Strain Fitness in Serratia liquefaciens MT49 around IAI46_01600

Experiment: Cadmium acetate 40 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_01595 and IAI46_01600 overlap by 2 nucleotidesIAI46_01600 and IAI46_01605 are separated by 14 nucleotidesIAI46_01605 and IAI46_01610 are separated by 7 nucleotides IAI46_01595: IAI46_01595 - tRNA epoxyqueuosine(34) reductase QueG, at 348,827 to 349,966 _01595 IAI46_01600: IAI46_01600 - bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase, at 349,965 to 351,476 _01600 IAI46_01605: IAI46_01605 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE, at 351,491 to 351,961 _01605 IAI46_01610: IAI46_01610 - N-acetylmuramoyl-L-alanine amidase AmiB, at 351,969 to 353,765 _01610 Position (kb) 349 350 351 352Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 349.056 kb on - strand, within IAI46_01595at 349.213 kb on + strand, within IAI46_01595at 349.213 kb on + strand, within IAI46_01595at 349.214 kb on - strand, within IAI46_01595at 349.214 kb on - strand, within IAI46_01595at 349.236 kb on + strand, within IAI46_01595at 349.254 kb on - strand, within IAI46_01595at 349.309 kb on + strand, within IAI46_01595at 349.309 kb on + strand, within IAI46_01595at 349.310 kb on - strand, within IAI46_01595at 349.325 kb on + strand, within IAI46_01595at 349.326 kb on - strand, within IAI46_01595at 349.363 kb on + strand, within IAI46_01595at 349.364 kb on - strand, within IAI46_01595at 349.364 kb on - strand, within IAI46_01595at 349.364 kb on - strand, within IAI46_01595at 349.369 kb on + strand, within IAI46_01595at 349.369 kb on + strand, within IAI46_01595at 349.409 kb on - strand, within IAI46_01595at 349.638 kb on + strand, within IAI46_01595at 349.657 kb on - strand, within IAI46_01595at 349.673 kb on + strand, within IAI46_01595at 349.673 kb on + strand, within IAI46_01595at 349.722 kb on + strand, within IAI46_01595at 349.722 kb on + strand, within IAI46_01595at 349.722 kb on + strand, within IAI46_01595at 349.722 kb on + strand, within IAI46_01595at 349.723 kb on - strand, within IAI46_01595at 349.825 kb on - strand, within IAI46_01595at 349.825 kb on - strand, within IAI46_01595at 349.889 kb on + strandat 349.890 kb on - strandat 349.890 kb on - strandat 349.890 kb on - strandat 349.890 kb on - strandat 349.927 kb on + strandat 349.927 kb on + strandat 349.927 kb on + strandat 349.927 kb on + strandat 349.927 kb on + strandat 349.928 kb on - strandat 349.928 kb on - strandat 349.928 kb on - strandat 349.928 kb on - strandat 349.928 kb on - strandat 350.079 kb on + strandat 350.193 kb on + strand, within IAI46_01600at 350.193 kb on + strand, within IAI46_01600at 350.194 kb on - strand, within IAI46_01600at 350.457 kb on - strand, within IAI46_01600at 350.531 kb on + strand, within IAI46_01600at 350.531 kb on + strand, within IAI46_01600at 350.531 kb on + strand, within IAI46_01600at 350.532 kb on - strand, within IAI46_01600at 350.532 kb on - strand, within IAI46_01600at 350.609 kb on + strand, within