Strain Fitness in Serratia liquefaciens MT49 around IAI46_02540

Experiment: Cadmium acetate 40 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_02535 and IAI46_02540 are separated by 256 nucleotidesIAI46_02540 and IAI46_02545 are separated by 12 nucleotidesIAI46_02545 and IAI46_02550 are separated by 67 nucleotides IAI46_02535: IAI46_02535 - LysR family transcriptional regulator, at 546,497 to 547,405 _02535 IAI46_02540: IAI46_02540 - GTPase, at 547,662 to 548,624 _02540 IAI46_02545: IAI46_02545 - YbdD/YjiX family protein, at 548,637 to 548,840 _02545 IAI46_02550: IAI46_02550 - carbon starvation protein A, at 548,908 to 551,088 _02550 Position (kb) 547 548 549Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 546.713 kb on + strand, within IAI46_02535at 546.736 kb on + strand, within IAI46_02535at 546.736 kb on + strand, within IAI46_02535at 546.737 kb on - strand, within IAI46_02535at 546.737 kb on - strand, within IAI46_02535at 546.743 kb on + strand, within IAI46_02535at 546.743 kb on + strand, within IAI46_02535at 546.743 kb on + strand, within IAI46_02535at 546.744 kb on - strand, within IAI46_02535at 546.744 kb on - strand, within IAI46_02535at 546.745 kb on + strand, within IAI46_02535at 546.745 kb on + strand, within IAI46_02535at 546.746 kb on - strand, within IAI46_02535at 546.787 kb on - strand, within IAI46_02535at 546.787 kb on - strand, within IAI46_02535at 546.787 kb on - strand, within IAI46_02535at 546.809 kb on + strand, within IAI46_02535at 546.810 kb on - strand, within IAI46_02535at 546.810 kb on - strand, within IAI46_02535at 546.821 kb on - strand, within IAI46_02535at 546.821 kb on - strand, within IAI46_02535at 546.821 kb on - strand, within IAI46_02535at 546.821 kb on - strand, within IAI46_02535at 546.821 kb on - strand, within IAI46_02535at 546.894 kb on + strand, within IAI46_02535at 546.894 kb on + strand, within IAI46_02535at 546.895 kb on - strand, within IAI46_02535at 546.895 kb on - strand, within IAI46_02535at 546.934 kb on + strand, within IAI46_02535at 546.934 kb on + strand, within IAI46_02535at 546.934 kb on + strand, within IAI46_02535at 546.934 kb on + strand, within IAI46_02535at 546.934 kb on + strand, within IAI46_02535at 546.934 kb on + strand, within IAI46_02535at 546.934 kb on + strand, within IAI46_02535at 546.934 kb on + strand, within IAI46_02535at 546.934 kb on + strand, within IAI46_02535at 546.935 kb on - strand, within IAI46_02535at 546.935 kb on - strand, within IAI46_02535at 546.935 kb on - strand, within IAI46_02535at 546.954 kb on + strand, within IAI46_02535at 546.954 kb on + strand, within IAI46_02535at 546.954 kb on + strand, within IAI46_02535at 546.955 kb on - strand, within IAI46_02535at 546.955 kb on - strand, within IAI46_02535at 547.034 kb on + strand, within IAI46_02535at 547.035 kb on - strand, within IAI46_02535at 547.054 kb on + strand, within IAI46_02535at 547.054 kb on + strand, within IAI46_02535at 547.054 kb on + strand, within IAI46_02535at 547.055 kb on - strand, within IAI46_02535at 547.165 kb on + strand, within IAI46_02535at 547.165 kb on + strand, within IAI46_02535at 547.165 kb on + strand, within IAI46_02535at 