Strain Fitness in Serratia liquefaciens MT49 around IAI46_01280

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01270 and IAI46_01275 overlap by 1 nucleotidesIAI46_01275 and IAI46_01280 are separated by 1 nucleotidesIAI46_01280 and IAI46_01285 overlap by 33 nucleotides IAI46_01270: IAI46_01270 - GNAT family N-acetyltransferase, at 282,245 to 282,691 _01270 IAI46_01275: IAI46_01275 - oxidoreductase, at 282,691 to 283,155 _01275 IAI46_01280: IAI46_01280 - HAMP domain-containing histidine kinase, at 283,157 to 284,449 _01280 IAI46_01285: IAI46_01285 - response regulator, at 284,417 to 285,232 _01285 Position (kb) 283 284 285Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 282.176 kb on + strandat 282.179 kb on + strandat 282.179 kb on + strandat 282.179 kb on + strandat 282.179 kb on + strandat 282.185 kb on + strandat 282.185 kb on + strandat 282.223 kb on + strandat 282.223 kb on + strandat 282.224 kb on - strandat 282.238 kb on + strandat 282.238 kb on + strandat 282.238 kb on + strandat 282.239 kb on - strandat 282.239 kb on - strandat 282.244 kb on + strandat 282.245 kb on - strandat 282.245 kb on - strandat 282.293 kb on + strand, within IAI46_01270at 282.293 kb on + strand, within IAI46_01270at 282.293 kb on + strand, within IAI46_01270at 282.293 kb on + strand, within IAI46_01270at 282.294 kb on - strand, within IAI46_01270at 282.294 kb on - strand, within IAI46_01270at 282.299 kb on + strand, within IAI46_01270at 282.299 kb on + strand, within IAI46_01270at 282.354 kb on - strand, within IAI46_01270at 282.354 kb on - strand, within IAI46_01270at 282.361 kb on + strand, within IAI46_01270at 282.362 kb on - strand, within IAI46_01270at 282.362 kb on - strand, within IAI46_01270at 282.382 kb on + strand, within IAI46_01270at 282.382 kb on + strand, within IAI46_01270at 282.382 kb on + strand, within IAI46_01270at 282.382 kb on + strand, within IAI46_01270at 282.385 kb on + strand, within IAI46_01270at 282.425 kb on + strand, within IAI46_01270at 282.451 kb on + strand, within IAI46_01270at 282.451 kb on + strand, within IAI46_01270at 282.451 kb on + strand, within IAI46_01270at 282.523 kb on - strand, within IAI46_01270at 282.581 kb on - strand, within IAI46_01270at 282.612 kb on - strand, within IAI46_01270at 282.685 kb on + strandat 282.685 kb on + strandat 282.686 kb on - strandat 282.717 kb on - strandat 282.749 kb on - strand, within IAI46_01275at 282.749 kb on - strand, within IAI46_01275at 282.749 kb on - strand, within IAI46_01275at 282.749 kb on - strand, within IAI46_01275at 282.749 kb on - strand, within IAI46_01275at 282.769 kb on + strand, within IAI46_01275at 282.804 kb on + strand, within IAI46_01275at 282.805 kb on - strand, within IAI46_01275at 282.843 kb on + strand, within IAI46_01275at 282.856 kb on - strand, within IAI46_01275at 282.856 kb on - strand, within IAI46_01275at 282.930 kb on + strand, within IAI46_01275at 282.930 kb on + strand, within IAI46_01275at 282.931 kb on - strand, within IAI46_01275at 282.958 kb on + strand, within IAI46_01275at 282.959 kb on - strand, within IAI46_01275at 282.959 kb on - strand, within IAI46_01275at 282.959 kb on - strand, within IAI46_01275at 282.965 