Experiment: Cadmium acetate 40 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_00975 and IAI46_00980 are separated by 3 nucleotides IAI46_00980 and IAI46_00985 are separated by 105 nucleotides IAI46_00985 and IAI46_00990 are separated by 315 nucleotides
IAI46_00975: IAI46_00975 - high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG, at 218,595 to 219,362
_00975
IAI46_00980: IAI46_00980 - high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF, at 219,366 to 220,067
_00980
IAI46_00985: IAI46_00985 - PLP-dependent aminotransferase family protein, at 220,173 to 221,360
_00985
IAI46_00990: IAI46_00990 - sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB, at 221,676 to 222,995
_00990
Position (kb) 220
221
222 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 219.206 kb on + strand, within IAI46_00975 at 219.206 kb on + strand, within IAI46_00975 at 219.206 kb on + strand, within IAI46_00975 at 219.206 kb on + strand, within IAI46_00975 at 219.206 kb on + strand, within IAI46_00975 at 219.206 kb on + strand, within IAI46_00975 at 219.206 kb on + strand, within IAI46_00975 at 219.206 kb on + strand, within IAI46_00975 at 219.206 kb on + strand, within IAI46_00975 at 219.207 kb on - strand, within IAI46_00975 at 219.266 kb on + strand, within IAI46_00975 at 219.267 kb on - strand, within IAI46_00975 at 219.267 kb on - strand, within IAI46_00975 at 219.267 kb on - strand, within IAI46_00975 at 219.267 kb on - strand, within IAI46_00975 at 219.270 kb on + strand, within IAI46_00975 at 219.270 kb on + strand, within IAI46_00975 at 219.271 kb on - strand, within IAI46_00975 at 219.271 kb on - strand, within IAI46_00975 at 219.271 kb on - strand, within IAI46_00975 at 219.348 kb on + strand at 219.348 kb on + strand at 219.360 kb on + strand at 219.361 kb on - strand at 219.361 kb on - strand at 219.366 kb on - strand at 219.377 kb on + strand at 219.425 kb on + strand at 219.436 kb on + strand at 219.437 kb on - strand, within IAI46_00980 at 219.437 kb on - strand, within IAI46_00980 at 219.437 kb on - strand, within IAI46_00980 at 219.482 kb on + strand, within IAI46_00980 at 219.561 kb on - strand, within IAI46_00980 at 219.635 kb on + strand, within IAI46_00980 at 219.690 kb on + strand, within IAI46_00980 at 219.690 kb on + strand, within IAI46_00980 at 219.691 kb on - strand, within IAI46_00980 at 219.746 kb on + strand, within IAI46_00980 at 219.797 kb on - strand, within IAI46_00980 at 219.975 kb on + strand, within IAI46_00980 at 219.976 kb on - strand, within IAI46_00980 at 219.976 kb on - strand, within IAI46_00980 at 219.979 kb on + strand, within IAI46_00980 at 219.979 kb on + strand, within IAI46_00980 at 219.979 kb on + strand, within IAI46_00980 at 219.980 kb on - strand, within IAI46_00980 at 220.010 kb on + strand at 220.010 kb on + strand at 220.011 kb on - strand at 220.011 kb on - strand at 220.053 kb on + strand at 220.053 kb on + strand at 220.054 kb on - strand at 220.127 kb on + strand at 220.138 kb on + strand at 220.189 kb on + strand at 220.189 kb on + strand at 220.208 kb on - strand at 220.250 kb