IAI46_01600at 350.610 kb on - strand, within IAI46_01600at 350.610 kb on - strand, within IAI46_01600at 350.610 kb on - strand, within IAI46_01600at 350.615 kb on - strand, within IAI46_01600at 350.715 kb on - strand, within IAI46_01600at 350.715 kb on - strand, within IAI46_01600at 350.990 kb on - strand, within IAI46_01600at 351.006 kb on - strand, within IAI46_01600at 351.040 kb on + strand, within IAI46_01600at 351.040 kb on + strand, within IAI46_01600at 351.041 kb on - strand, within IAI46_01600at 351.049 kb on + strand, within IAI46_01600at 351.049 kb on + strand, within IAI46_01600at 351.148 kb on + strand, within IAI46_01600at 351.162 kb on - strand, within IAI46_01600at 351.177 kb on + strand, within IAI46_01600at 351.177 kb on + strand, within IAI46_01600at 351.177 kb on + strand, within IAI46_01600at 351.210 kb on - strand, within IAI46_01600at 351.339 kb on + strandat 351.339 kb on + strandat 351.339 kb on + strandat 351.339 kb on + strandat 351.339 kb on + strandat 351.339 kb on + strandat 351.340 kb on - strandat 351.409 kb on + strandat 351.433 kb on + strandat 351.450 kb on + strandat 351.453 kb on + strandat 351.453 kb on + strandat 351.453 kb on + strandat 351.453 kb on + strandat 351.453 kb on + strandat 351.453 kb on + strandat 351.453 kb on + strandat 351.453 kb on + strandat 351.453 kb on + strandat 351.474 kb on + strandat 351.478 kb on + strandat 351.940 kb on + strandat 351.940 kb on + strandat 351.975 kb on + strandat 351.975 kb on + strandat 351.975 kb on + strandat 351.975 kb on + strandat 351.976 kb on - strandat 351.976 kb on - strandat 351.976 kb on - strandat 351.976 kb on - strandat 351.976 kb on - strandat 351.976 kb on - strandat 351.976 kb on - strandat 351.992 kb on - strandat 351.997 kb on + strandat 352.070 kb on + strandat 352.071 kb on - strandat 352.115 kb on + strandat 352.131 kb on + strandat 352.168 kb on + strand, within IAI46_01610at 352.276 kb on + strand, within IAI46_01610at 352.276 kb on + strand, within IAI46_01610at 352.277 kb on - strand, within IAI46_01610at 352.344 kb on + strand, within IAI46_01610at 352.345 kb on - strand, within IAI46_01610at 352.345 kb on - strand, within IAI46_01610at 352.347 kb on - strand, within IAI46_01610at 352.388 kb on + strand, within IAI46_01610at 352.388 kb on + strand, within IAI46_01610at 352.388 kb on + strand, within IAI46_01610at 352.389 kb on - strand, within IAI46_01610at 352.389 kb on - strand, within IAI46_01610at 352.393 kb on + strand, within IAI46_01610at 352.393 kb on + strand, within IAI46_01610at 352.443 kb on - strand, within IAI46_01610at 352.443 kb on - strand, within IAI46_01610

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
remove
349,056 - IAI46_01595 0.20 -1.1
349,213 + IAI46_01595 0.34 -0.1
349,213 + IAI46_01595 0.34 -3.0
349,214 - IAI46_01595 0.34 -1.4
349,214 - IAI46_01595 0.34 -1.7
349,236 + IAI46_01595 0.36 +1.3
349,254 - IAI46_01595 0.37 -0.4
349,309 + IAI46_01595 0.42 -0.9
349,309 + IAI46_01595 0.42 -1.8
349,310 - IAI46_01595 0.42 +0.3