kb on - strand, within IAI46_01275at 282.991 kb on - strand, within IAI46_01275at 282.991 kb on - strand, within IAI46_01275at 282.994 kb on + strand, within IAI46_01275at 282.994 kb on + strand, within IAI46_01275at 282.995 kb on - strand, within IAI46_01275at 283.003 kb on - strand, within IAI46_01275at 283.014 kb on + strand, within IAI46_01275at 283.033 kb on - strand, within IAI46_01275at 283.066 kb on - strand, within IAI46_01275at 283.069 kb on + strand, within IAI46_01275at 283.069 kb on + strand, within IAI46_01275at 283.070 kb on + strand, within IAI46_01275at 283.070 kb on - strand, within IAI46_01275at 283.070 kb on - strand, within IAI46_01275at 283.080 kb on + strand, within IAI46_01275at 283.133 kb on + strandat 283.134 kb on - strandat 283.134 kb on - strandat 283.218 kb on + strandat 283.256 kb on + strandat 283.256 kb on + strandat 283.257 kb on - strandat 283.286 kb on + strandat 283.286 kb on + strandat 283.358 kb on - strand, within IAI46_01280at 283.361 kb on + strand, within IAI46_01280at 283.362 kb on - strand, within IAI46_01280at 283.372 kb on + strand, within IAI46_01280at 283.513 kb on + strand, within IAI46_01280at 283.552 kb on + strand, within IAI46_01280at 283.552 kb on + strand, within IAI46_01280at 283.552 kb on + strand, within IAI46_01280at 283.552 kb on + strand, within IAI46_01280at 283.553 kb on - strand, within IAI46_01280at 283.555 kb on - strand, within IAI46_01280at 283.690 kb on + strand, within IAI46_01280at 283.758 kb on + strand, within IAI46_01280at 283.758 kb on + strand, within IAI46_01280at 283.758 kb on + strand, within IAI46_01280at 283.762 kb on + strand, within IAI46_01280at 283.762 kb on + strand, within IAI46_01280at 283.762 kb on + strand, within IAI46_01280at 283.774 kb on + strand, within IAI46_01280at 283.803 kb on + strand, within IAI46_01280at 283.909 kb on + strand, within IAI46_01280at 283.943 kb on + strand, within IAI46_01280at 283.969 kb on - strand, within IAI46_01280at 283.969 kb on - strand, within IAI46_01280at 283.969 kb on - strand, within IAI46_01280at 284.087 kb on - strand, within IAI46_01280at 284.100 kb on - strand, within IAI46_01280at 284.106 kb on + strand, within IAI46_01280at 284.149 kb on + strand, within IAI46_01280at 284.202 kb on - strand, within IAI46_01280at 284.260 kb on + strand, within IAI46_01280at 284.323 kb on + strandat 284.325 kb on + strandat 284.326 kb on - strandat 284.333 kb on + strandat 284.455 kb on + strandat 284.490 kb on - strandat 284.497 kb on - strandat 284.502 kb on - strand, within IAI46_01285at 284.504 kb on + strand, within IAI46_01285at 284.505 kb on - strand, within IAI46_01285at 284.505 kb on - strand, within IAI46_01285at 284.537 kb on + strand, within IAI46_01285at 284.572 kb on + strand, within IAI46_01285at 284.598 kb on - strand, within IAI46_01285at 284.645 kb on - strand, within IAI46_01285at 284.645 kb on - strand, within IAI46_01285at 284.655 kb on + strand, within IAI46_01285at 284.655 kb on + strand, within IAI46_01285at 284.656 kb on - strand, within IAI46_01285at 284.659 kb on + strand, within IAI46_01285at 284.660 kb on - strand, within IAI46_01285at 284.660 kb on - strand, within IAI46_01285at 