on + strand at 220.250 kb on + strand at 220.251 kb on - strand at 220.251 kb on - strand at 220.251 kb on - strand at 220.251 kb on - strand at 220.552 kb on - strand, within IAI46_00985 at 220.677 kb on + strand, within IAI46_00985 at 220.677 kb on + strand, within IAI46_00985 at 220.677 kb on + strand, within IAI46_00985 at 220.677 kb on + strand, within IAI46_00985 at 220.677 kb on + strand, within IAI46_00985 at 220.678 kb on - strand, within IAI46_00985 at 220.678 kb on - strand, within IAI46_00985 at 220.678 kb on - strand, within IAI46_00985 at 220.678 kb on - strand, within IAI46_00985 at 220.678 kb on - strand, within IAI46_00985 at 220.678 kb on - strand, within IAI46_00985 at 220.874 kb on + strand, within IAI46_00985 at 220.874 kb on + strand, within IAI46_00985 at 220.874 kb on + strand, within IAI46_00985 at 220.874 kb on + strand, within IAI46_00985 at 220.874 kb on + strand, within IAI46_00985 at 220.874 kb on + strand, within IAI46_00985 at 220.874 kb on + strand, within IAI46_00985 at 220.874 kb on + strand, within IAI46_00985 at 220.874 kb on + strand, within IAI46_00985 at 220.874 kb on + strand, within IAI46_00985 at 220.875 kb on - strand, within IAI46_00985 at 220.875 kb on - strand, within IAI46_00985 at 220.875 kb on - strand, within IAI46_00985 at 220.875 kb on - strand, within IAI46_00985 at 220.875 kb on - strand, within IAI46_00985 at 220.875 kb on - strand, within IAI46_00985 at 220.875 kb on - strand, within IAI46_00985 at 220.875 kb on - strand, within IAI46_00985 at 220.878 kb on + strand, within IAI46_00985 at 220.878 kb on + strand, within IAI46_00985 at 220.878 kb on + strand, within IAI46_00985 at 220.879 kb on - strand, within IAI46_00985 at 220.879 kb on - strand, within IAI46_00985 at 220.879 kb on - strand, within IAI46_00985 at 220.879 kb on - strand, within IAI46_00985 at 220.880 kb on + strand, within IAI46_00985 at 220.955 kb on + strand, within IAI46_00985 at 220.955 kb on + strand, within IAI46_00985 at 221.017 kb on + strand, within IAI46_00985 at 221.017 kb on + strand, within IAI46_00985 at 221.017 kb on + strand, within IAI46_00985 at 221.017 kb on + strand, within IAI46_00985 at 221.017 kb on + strand, within IAI46_00985 at 221.018 kb on - strand, within IAI46_00985 at 221.018 kb on - strand, within IAI46_00985 at 221.018 kb on - strand, within IAI46_00985 at 221.018 kb on - strand, within IAI46_00985 at 221.018 kb on - strand, within IAI46_00985 at 221.018 kb on - strand, within IAI46_00985 at 221.025 kb on + strand, within IAI46_00985 at 221.026 kb on - strand, within IAI46_00985 at 221.026 kb on - strand, within IAI46_00985 at 221.076 kb on + strand, within IAI46_00985 at 221.133 kb on - strand, within IAI46_00985 at 221.133 kb on - strand, within IAI46_00985 at 221.133 kb on - strand, within IAI46_00985 at 221.133 kb on - strand, within IAI46_00985 at 221.253 kb on + strand at 221.253 kb on + strand at 221.254 kb on - strand at 221.283 kb on - strand at 221.431 kb on + strand at 221.431 kb on + strand at 221.431 kb on + strand at 221.431 kb on + strand at 221.431 kb on + strand at 