Strain Fitness in Serratia liquefaciens MT49 around IAI46_01735

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01725 and IAI46_01730 are separated by 288 nucleotidesIAI46_01730 and IAI46_01735 are separated by 43 nucleotidesIAI46_01735 and IAI46_01740 are separated by 119 nucleotides IAI46_01725: IAI46_01725 - Opacity-associated protein A domain protein, at 373,225 to 373,893 _01725 IAI46_01730: IAI46_01730 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 374,182 to 374,802 _01730 IAI46_01735: IAI46_01735 - iron-sulfur cluster repair protein YtfE, at 374,846 to 375,511 _01735 IAI46_01740: IAI46_01740 - bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase, at 375,631 to 377,583 _01740 Position (kb) 374 375 376Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 373.850 kb on + strandat 373.850 kb on + strandat 373.850 kb on + strandat 373.896 kb on + strandat 373.941 kb on + strandat 373.942 kb on - strandat 373.971 kb on + strandat 373.971 kb on + strandat 374.059 kb on + strandat 374.070 kb on + strandat 374.141 kb on - strandat 374.141 kb on - strandat 374.141 kb on - strandat 374.162 kb on - strandat 374.168 kb on + strandat 374.237 kb on + strandat 374.237 kb on + strandat 374.473 kb on - strand, within IAI46_01730at 374.473 kb on - strand, within IAI46_01730at 374.560 kb on + strand, within IAI46_01730at 374.560 kb on + strand, within IAI46_01730at 374.561 kb on - strand, within IAI46_01730at 374.561 kb on - strand, within IAI46_01730at 374.561 kb on - strand, within IAI46_01730at 374.603 kb on + strand, within IAI46_01730at 374.603 kb on + strand, within IAI46_01730at 374.603 kb on + strand, within IAI46_01730at 374.604 kb on - strand, within IAI46_01730at 374.701 kb on + strand, within IAI46_01730at 374.701 kb on + strand, within IAI46_01730at 374.701 kb on + strand, within IAI46_01730at 374.701 kb on + strand, within IAI46_01730at 374.701 kb on + strand, within IAI46_01730at 374.701 kb on + strand, within IAI46_01730at 374.702 kb on - strand, within IAI46_01730at 374.702 kb on - strand, within IAI46_01730at 374.702 kb on - strand, within IAI46_01730at 374.702 kb on - strand, within IAI46_01730at 374.703 kb on + strand, within IAI46_01730at 374.704 kb on - strand, within IAI46_01730at 374.848 kb on - strandat 374.917 kb on + strand, within IAI46_01735at 374.918 kb on - strand, within IAI46_01735at 374.937 kb on + strand, within IAI46_01735at 374.937 kb on + strand, within IAI46_01735at 374.937 kb on + strand, within IAI46_01735at 374.937 kb on + strand, within IAI46_01735at 374.937 kb on + strand, within IAI46_01735at 374.938 kb on - strand, within IAI46_01735at 374.954 kb on - strand, within IAI46_01735at 375.274 kb on + strand, within IAI46_01735at 375.274 kb on + strand, within IAI46_01735at 375.274 kb on + strand, within IAI46_01735at 375.274 kb on + strand, within IAI46_01735at 375.275 kb on - strand, within IAI46_01735at 375.277 kb on - strand, within IAI46_01735at 375.277 kb on - strand, within IAI46_01735at 375.277 kb on - strand, within IAI46_01735at 375.277 kb on - strand, within IAI46_01735at 375.305 kb on - strand, within IAI46_01735at 375.305 kb on - strand, within IAI46_01735at 375.316 kb on - strand, within IAI46_01735at 375.316 kb on - strand, within IAI46_01735at 375.316 kb on - strand, within IAI46_01735at 375.316 