284.660 kb on - strand, within IAI46_01285at 284.660 kb on - strand, within IAI46_01285at 284.660 kb on - strand, within IAI46_01285at 284.660 kb on - strand, within IAI46_01285at 284.690 kb on - strand, within IAI46_01285at 284.804 kb on + strand, within IAI46_01285at 284.818 kb on + strand, within IAI46_01285at 284.818 kb on + strand, within IAI46_01285at 284.819 kb on - strand, within IAI46_01285at 284.820 kb on + strand, within IAI46_01285at 284.820 kb on + strand, within IAI46_01285at 284.820 kb on + strand, within IAI46_01285at 284.820 kb on + strand, within IAI46_01285at 284.820 kb on + strand, within IAI46_01285at 284.821 kb on - strand, within IAI46_01285at 284.857 kb on + strand, within IAI46_01285at 284.858 kb on - strand, within IAI46_01285at 284.858 kb on - strand, within IAI46_01285at 284.860 kb on + strand, within IAI46_01285at 284.889 kb on + strand, within IAI46_01285at 284.889 kb on + strand, within IAI46_01285at 284.889 kb on + strand, within IAI46_01285at 284.916 kb on - strand, within IAI46_01285at 284.950 kb on + strand, within IAI46_01285at 284.950 kb on + strand, within IAI46_01285at 284.951 kb on - strand, within IAI46_01285at 284.951 kb on - strand, within IAI46_01285at 284.954 kb on + strand, within IAI46_01285at 284.954 kb on + strand, within IAI46_01285at 284.955 kb on - strand, within IAI46_01285at 284.955 kb on - strand, within IAI46_01285at 284.955 kb on - strand, within IAI46_01285at 284.955 kb on - strand, within IAI46_01285at 284.955 kb on - strand, within IAI46_01285at 284.955 kb on - strand, within IAI46_01285at 285.016 kb on - strand, within IAI46_01285at 285.016 kb on - strand, within IAI46_01285at 285.016 kb on - strand, within IAI46_01285at 285.016 kb on - strand, within IAI46_01285at 285.024 kb on - strand, within IAI46_01285at 285.059 kb on - strand, within IAI46_01285at 285.059 kb on - strand, within IAI46_01285at 285.085 kb on + strand, within IAI46_01285at 285.086 kb on - strand, within IAI46_01285at 285.086 kb on - strand, within IAI46_01285at 285.087 kb on + strand, within IAI46_01285at 285.088 kb on - strand, within IAI46_01285at 285.088 kb on - strand, within IAI46_01285at 285.088 kb on - strand, within IAI46_01285at 285.264 kb on + strandat 285.265 kb on - strandat 285.266 kb on + strandat 285.266 kb on + strandat 285.266 kb on + strandat 285.267 kb on - strandat 285.267 kb on - strandat 285.372 kb on - strandat 285.372 kb on - strandat 285.380 kb on + strandat 285.381 kb on - strandat 285.386 kb on + strandat 285.387 kb on - strandat 285.387 kb on - strandat 285.387 kb on - strandat 285.387 kb on - strandat 285.390 kb on + strandat 285.390 kb on + strandat 285.391 kb on - strandat 285.391 kb on - strandat 285.391 kb on - strandat 285.397 kb on + strandat 285.397 kb on + strandat 285.397 kb on + strandat 285.397 kb on + strandat 285.397 kb on + strandat 285.397 kb on + strandat 285.397 kb on + strandat 285.397 kb on + strandat 285.398 kb on - strandat 285.398 kb on - strandat 285.398 kb on - strandat 285.398 kb on - strandat 285.398 kb on - strandat 285.399 kb on + strandat 285.399 kb on + strandat 285.399 kb on + strandat 285.400 kb on - strandat 285.400 kb on - strandat 285.400 kb on - strandat 285.400 kb on - strandat 285.444 kb on - strandat 285.444 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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282,176 + +0.2