221.431 kb on + strand at 221.431 kb on + strand at 221.432 kb on - strand at 221.432 kb on - strand at 221.432 kb on - strand at 221.432 kb on - strand at 221.432 kb on - strand at 221.445 kb on - strand at 221.445 kb on - strand at 221.445 kb on - strand at 221.481 kb on - strand at 221.481 kb on - strand at 221.481 kb on - strand at 221.533 kb on - strand at 221.533 kb on - strand at 221.544 kb on - strand at 221.581 kb on + strand at 221.581 kb on + strand at 221.581 kb on + strand at 221.582 kb on - strand at 221.582 kb on - strand at 221.582 kb on - strand at 221.585 kb on + strand at 221.585 kb on + strand at 221.585 kb on + strand at 221.585 kb on + strand at 221.586 kb on - strand at 221.586 kb on - strand at 221.586 kb on - strand at 221.586 kb on - strand at 221.587 kb on + strand at 221.587 kb on + strand at 221.587 kb on + strand at 221.587 kb on + strand at 221.588 kb on - strand at 221.588 kb on - strand at 221.588 kb on - strand at 221.588 kb on - strand at 221.588 kb on - strand at 221.591 kb on + strand at 221.591 kb on + strand at 221.592 kb on - strand at 221.592 kb on - strand at 221.592 kb on - strand at 221.592 kb on - strand at 221.651 kb on - strand at 221.651 kb on - strand at 221.651 kb on - strand at 221.672 kb on - strand at 221.672 kb on - strand at 221.672 kb on - strand at 221.672 kb on - strand at 221.685 kb on + strand at 221.685 kb on + strand at 221.685 kb on + strand at 221.685 kb on + strand at 221.686 kb on - strand at 221.686 kb on - strand at 221.686 kb on - strand at 221.864 kb on + strand, within IAI46_00990 at 221.864 kb on + strand, within IAI46_00990 at 221.865 kb on - strand, within IAI46_00990 at 221.865 kb on - strand, within IAI46_00990 at 221.874 kb on + strand, within IAI46_00990 at 221.875 kb on - strand, within IAI46_00990 at 221.907 kb on + strand, within IAI46_00990 at 221.918 kb on + strand, within IAI46_00990 at 221.918 kb on + strand, within IAI46_00990 at 221.943 kb on + strand, within IAI46_00990 at 221.943 kb on + strand, within IAI46_00990 at 221.944 kb on - strand, within IAI46_00990 at 221.944 kb on - strand, within IAI46_00990 at 221.944 kb on - strand, within IAI46_00990 at 221.944 kb on - strand, within IAI46_00990 at 221.994 kb on + strand, within IAI46_00990 at 221.994 kb on + strand, within IAI46_00990 at 222.005 kb on + strand, within IAI46_00990 at 222.006 kb on - strand, within IAI46_00990 at 222.047 kb on + strand, within IAI46_00990 at 222.048 kb on - strand, within IAI46_00990 at 222.048 kb on - strand, within IAI46_00990 at 222.063 kb on + strand, within IAI46_00990 at 222.063 kb on + strand, within IAI46_00990 at 222.063 kb on + strand, within IAI46_00990 at 222.064 kb on - strand, within IAI46_00990 at 222.064 kb on - strand, within IAI46_00990 at 222.064 kb on - strand, within IAI46_00990 at 222.064 kb on - strand, within IAI46_00990 at 222.126 kb on + strand, within IAI46_00990 at 222.126 kb on + strand, within IAI46_00990 at 222.126 kb on + strand, within IAI46_00990 at 222.127 kb on - strand, within IAI46_00990 at 222.127 kb on - strand, within IAI46_00990 at 222.127 kb on - strand, within IAI46_00990 at 222.129 kb on + strand, within IAI46_00990 at 222.129 kb on + strand, within IAI46_00990 at 222.129 kb on + strand, within IAI46_00990 at 222.130 kb on - strand, within IAI46_00990 at 222.130 kb on - strand, within IAI46_00990 at 222.130 kb on - strand, within IAI46_00990 at 222.244 kb on - strand, within IAI46_00990