kb on - strand, within IAI46_01735at 375.382 kb on + strand, within IAI46_01735at 375.470 kb on - strandat 375.499 kb on + strandat 375.504 kb on + strandat 375.525 kb on + strandat 375.535 kb on - strandat 375.632 kb on + strandat 375.639 kb on + strandat 375.720 kb on + strandat 375.721 kb on - strandat 375.763 kb on - strandat 375.824 kb on - strandat 375.856 kb on - strand, within IAI46_01740at 375.856 kb on - strand, within IAI46_01740at 375.856 kb on - strand, within IAI46_01740at 375.857 kb on + strand, within IAI46_01740at 375.858 kb on - strand, within IAI46_01740at 375.903 kb on + strand, within IAI46_01740at 375.904 kb on - strand, within IAI46_01740at 375.947 kb on + strand, within IAI46_01740at 375.948 kb on - strand, within IAI46_01740at 375.948 kb on - strand, within IAI46_01740at 375.948 kb on - strand, within IAI46_01740at 375.948 kb on - strand, within IAI46_01740at 375.951 kb on + strand, within IAI46_01740at 375.951 kb on + strand, within IAI46_01740at 375.952 kb on - strand, within IAI46_01740at 375.952 kb on - strand, within IAI46_01740at 375.952 kb on - strand, within IAI46_01740at 375.978 kb on + strand, within IAI46_01740at 375.978 kb on + strand, within IAI46_01740at 375.979 kb on - strand, within IAI46_01740at 375.979 kb on - strand, within IAI46_01740at 376.018 kb on - strand, within IAI46_01740at 376.092 kb on + strand, within IAI46_01740at 376.093 kb on - strand, within IAI46_01740at 376.093 kb on - strand, within IAI46_01740at 376.117 kb on - strand, within IAI46_01740at 376.118 kb on + strand, within IAI46_01740at 376.119 kb on - strand, within IAI46_01740at 376.119 kb on - strand, within IAI46_01740at 376.237 kb on + strand, within IAI46_01740at 376.238 kb on - strand, within IAI46_01740at 376.240 kb on + strand, within IAI46_01740at 376.260 kb on - strand, within IAI46_01740at 376.265 kb on + strand, within IAI46_01740at 376.265 kb on + strand, within IAI46_01740at 376.266 kb on - strand, within IAI46_01740at 376.266 kb on - strand, within IAI46_01740at 376.409 kb on + strand, within IAI46_01740at 376.409 kb on + strand, within IAI46_01740at 376.410 kb on - strand, within IAI46_01740at 376.410 kb on - strand, within IAI46_01740at 376.421 kb on + strand, within IAI46_01740at 376.421 kb on + strand, within IAI46_01740at 376.421 kb on + strand, within IAI46_01740at 376.438 kb on - strand, within IAI46_01740at 376.482 kb on - strand, within IAI46_01740at 376.487 kb on + strand, within IAI46_01740at 376.487 kb on + strand, within IAI46_01740at 376.487 kb on + strand, within IAI46_01740at 376.487 kb on + strand, within IAI46_01740at 376.487 kb on + strand, within IAI46_01740at 376.488 kb on - strand, within IAI46_01740at 376.488 kb on - strand, within IAI46_01740at 376.488 kb on - strand, within IAI46_01740

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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373,850 + -0.5
373,850 + +0.3
373,850 + -1.0
373,896 + -0.2
373,941 + +1.3
373,942 - +0.0
373,971 + +1.9
373,971 + -0.8
374,059 + +0.7
374,070 + +1.1
374,141 - -0.1
374,141 - +0.4
374,141 - +2.5
374,162 - -0.9
374,168 + +0.6
374,237 + +1.0
374,237 + +0.8
374,473 - IAI46_01730 0.47 +1.1
374,473 - IAI46_01730 0.47 -1.1
374,560 + IAI46_01730 0.61 +1.3
374,560 + IAI46_01730 0.61 +1.2
374,561 - IAI46_01730 0.61 -1.1