282,179 + +1.2
282,179 + +1.0
282,179 + -1.5
282,179 + +1.3
282,185 + +1.8
282,185 + -0.9
282,223 + -0.4
282,223 + +0.4
282,224 - +1.9
282,238 + +0.7
282,238 + +0.6
282,238 + -0.6
282,239 - +0.3
282,239 - +0.3
282,244 + +0.9
282,245 - -2.2
282,245 - -2.0
282,293 + IAI46_01270 0.11 -1.2
282,293 + IAI46_01270 0.11 +0.1
282,293 + IAI46_01270 0.11 +0.4
282,293 + IAI46_01270 0.11 -0.6
282,294 - IAI46_01270 0.11 +2.1
282,294 - IAI46_01270 0.11 -1.4
282,299 + IAI46_01270 0.12 +0.6
282,299 + IAI46_01270 0.12 +0.4
282,354 - IAI46_01270 0.24 +0.6
282,354 - IAI46_01270 0.24 -0.3
282,361 + IAI46_01270 0.26 -1.2
282,362 - IAI46_01270 0.26 -1.1
282,362 - IAI46_01270 0.26 +0.8
282,382 + IAI46_01270 0.31 -0.5
282,382 + IAI46_01270 0.31 -1.4
282,382 + IAI46_01270 0.31 +0.4
282,382 + IAI46_01270 0.31 +0.7
282,385 + IAI46_01270 0.31 -0.0
282,425 + IAI46_01270 0.40 -0.2
282,451 + IAI46_01270 0.46 +0.7
282,451 + IAI46_01270 0.46 -1.2
282,451 + IAI46_01270 0.46 +1.4
282,523 - IAI46_01270 0.62 -0.5
282,581 - IAI46_01270 0.75 -0.6
282,612 - IAI46_01270 0.82 +0.1
282,685 + -0.6
282,685 + +1.7
282,686 - -1.3
282,717 - +0.8
282,749 - IAI46_01275 0.12 +0.5
282,749 - IAI46_01275 0.12 +1.6
282,749 - IAI46_01275 0.12 +0.1
282,749 - IAI46_01275 0.12 -0.1
282,749 - IAI46_01275 0.12 -0.2
282,769 + IAI46_01275 0.17 +0.3
282,804 + IAI46_01275 0.24 -0.1
282,805 - IAI46_01275 0.25 +2.8
282,843 + IAI46_01275 0.33 +0.5
282,856 - IAI46_01275 0.35 -0.4
282,856 - IAI46_01275 0.35 +0.8
282,930 + IAI46_01275 0.51 -0.8
282,930 + IAI46_01275 0.51 -0.2
282,931 - IAI46_01275 0.52 -0.3
282,958 + IAI46_01275 0.57 +0.9
282,959 - IAI46_01275 0.58 -2.7
282,959 - IAI46_01275 0.58 +0.4
282,959 - IAI46_01275 0.58 +2.0
282,965 - IAI46_01275 0.59 -1.0
282,991 - IAI46_01275 0.65 +2.4
282,991 - IAI46_01275 0.65 -0.8
282,994 + IAI46_01275 0.65 -0.9
282,994 + IAI46_01275 0.65 +2.6
282,995 - IAI46_01275 0.65 +0.2
283,003 - IAI46_01275 0.67 +0.1
283,014 + IAI46_01275 0.69 -1.1
283,033 - IAI46_01275 0.74 -0.5
283,066 - IAI46_01275 0.81 +0.6
283,069 + IAI46_01275 0.81 -1.6
283,069 + IAI46_01275 0.81 +0.7
283,070 + IAI46_01275 0.82 +0.7
283,070 - IAI46_01275 0.82 -0.7
283,070 - IAI46_01275 0.82 +0.1
283,080 + IAI46_01275 0.84 -1.3
283,133 + -0.6
283,134 - +1.2
283,134 - +1.9
283,218 + +1.9
283,256 + -1.5
283,256 + +0.8
283,257 - +0.8
283,286 + +0.6
283,286 + +0.7
283,358 - IAI46_01280 0.16 +1.2
283,361 + IAI46_01280 0.16 +0.4
283,362 - IAI46_01280 0.16 +1.1
283,372 + IAI46_01280 0.17 +1.0
283,513 + IAI46_01280 0.28 -0.7
283,552 + IAI46_01280 0.31 -1.0
283,552 + IAI46_01280 0.31 +0.8
283,552 + IAI46_01280 0.31 +0.5
283,552 + IAI46_01280 0.31 +0.8
283,553 - IAI46_01280 0.31 +2.0
283,555 - IAI46_01280 0.31 +1.0
283,690 + IAI46_01280 0.41 -2.1
283,758 + IAI46_01280 0.46 -1.0
283,758 + IAI46_01280 0.46 +2.1
283,758 + IAI46_01280 0.46 -0.0
283,762 + IAI46_01280 0.47 -0.7
283,762 + IAI46_01280 0.47 +0.4
283,762 + IAI46_01280 0.47 -0.8
283,774 + IAI46_01280 0.48 -0.1
283,803 + IAI46_01280 0.50 -2.1