Per-strain Table
Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic remove 219,206 + IAI46_00975 0.80 +1.2 219,206 + IAI46_00975 0.80 +0.3 219,206 + IAI46_00975 0.80 +0.2 219,206 + IAI46_00975 0.80 -0.3 219,206 + IAI46_00975 0.80 +1.0 219,206 + IAI46_00975 0.80 -2.0 219,206 + IAI46_00975 0.80 +0.6 219,206 + IAI46_00975 0.80 +0.5 219,206 + IAI46_00975 0.80 +0.9 219,207 - IAI46_00975 0.80 -2.0 219,266 + IAI46_00975 0.87 +0.3 219,267 - IAI46_00975 0.88 +0.0 219,267 - IAI46_00975 0.88 -1.3 219,267 - IAI46_00975 0.88 +0.8 219,267 - IAI46_00975 0.88 -1.8 219,270 + IAI46_00975 0.88 -2.2 219,270 + IAI46_00975 0.88 -1.8 219,271 - IAI46_00975 0.88 +1.0 219,271 - IAI46_00975 0.88 +0.5 219,271 - IAI46_00975 0.88 +0.2 219,348 + -1.2 219,348 + -0.1 219,360 + -1.1 219,361 - +0.8 219,361 - +1.5 219,366 - -2.4 219,377 + -1.2 219,425 + -0.1 219,436 + -0.3 219,437 - IAI46_00980 0.10 +1.8 219,437 - IAI46_00980 0.10 +0.8 219,437 - IAI46_00980 0.10 -1.0 219,482 + IAI46_00980 0.17 -0.4 219,561 - IAI46_00980 0.28 +1.6 219,635 + IAI46_00980 0.38 -0.2 219,690 + IAI46_00980 0.46 +0.2 219,690 + IAI46_00980 0.46 -3.0 219,691 - IAI46_00980 0.46 -3.4 219,746 + IAI46_00980 0.54 -0.3 219,797 - IAI46_00980 0.61 -0.1 219,975 + IAI46_00980 0.87 +0.8 219,976 - IAI46_00980 0.87 +0.5 219,976 - IAI46_00980 0.87 -2.2 219,979 + IAI46_00980 0.87 -0.5 219,979 + IAI46_00980 0.87 -0.7 219,979 + IAI46_00980 0.87 +0.7 219,980 - IAI46_00980 0.87 -0.3 220,010 + +0.8 220,010 + +1.4 220,011 - -0.6 220,011 - -0.9 220,053 + -1.1 220,053 + -0.3 220,054 - +2.0 220,127 + +0.6 220,138 + +1.2 220,189 + -0.1 220,189 + -2.8 220,208 - -0.8 220,250 + -0.8 220,250 + +0.2 220,251 - +0.3 220,251 - +1.5 220,251 - +0.8 220,251 - +0.1 220,552 - IAI46_00985 0.32 -0.6 220,677 + IAI46_00985 0.42 +1.0 220,677 + IAI46_00985 0.42 -1.0 220,677 + IAI46_00985 0.42 +1.8 220,677 + IAI46_00985 0.42 +0.4 220,677 + IAI46_00985 0.42 +1.3 220,678 - IAI46_00985 0.43 +0.4 220,678 - IAI46_00985 0.43 -1.1 220,678 - IAI46_00985 0.43 -2.8 220,678 - IAI46_00985 0.43 -3.1 220,678 - IAI46_00985 0.43 -0.1 220,678 - IAI46_00985 0.43 -1.7 220,874 + IAI46_00985 0.59 +0.5 220,874 + IAI46_00985 0.59 +0.9 220,874 + IAI46_00985 0.59 -0.9 220,874 + IAI46_00985 0.59 +2.2 220,874 + IAI46_00985 0.59 -1.6 220,874 + IAI46_00985 0.59 +1.0 220,874 + IAI46_00985 0.59 -2.1 220,874 + IAI46_00985 0.59 -0.5 220,874 + IAI46_00985 0.59 +1.6 220,874 + IAI46_00985 0.59 +0.1 220,875 - IAI46_00985 0.59 -0.2 220,875 - IAI46_00985 0.59 -0.6 220,875 - IAI46_00985 0.59 -0.4 220,875 - IAI46_00985 0.59 +1.3 220,875 - IAI46_00985 0.59 +0.4 220,875 - IAI46_00985 0.59 -0.3 220,875 - IAI46_00985 0.59 -2.4 220,875 - IAI46_00985 0.59 +0.4 220,878 + IAI46_00985 0.59 -1.1 220,878 + IAI46_00985 0.59 -2.3 