349,325 + IAI46_01595 0.44 +0.8
349,326 - IAI46_01595 0.44 +0.9
349,363 + IAI46_01595 0.47 -1.5
349,364 - IAI46_01595 0.47 +0.5
349,364 - IAI46_01595 0.47 -2.2
349,364 - IAI46_01595 0.47 +1.3
349,369 + IAI46_01595 0.48 +1.1
349,369 + IAI46_01595 0.48 -0.0
349,409 - IAI46_01595 0.51 -0.3
349,638 + IAI46_01595 0.71 -1.0
349,657 - IAI46_01595 0.73 -0.4
349,673 + IAI46_01595 0.74 +0.7
349,673 + IAI46_01595 0.74 +0.0
349,722 + IAI46_01595 0.79 -0.3
349,722 + IAI46_01595 0.79 -0.6
349,722 + IAI46_01595 0.79 +0.7
349,722 + IAI46_01595 0.79 +0.5
349,723 - IAI46_01595 0.79 -1.7
349,825 - IAI46_01595 0.88 +1.0
349,825 - IAI46_01595 0.88 +0.3
349,889 + -0.1
349,890 - +0.3
349,890 - +2.0
349,890 - +0.1
349,890 - -0.1
349,927 + +1.0
349,927 + -1.3
349,927 + -2.0
349,927 + -0.4
349,927 + +0.3
349,928 - -0.8
349,928 - -2.9
349,928 - -1.5
349,928 - +0.4
349,928 - -1.1
350,079 + -2.3
350,193 + IAI46_01600 0.15 -0.5
350,193 + IAI46_01600 0.15 -0.4
350,194 - IAI46_01600 0.15 -1.1
350,457 - IAI46_01600 0.33 -1.1
350,531 + IAI46_01600 0.37 -2.6
350,531 + IAI46_01600 0.37 +1.7
350,531 + IAI46_01600 0.37 +1.8
350,532 - IAI46_01600 0.38 +0.3
350,532 - IAI46_01600 0.38 +0.4
350,609 + IAI46_01600 0.43 +0.2
350,610 - IAI46_01600 0.43 +0.7
350,610 - IAI46_01600 0.43 -1.8
350,610 - IAI46_01600 0.43 -1.1
350,615 - IAI46_01600 0.43 +0.6
350,715 - IAI46_01600 0.50 -1.7
350,715 - IAI46_01600 0.50 -1.3
350,990 - IAI46_01600 0.68 -0.4
351,006 - IAI46_01600 0.69 +0.4
351,040 + IAI46_01600 0.71 +2.5
351,040 + IAI46_01600 0.71 -0.2
351,041 - IAI46_01600 0.71 -1.0
351,049 + IAI46_01600 0.72 -1.8
351,049 + IAI46_01600 0.72 +0.6
351,148 + IAI46_01600 0.78 -1.7
351,162 - IAI46_01600 0.79 -2.4
351,177 + IAI46_01600 0.80 +1.8
351,177 + IAI46_01600 0.80 +2.0
351,177 + IAI46_01600 0.80 +0.5
351,210 - IAI46_01600 0.82 -0.5
351,339 + -1.4
351,339 + -0.5
351,339 + +1.4
351,339 + +0.3
351,339 + -0.7
351,339 + -1.1
351,340 - +1.0
351,409 + -2.5
351,433 + +0.2
351,450 + -3.2
351,453 + +0.4
351,453 + -0.6
351,453 + +0.0
351,453 + +1.4
351,453 + +1.0
351,453 + +1.3
351,453 + -1.5
351,453 + +0.1
351,453 + +1.0
351,474 + +0.3
351,478 + -2.2
351,940 + -0.8
351,940 + -0.1
351,975 + -2.6
351,975 + -0.7
351,975 + +0.5
351,975 + -1.0
351,976 - +0.3
351,976 - -0.9
351,976 - -2.1
351,976 - -0.7
351,976 - -1.6
351,976 - -3.5
351,976 - -1.9
351,992 - -0.6
351,997 + -0.1
352,070 + -2.4
352,071 - -0.2
352,115 + -2.1
352,131 + -2.0
352,168 + IAI46_01610 0.11 -2.6
352,276 + IAI46_01610 0.17 -3.0
352,276 + IAI46_01610 0.17 -2.6
352,277 - IAI46_01610 0.17 -2.1
352,344 + IAI46_01610 0.21 -0.6
352,345 - IAI46_01610 0.21 -4.4
352,345 - IAI46_01610 0.21 -2.8
352,347 - IAI46_01610 0.21 -2.5
352,388 + IAI46_01610 0.23 -4.1
352,388 + IAI46_01610 0.23 -4.3
352,388 + IAI46_01610 0.23 -2.4
352,389 - IAI46_01610 0.23 -3.1
352,389 - IAI46_01610 0.23 -4.1
352,393 + IAI46_01610 0.24 -1.3
352,393 + IAI46_01610 0.24 -1.0
352,443 - IAI46_01610 0.26 -4.3
352,443 - IAI46_01610 0.26 -2.7

Or see this region's nucleotide sequence