283,909 + IAI46_01280 0.58 -1.5
283,943 + IAI46_01280 0.61 +0.8
283,969 - IAI46_01280 0.63 +0.2
283,969 - IAI46_01280 0.63 +1.1
283,969 - IAI46_01280 0.63 +1.2
284,087 - IAI46_01280 0.72 -1.1
284,100 - IAI46_01280 0.73 +1.4
284,106 + IAI46_01280 0.73 +0.8
284,149 + IAI46_01280 0.77 -2.5
284,202 - IAI46_01280 0.81 +0.2
284,260 + IAI46_01280 0.85 +0.6
284,323 + -0.2
284,325 + +1.9
284,326 - -2.4
284,333 + +0.2
284,455 + -1.9
284,490 - -2.3
284,497 - -3.0
284,502 - IAI46_01285 0.10 +0.5
284,504 + IAI46_01285 0.11 +0.8
284,505 - IAI46_01285 0.11 +1.2
284,505 - IAI46_01285 0.11 +0.5
284,537 + IAI46_01285 0.15 -0.1
284,572 + IAI46_01285 0.19 -1.4
284,598 - IAI46_01285 0.22 +0.8
284,645 - IAI46_01285 0.28 +0.1
284,645 - IAI46_01285 0.28 +1.4
284,655 + IAI46_01285 0.29 +1.0
284,655 + IAI46_01285 0.29 +1.1
284,656 - IAI46_01285 0.29 -2.1
284,659 + IAI46_01285 0.30 +0.8
284,660 - IAI46_01285 0.30 -0.2
284,660 - IAI46_01285 0.30 +0.7
284,660 - IAI46_01285 0.30 +0.5
284,660 - IAI46_01285 0.30 -1.4
284,660 - IAI46_01285 0.30 -0.1
284,660 - IAI46_01285 0.30 +0.9
284,690 - IAI46_01285 0.33 -2.3
284,804 + IAI46_01285 0.47 +1.5
284,818 + IAI46_01285 0.49 -0.1
284,818 + IAI46_01285 0.49 -0.0
284,819 - IAI46_01285 0.49 -3.1
284,820 + IAI46_01285 0.49 +1.0
284,820 + IAI46_01285 0.49 +0.6
284,820 + IAI46_01285 0.49 -1.8
284,820 + IAI46_01285 0.49 +2.2
284,820 + IAI46_01285 0.49 +0.2
284,821 - IAI46_01285 0.50 +0.3
284,857 + IAI46_01285 0.54 +0.5
284,858 - IAI46_01285 0.54 -2.5
284,858 - IAI46_01285 0.54 +0.4
284,860 + IAI46_01285 0.54 -1.3
284,889 + IAI46_01285 0.58 +0.0
284,889 + IAI46_01285 0.58 +0.1
284,889 + IAI46_01285 0.58 -1.6
284,916 - IAI46_01285 0.61 +0.3
284,950 + IAI46_01285 0.65 +1.9
284,950 + IAI46_01285 0.65 -0.2
284,951 - IAI46_01285 0.65 +1.4
284,951 - IAI46_01285 0.65 -1.2
284,954 + IAI46_01285 0.66 +2.6
284,954 + IAI46_01285 0.66 -0.2
284,955 - IAI46_01285 0.66 -2.6
284,955 - IAI46_01285 0.66 +1.9
284,955 - IAI46_01285 0.66 +0.4
284,955 - IAI46_01285 0.66 -1.7
284,955 - IAI46_01285 0.66 +0.8
284,955 - IAI46_01285 0.66 -0.4
285,016 - IAI46_01285 0.73 +1.9
285,016 - IAI46_01285 0.73 +1.6
285,016 - IAI46_01285 0.73 +1.2
285,016 - IAI46_01285 0.73 -1.9
285,024 - IAI46_01285 0.74 +1.0
285,059 - IAI46_01285 0.79 +1.4
285,059 - IAI46_01285 0.79 +1.2
285,085 + IAI46_01285 0.82 -0.2
285,086 - IAI46_01285 0.82 +1.9
285,086 - IAI46_01285 0.82 -1.2
285,087 + IAI46_01285 0.82 +0.3
285,088 - IAI46_01285 0.82 -0.4
285,088 - IAI46_01285 0.82 +0.7
285,088 - IAI46_01285 0.82 +1.5
285,264 + -0.0
285,265 - -1.5
285,266 + -2.1
285,266 + +0.9
285,266 + +1.2
285,267 - +0.1
285,267 - -0.6
285,372 - +0.4
285,372 - -3.1
285,380 + +0.4
285,381 - +0.2
285,386 + -0.2
285,387 - -3.1
285,387 - -2.3
285,387 - +1.3
285,387 - -2.6
285,390 + +0.5
285,390 + +0.4
285,391 - -1.1
285,391 - +0.8
285,391 - -0.5
285,397 + -0.3
285,397 + +0.5
285,397 + -1.5
285,397 + +0.3
285,397 + +0.5
285,397 + +0.8
285,397 + +0.9
285,397 + +1.3
285,398 - +1.4
285,398 - -0.1
285,398 - +1.5
285,398 - -1.9
285,398 - +0.7
285,399 + +0.1
285,399 + +1.2
285,399 + +0.9
285,400 - +0.8
285,400 - -1.0
285,400 - -0.7
285,400 - -1.0
285,444 - +0.4
285,444 - +0.9

Or see this region's nucleotide sequence