547.166 kb on - strand, within IAI46_02535at 547.166 kb on - strand, within IAI46_02535at 547.166 kb on - strand, within IAI46_02535at 547.178 kb on + strand, within IAI46_02535at 547.200 kb on + strand, within IAI46_02535at 547.290 kb on - strand, within IAI46_02535at 547.320 kb on + strandat 547.320 kb on + strandat 547.321 kb on - strandat 547.379 kb on - strandat 547.379 kb on - strandat 547.395 kb on + strandat 547.399 kb on + strandat 547.399 kb on + strandat 547.400 kb on - strandat 547.400 kb on - strandat 547.482 kb on + strandat 547.483 kb on - strandat 547.521 kb on + strandat 547.522 kb on - strandat 547.522 kb on - strandat 547.596 kb on + strandat 547.596 kb on + strandat 547.596 kb on + strandat 547.596 kb on + strandat 547.596 kb on + strandat 547.597 kb on - strandat 547.658 kb on - strandat 547.663 kb on + strandat 547.664 kb on - strandat 547.664 kb on - strandat 547.711 kb on - strandat 547.780 kb on + strand, within IAI46_02540at 547.780 kb on + strand, within IAI46_02540at 547.780 kb on + strand, within IAI46_02540at 547.780 kb on + strand, within IAI46_02540at 547.780 kb on + strand, within IAI46_02540at 547.781 kb on - strand, within IAI46_02540at 547.781 kb on - strand, within IAI46_02540at 547.792 kb on - strand, within IAI46_02540at 547.804 kb on - strand, within IAI46_02540at 547.844 kb on + strand, within IAI46_02540at 547.845 kb on - strand, within IAI46_02540at 547.845 kb on - strand, within IAI46_02540at 547.846 kb on + strand, within IAI46_02540at 547.847 kb on - strand, within IAI46_02540at 547.847 kb on - strand, within IAI46_02540at 547.847 kb on - strand, within IAI46_02540at 547.867 kb on + strand, within IAI46_02540at 547.930 kb on + strand, within IAI46_02540at 547.931 kb on - strand, within IAI46_02540at 547.949 kb on + strand, within IAI46_02540at 547.950 kb on - strand, within IAI46_02540at 548.075 kb on + strand, within IAI46_02540at 548.076 kb on - strand, within IAI46_02540at 548.077 kb on + strand, within IAI46_02540at 548.373 kb on + strand, within IAI46_02540at 548.373 kb on + strand, within IAI46_02540at 548.556 kb on - strandat 548.562 kb on + strandat 548.562 kb on + strandat 548.562 kb on + strandat 548.635 kb on + strandat 548.635 kb on + strandat 548.635 kb on + strandat 548.638 kb on + strandat 548.639 kb on - strandat 548.711 kb on - strand, within IAI46_02545at 548.711 kb on - strand, within IAI46_02545at 548.711 kb on - strand, within IAI46_02545at 548.711 kb on - strand, within IAI46_02545at 548.711 kb on - strand, within IAI46_02545at 548.711 kb on - strand, within IAI46_02545at 548.711 kb on - strand, within IAI46_02545at 548.711 kb on - strand, within IAI46_02545at 548.711 kb on - strand, within IAI46_02545at 548.758 kb on + strand, within IAI46_02545at 548.758 kb on + strand, within IAI46_02545at 548.758 kb on + strand, within IAI46_02545at 548.759 kb on - strand, within IAI46_02545at 548.759 kb on - strand, within IAI46_02545at 548.762 kb on + strand, within IAI46_02545at 548.762 kb on + strand, within IAI46_02545at 548.763 kb on - strand, within IAI46_02545at 548.763 kb on - strand, within IAI46_02545at 548.809 kb on + strand, within IAI46_02545at 548.899 kb on - strandat 548.944 kb on + strandat 548.944 kb on + strandat 548.944 kb on + strandat 548.982 kb on - strandat 549.015 kb on + strandat 549.059 kb on + strandat 549.059 kb on + strandat 549.059 kb on + strandat 549.059 kb on + strandat 549.060 kb on - strandat 549.060 kb on - strandat 549.101 kb on + strandat 549.102 kb on - strandat 549.117 kb on + strandat 549.130 kb on - strand, within IAI46_02550at 549.183 kb on - strand, within IAI46_02550at 549.183 kb on - strand, within IAI46_02550at 549.183 kb on - strand, within IAI46_02550at 549.183 kb on - strand, within IAI46_02550at 549.251 kb on + strand, within IAI46_02550at 549.252 kb on - strand, within IAI46_02550at 549.302 kb on + strand, within IAI46_02550at 549.302 kb on + strand, within IAI46_02550at 549.303 kb on - strand, within IAI46_02550at 549.303 kb on - strand, within IAI46_02550at 549.321 kb on + strand, within IAI46_02550at 549.322 kb on - strand, within IAI46_02550at 549.434 kb on + strand, within IAI46_02550at 549.434 kb on + strand, within IAI46_02550at 549.434 kb on + strand, within IAI46_02550at 549.434 kb on + strand, within IAI46_02550at 549.435 kb on - strand, within IAI46_02550at 549.435 kb on - strand, within IAI46_02550at 549.435 kb on - strand, within IAI46_02550at 549.546 kb on + strand, within IAI46_02550at 549.546 kb on + strand, within IAI46_02550

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
remove
546,713 + IAI46_02535 0.24 +0.7
546,736 + IAI46_02535 0.26 +0.4
546,736 + IAI46_02535 0.26 +0.0
546,737 - IAI46_02535 0.26 +0.8
546,737 - IAI46_02535 0.26 +0.9
546,743 + IAI46_02535 0.27 -0.5
546,743 + IAI46_02535 0.27 +1.6
546,743 + IAI46_02535 0.27 +1.6
546,744 - IAI46_02535 0.27 +1.4
546,744 - IAI46_02535 0.27 +0.8
546,745 + IAI46_02535 0.27 -0.2
546,745 + IAI46_02535 0.27 +0.9
546,746 - IAI46_02535 0.27 +0.6
546,787 - IAI46_02535 0.32 -0.2
546,787 - IAI46_02535 0.32 +0.3
546,787 - IAI46_02535 0.32 +1.8
546,809 + IAI46_02535 0.34 -0.9
546,810 - IAI46_02535 0.34 +0.9
546,810 - IAI46_02535 0.34 -1.5
546,821 - IAI46_02535 0.36 -0.8
546,821 - IAI46_02535 0.36 -0.1
546,821 - IAI46_02535 0.36 -1.1
546,821 - IAI46_02535 0.36 -1.2
546,821 - IAI46_02535 0.36 -1.0
546,894 + IAI46_02535 0.44 +0.8
546,894 + IAI46_02535 0.44 +1.3
546,895 - IAI46_02535 0.44 -2.4
546,895 - IAI46_02535 0.44 +0.1
546,934 + IAI46_02535 0.48 -0.8
546,934 + IAI46_02535 0.48 +1.8
546,934 + IAI46_02535 0.48 -2.5
546,934 + IAI46_02535 0.48 +0.0
546,934 + IAI46_02535 0.48 -1.8
546,934 + IAI46_02535 0.48 +0.5
546,934 + IAI46_02535 0.48 +1.9
546,934 + IAI46_02535 0.48 +1.0
546,934 + IAI46_02535 0.48 +0.0
546,935 - IAI46_02535 0.48 +1.8
546,935 - IAI46_02535 0.48 -2.1
546,935 - IAI46_02535 0.48 -0.8
546,954 + IAI46_02535 0.50 +0.7
546,954 + IAI46_02535 0.50 -1.9
546,954 + IAI46_02535 0.50 +1.9
546,955 - IAI46_02535 0.50 +0.1
546,955 - IAI46_02535 0.50 +0.1
547,034 + IAI46_02535 0.59 +0.7
547,035 - IAI46_02535 0.59 +1.8
547,054 + IAI46_02535 0.61 +0.1
547,054 + IAI46_02535 0.61 -2.6
547,054 + IAI46_02535 0.61 +1.9
547,055 - IAI46_02535 0.61 -0.0
547,165 + IAI46_02535 0.73 -0.3
547,165 + IAI46_02535 0.73 -1.6
