAI46_02915 0.38 +0.7
622,356 - IAI46_02915 0.38 -2.0
622,370 - IAI46_02915 0.39 -0.9
622,378 + IAI46_02915 0.40 -0.7
622,379 - IAI46_02915 0.40 +0.5
622,411 + IAI46_02915 0.42 +0.8
622,411 + IAI46_02915 0.42 +0.4
622,412 - IAI46_02915 0.42 -1.6
622,484 - IAI46_02915 0.48 +1.0
622,484 - IAI46_02915 0.48 +0.4
622,493 + IAI46_02915 0.48 +0.4
622,493 + IAI46_02915 0.48 -0.2
622,493 + IAI46_02915 0.48 -2.7
622,493 + IAI46_02915 0.48 +0.6
622,493 + IAI46_02915 0.48 -1.7
622,534 - IAI46_02915 0.51 -1.0
622,671 + IAI46_02915 0.62 +1.8
622,671 + IAI46_02915 0.62 +0.4
622,775 - IAI46_02915 0.70 +0.8

Or see this region's nucleotide sequence