Strain Fitness in Serratia liquefaciens MT49 around IAI46_01980

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01975 and IAI46_01980 overlap by 4 nucleotidesIAI46_01980 and IAI46_01985 are separated by 82 nucleotides IAI46_01975: IAI46_01975 - selenium metabolism membrane protein YedE/FdhT, at 424,028 to 425,242 _01975 IAI46_01980: IAI46_01980 - sulfurtransferase-like selenium metabolism protein YedF, at 425,239 to 425,478 _01980 IAI46_01985: IAI46_01985 - luciferase-like monooxygenase, at 425,561 to 426,574 _01985 Position (kb) 425 426Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 424.300 kb on + strand, within IAI46_01975at 424.447 kb on + strand, within IAI46_01975at 424.506 kb on - strand, within IAI46_01975at 424.522 kb on + strand, within IAI46_01975at 424.773 kb on + strand, within IAI46_01975at 424.790 kb on - strand, within IAI46_01975at 424.841 kb on - strand, within IAI46_01975at 424.850 kb on + strand, within IAI46_01975at 424.850 kb on + strand, within IAI46_01975at 424.850 kb on + strand, within IAI46_01975at 424.851 kb on - strand, within IAI46_01975at 424.851 kb on - strand, within IAI46_01975at 424.967 kb on + strand, within IAI46_01975at 424.968 kb on - strand, within IAI46_01975at 424.968 kb on - strand, within IAI46_01975at 424.994 kb on + strand, within IAI46_01975at 425.043 kb on - strand, within IAI46_01975at 425.045 kb on + strand, within IAI46_01975at 425.046 kb on - strand, within IAI46_01975at 425.081 kb on + strand, within IAI46_01975at 425.082 kb on - strand, within IAI46_01975at 425.105 kb on - strand, within IAI46_01975at 425.138 kb on + strandat 425.139 kb on - strandat 425.139 kb on - strandat 425.221 kb on + strandat 425.267 kb on - strand, within IAI46_01980at 425.277 kb on + strand, within IAI46_01980at 425.277 kb on + strand, within IAI46_01980at 425.278 kb on - strand, within IAI46_01980at 425.278 kb on - strand, within IAI46_01980at 425.433 kb on + strand, within IAI46_01980at 425.466 kb on + strandat 425.467 kb on - strandat 425.562 kb on + strandat 425.563 kb on - strandat 425.563 kb on - strandat 425.705 kb on - strand, within IAI46_01985at 425.752 kb on - strand, within IAI46_01985at 425.772 kb on - strand, within IAI46_01985at 425.855 kb on - strand, within IAI46_01985at 425.951 kb on - strand, within IAI46_01985at 425.951 kb on - strand, within IAI46_01985at 425.958 kb on + strand, within IAI46_01985at 426.138 kb on + strand, within IAI46_01985at 426.138 kb on + strand, within IAI46_01985at 426.138 kb on + strand, within IAI46_01985at 426.139 kb on - strand, within IAI46_01985at 426.139 kb on - strand, within IAI46_01985at 426.320 kb on - strand, within IAI46_01985at 426.375 kb on + strand, within IAI46_01985at 426.376 kb on - strand, within IAI46_01985at 426.376 kb on - strand, within IAI46_01985at 426.387 kb on - strand, within IAI46_01985at 426.441 kb on + strand, within IAI46_01985at 426.442 kb on - strand, within IAI46_01985at 426.450 kb on + strand, within IAI46_01985

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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424,300 + IAI46_01975 0.22 +1.1
424,447 + IAI46_01975 0.34 +0.4
424,506 - IAI46_01975 0.39 +1.3
424,522 + IAI46_01975 0.41 +0.6
424,773 + IAI46_01975 0.61 +1.6
424,790 - IAI46_01975 0.63 -1.4
424,841 - IAI46_01975 0.67 +1.1
424,850 + IAI46_01975 0.68 +1.6
424,850 + IAI46_01975 0.68 -0.3
424,850 + IAI46_01975 0.68 +1.2
424,851 - IAI46_01975 0.68 +0.9
424,851 - IAI46_01975 0.68 -1.8
424,967 + IAI46_01975 0.77 +0.1
424,968 - IAI46_01975 0.77 -1.2
424,968 - IAI46_01975 0.77 +0.2
424,994 + IAI46_01975 0.80 -3.6
425,043 - IAI46_01975 0.84 +1.0
425,045 + IAI46_01975 0.84 +0.7
425,046 - IAI46_01975 0.84 -1.8
425,081 + IAI46_01975 0.87 +2.1
425,082 - IAI46_01975 0.87 -2.0
425,105 - IAI46_01975 0.89 +1.2
425,138 + +0.4
425,139 - -1.8
425,139 - +0.0
425,221 + -1.1
425,267 - IAI46_01980 0.12 +0.2
425,277 + IAI46_01980 0.16 +0.7
425,277 + IAI46_01980 0.16 -1.3
425,278 - IAI46_01980 0.16 -0.6
425,278 - IAI46_01980 0.16 -1.5
425,433 + IAI46_01980 0.81 +1.0
425,466 + -0.2
425,467 - +0.1
425,562 + -1.4
425,563 - +0.6
425,563 - +0.4
425,705 - IAI46_01985 0.14 -2.8
425,752 - IAI46_01985 0.19 +0.1
425,772 - IAI46_01985 0.21 -0.3
425,855 - IAI46_01985 0.29 -0.6
425,951 - IAI46_01985 0.38 +0.5
425,951 - IAI46_01985 0.38 +0.5
425,958 + IAI46_01985 0.39 +0.5
426,138 + IAI46_01985 0.57 +0.3
426,138 + IAI46_01985 0.57 +1.1
426,138 + IAI46_01985 0.57 -0.2
426,139 - IAI46_01985 0.57 +2.5
426,139 - IAI46_01985 0.57 +0.8
426,320 - IAI46_01985 0.75 -0.7
426,375 + IAI46_01985 0.80 -1.9
426,376 - IAI46_01985 0.80 -0.7
426,376 - IAI46_01985 0.80 -1.7
426,387 - IAI46_01985 0.81 -1.4
426,441 + IAI46_01985 0.87 -0.4
426,442 - IAI46_01985 0.87 +0.9
426,450 + IAI46_01985 0.88 -0.3

Or see this region's nucleotide sequence