547,165 + IAI46_02535 0.73 -1.8
547,166 - IAI46_02535 0.74 -0.9
547,166 - IAI46_02535 0.74 -0.4
547,166 - IAI46_02535 0.74 +0.9
547,178 + IAI46_02535 0.75 -2.3
547,200 + IAI46_02535 0.77 +0.1
547,290 - IAI46_02535 0.87 -2.7
547,320 + -0.2
547,320 + +0.6
547,321 - +1.2
547,379 - -0.3
547,379 - +1.6
547,395 + +0.7
547,399 + -0.5
547,399 + -1.5
547,400 - -2.7
547,400 - +0.6
547,482 + +0.9
547,483 - -1.0
547,521 + +0.3
547,522 - +0.2
547,522 - -1.1
547,596 + -0.5
547,596 + +0.5
547,596 + -0.3
547,596 + -0.9
547,596 + +1.9
547,597 - -0.2
547,658 - +0.2
547,663 + +0.4
547,664 - +0.8
547,664 - -0.0
547,711 - +0.3
547,780 + IAI46_02540 0.12 -0.3
547,780 + IAI46_02540 0.12 +0.5
547,780 + IAI46_02540 0.12 -0.7
547,780 + IAI46_02540 0.12 -0.4
547,780 + IAI46_02540 0.12 -1.9
547,781 - IAI46_02540 0.12 -1.6
547,781 - IAI46_02540 0.12 -1.1
547,792 - IAI46_02540 0.13 -0.9
547,804 - IAI46_02540 0.15 -0.1
547,844 + IAI46_02540 0.19 -3.2
547,845 - IAI46_02540 0.19 +1.9
547,845 - IAI46_02540 0.19 -2.2
547,846 + IAI46_02540 0.19 +1.7
547,847 - IAI46_02540 0.19 -0.6
547,847 - IAI46_02540 0.19 +1.9
547,847 - IAI46_02540 0.19 +0.7
547,867 + IAI46_02540 0.21 -2.9
547,930 + IAI46_02540 0.28 +1.4
547,931 - IAI46_02540 0.28 +0.1
547,949 + IAI46_02540 0.30 -0.4
547,950 - IAI46_02540 0.30 +1.0
548,075 + IAI46_02540 0.43 +0.9
548,076 - IAI46_02540 0.43 -1.5
548,077 + IAI46_02540 0.43 -1.5
548,373 + IAI46_02540 0.74 +1.2
548,373 + IAI46_02540 0.74 +0.0
548,556 - +0.4
548,562 + -2.0
548,562 + -1.5
548,562 + -1.9
548,635 + +0.3
548,635 + +0.4
548,635 + +0.1
548,638 + +1.4
548,639 - +2.0
548,711 - IAI46_02545 0.36 +0.0
548,711 - IAI46_02545 0.36 +1.0
548,711 - IAI46_02545 0.36 -1.3
548,711 - IAI46_02545 0.36 +1.5
548,711 - IAI46_02545 0.36 +0.6
548,711 - IAI46_02545 0.36 +0.6
548,711 - IAI46_02545 0.36 +0.6
548,711 - IAI46_02545 0.36 +0.2
548,711 - IAI46_02545 0.36 -0.8
548,758 + IAI46_02545 0.59 +0.8
548,758 + IAI46_02545 0.59 +0.8
548,758 + IAI46_02545 0.59 -1.5
548,759 - IAI46_02545 0.60 +0.4
548,759 - IAI46_02545 0.60 +1.7
548,762 + IAI46_02545 0.61 -0.8
548,762 + IAI46_02545 0.61 -0.3
548,763 - IAI46_02545 0.62 +2.9
548,763 - IAI46_02545 0.62 -0.1
548,809 + IAI46_02545 0.84 +0.2
548,899 - +0.8
548,944 + +0.4
548,944 + +1.0
548,944 + -0.2
548,982 - +0.2
549,015 + -1.3
549,059 + -1.1
549,059 + +0.7
549,059 + -0.5
549,059 + +1.0
549,060 - -0.8
549,060 - -0.0
549,101 + -0.8
549,102 - +0.6
549,117 + +0.7
549,130 - IAI46_02550 0.10 -0.8
549,183 - IAI46_02550 0.13 +1.1
549,183 - IAI46_02550 0.13 -2.5
549,183 - IAI46_02550 0.13 -0.5
549,183 - IAI46_02550 0.13 +0.3
549,251 + IAI46_02550 0.16 -1.1
549,252 - IAI46_02550 0.16 -1.9
549,302 + IAI46_02550 0.18 +1.0
549,302 + IAI46_02550 0.18 +1.3
549,303 - IAI46_02550 0.18 -0.7
549,303 - IAI46_02550 0.18 -0.1
549,321 + IAI46_02550 0.19 +1.5
549,322 - IAI46_02550 0.19 -1.6
549,434 + IAI46_02550 0.24 -0.5
549,434 + IAI46_02550 0.24 +1.2
549,434 + IAI46_02550 0.24 +1.5
549,434 + IAI46_02550 0.24 -1.2
549,435 - IAI46_02550 0.24 -2.3
549,435 - IAI46_02550 0.24 +1.2
549,435 - IAI46_02550 0.24 -0.2
549,546 + IAI46_02550 0.29 +0.4
549,546 + IAI46_02550 0.29 +1.4

Or see this region's nucleotide sequence