374,561 - IAI46_01730 0.61 -1.4
374,561 - IAI46_01730 0.61 +0.8
374,603 + IAI46_01730 0.68 +1.2
374,603 + IAI46_01730 0.68 +1.3
374,603 + IAI46_01730 0.68 +0.6
374,604 - IAI46_01730 0.68 +0.4
374,701 + IAI46_01730 0.84 -0.1
374,701 + IAI46_01730 0.84 -0.4
374,701 + IAI46_01730 0.84 -1.1
374,701 + IAI46_01730 0.84 -0.4
374,701 + IAI46_01730 0.84 +2.1
374,701 + IAI46_01730 0.84 +0.1
374,702 - IAI46_01730 0.84 +2.0
374,702 - IAI46_01730 0.84 -0.1
374,702 - IAI46_01730 0.84 +1.3
374,702 - IAI46_01730 0.84 +0.0
374,703 + IAI46_01730 0.84 -1.1
374,704 - IAI46_01730 0.84 +1.1
374,848 - +2.0
374,917 + IAI46_01735 0.11 +0.8
374,918 - IAI46_01735 0.11 +0.3
374,937 + IAI46_01735 0.14 -0.3
374,937 + IAI46_01735 0.14 -0.2
374,937 + IAI46_01735 0.14 +0.9
374,937 + IAI46_01735 0.14 +1.4
374,937 + IAI46_01735 0.14 +0.2
374,938 - IAI46_01735 0.14 -1.1
374,954 - IAI46_01735 0.16 +1.7
375,274 + IAI46_01735 0.64 -1.6
375,274 + IAI46_01735 0.64 -0.3
375,274 + IAI46_01735 0.64 -0.3
375,274 + IAI46_01735 0.64 +2.5
375,275 - IAI46_01735 0.64 +0.5
375,277 - IAI46_01735 0.65 -1.8
375,277 - IAI46_01735 0.65 +0.4
375,277 - IAI46_01735 0.65 +0.7
375,277 - IAI46_01735 0.65 -1.7
375,305 - IAI46_01735 0.69 +0.5
375,305 - IAI46_01735 0.69 +0.5
375,316 - IAI46_01735 0.71 -1.5
375,316 - IAI46_01735 0.71 +1.8
375,316 - IAI46_01735 0.71 +0.2
375,316 - IAI46_01735 0.71 -2.8
375,382 + IAI46_01735 0.80 +1.2
375,470 - -0.2
375,499 + -0.6
375,504 + -3.0
375,525 + +1.5
375,535 - -2.0
375,632 + +1.6
375,639 + -0.9
375,720 + -2.0
375,721 - -0.1
375,763 - -0.7
375,824 - +0.3
375,856 - IAI46_01740 0.12 +1.0
375,856 - IAI46_01740 0.12 +1.4
375,856 - IAI46_01740 0.12 +2.2
375,857 + IAI46_01740 0.12 +1.5
375,858 - IAI46_01740 0.12 -0.4
375,903 + IAI46_01740 0.14 +0.7
375,904 - IAI46_01740 0.14 +0.6
375,947 + IAI46_01740 0.16 +0.6
375,948 - IAI46_01740 0.16 +1.3
375,948 - IAI46_01740 0.16 +0.5
375,948 - IAI46_01740 0.16 +1.0
375,948 - IAI46_01740 0.16 +0.5
375,951 + IAI46_01740 0.16 -1.6
375,951 + IAI46_01740 0.16 -1.5
375,952 - IAI46_01740 0.16 -1.0
375,952 - IAI46_01740 0.16 -1.8
375,952 - IAI46_01740 0.16 +1.4
375,978 + IAI46_01740 0.18 -1.6
375,978 + IAI46_01740 0.18 +1.9
375,979 - IAI46_01740 0.18 +2.9
375,979 - IAI46_01740 0.18 +0.6
376,018 - IAI46_01740 0.20 +1.2
376,092 + IAI46_01740 0.24 +0.2
376,093 - IAI46_01740 0.24 -2.2
376,093 - IAI46_01740 0.24 +2.3
376,117 - IAI46_01740 0.25 -0.1
376,118 + IAI46_01740 0.25 +1.2
376,119 - IAI46_01740 0.25 +2.0
376,119 - IAI46_01740 0.25 +0.8
376,237 + IAI46_01740 0.31 -2.1
376,238 - IAI46_01740 0.31 +2.1
376,240 + IAI46_01740 0.31 +0.1
376,260 - IAI46_01740 0.32 +1.3
376,265 + IAI46_01740 0.32 -0.4
376,265 + IAI46_01740 0.32 +0.3
376,266 - IAI46_01740 0.33 -0.3
376,266 - IAI46_01740 0.33 +1.5
376,409 + IAI46_01740 0.40 +0.3
376,409 + IAI46_01740 0.40 +0.7
376,410 - IAI46_01740 0.40 -1.6
376,410 - IAI46_01740 0.40 +0.5
376,421 + IAI46_01740 0.40 +1.7
376,421 + IAI46_01740 0.40 +0.8
376,421 + IAI46_01740 0.40 +0.1
376,438 - IAI46_01740 0.41 +1.3
376,482 - IAI46_01740 0.44 +1.4
376,487 + IAI46_01740 0.44 -2.2
376,487 + IAI46_01740 0.44 +0.1
376,487 + IAI46_01740 0.44 -0.9
376,487 + IAI46_01740 0.44 +0.5
376,487 + IAI46_01740 0.44 +1.0
376,488 - IAI46_01740 0.44 -2.3
376,488 - IAI46_01740 0.44 +0.4
376,488 - IAI46_01740 0.44 +1.6

Or see this region's nucleotide sequence