220,878 + IAI46_00985 0.59 +1.3 220,879 - IAI46_00985 0.59 -1.1 220,879 - IAI46_00985 0.59 -1.9 220,879 - IAI46_00985 0.59 +1.5 220,879 - IAI46_00985 0.59 +1.0 220,880 + IAI46_00985 0.60 -1.4 220,955 + IAI46_00985 0.66 -1.3 220,955 + IAI46_00985 0.66 +0.3 221,017 + IAI46_00985 0.71 +0.6 221,017 + IAI46_00985 0.71 +1.2 221,017 + IAI46_00985 0.71 +0.6 221,017 + IAI46_00985 0.71 -0.6 221,017 + IAI46_00985 0.71 +1.2 221,018 - IAI46_00985 0.71 +0.2 221,018 - IAI46_00985 0.71 -2.4 221,018 - IAI46_00985 0.71 -2.8 221,018 - IAI46_00985 0.71 -0.1 221,018 - IAI46_00985 0.71 -0.3 221,018 - IAI46_00985 0.71 +1.9 221,025 + IAI46_00985 0.72 +1.0 221,026 - IAI46_00985 0.72 -2.2 221,026 - IAI46_00985 0.72 -0.0 221,076 + IAI46_00985 0.76 +1.0 221,133 - IAI46_00985 0.81 -1.4 221,133 - IAI46_00985 0.81 +0.4 221,133 - IAI46_00985 0.81 +0.5 221,133 - IAI46_00985 0.81 -3.5 221,253 + +0.7 221,253 + +0.1 221,254 - +1.3 221,283 - -0.3 221,431 + +0.8 221,431 + +2.4 221,431 + +0.9 221,431 + -0.1 221,431 + +1.0 221,431 + +1.6 221,431 + +0.1 221,432 - -1.7 221,432 - +0.4 221,432 - -1.2 221,432 - -0.3 221,432 - +0.3 221,445 - +0.8 221,445 - +0.5 221,445 - -1.7 221,481 - -0.0 221,481 - -0.7 221,481 - +1.4 221,533 - +0.2 221,533 - +0.3 221,544 - +1.0 221,581 + +1.2 221,581 + +0.6 221,581 + -1.6 221,582 - -1.6 221,582 - +0.6 221,582 - +1.6 221,585 + -1.0 221,585 + -0.2 221,585 + +1.8 221,585 + +1.9 221,586 - -0.1 221,586 - -1.5 221,586 - +1.2 221,586 - +0.7 221,587 + +0.9 221,587 + -2.5 221,587 + -1.3 221,587 + -0.6 221,588 - -1.4 221,588 - -2.8 221,588 - +0.7 221,588 - -1.2 221,588 - -0.7 221,591 + -1.2 221,591 + -1.0 221,592 - +1.6 221,592 - +1.6 221,592 - -0.3 221,592 - -0.1 221,651 - +1.7 221,651 - -0.7 221,651 - +0.5 221,672 - +1.0 221,672 - -2.7 221,672 - +0.6 221,672 - +0.4 221,685 + +0.5 221,685 + +0.5 221,685 + +0.3 221,685 + +1.1 221,686 - -0.4 221,686 - -1.0 221,686 - -1.9 221,864 + IAI46_00990 0.14 -1.7 221,864 + IAI46_00990 0.14 -0.9 221,865 - IAI46_00990 0.14 +1.4 221,865 - IAI46_00990 0.14 -0.7 221,874 + IAI46_00990 0.15 +0.0 221,875 - IAI46_00990 0.15 -0.9 221,907 + IAI46_00990 0.17 -0.4 221,918 + IAI46_00990 0.18 +1.6 221,918 + IAI46_00990 0.18 -1.8 221,943 + IAI46_00990 0.20 -2.2 221,943 + IAI46_00990 0.20 -0.7 221,944 - IAI46_00990 0.20 -2.7 221,944 - IAI46_00990 0.20 +0.4 221,944 - IAI46_00990 0.20 +0.5 221,944 - IAI46_00990 0.20 +0.1 221,994 + IAI46_00990 0.24 -1.6 221,994 + IAI46_00990 0.24 +1.6 222,005 + IAI46_00990 0.25 +1.2 222,006 - IAI46_00990 0.25 +1.6 222,047 + IAI46_00990 0.28 -1.9 222,048 - IAI46_00990 0.28 +1.5 222,048 - IAI46_00990 0.28 -0.6 222,063 + IAI46_00990 0.29 -0.3 222,063 + IAI46_00990 0.29 +1.3 222,063 + IAI46_00990 0.29 -2.3 222,064 - IAI46_00990 0.29 +1.1 222,064 - IAI46_00990 0.29 +0.6 222,064 - IAI46_00990 0.29 -0.8 222,064 - IAI46_00990 0.29 +1.3 222,126 + IAI46_00990 0.34 +0.3 222,126 + IAI46_00990 0.34 +1.1 222,126 + IAI46_00990 0.34 +0.2 222,127 - IAI46_00990 0.34 +0.7 222,127 - IAI46_00990 0.34 -0.9 222,127 - IAI46_00990 0.34 +0.2 222,129 + IAI46_00990 0.34 -1.2 222,129 + IAI46_00990 0.34 +0.5 222,129 + IAI46_00990 0.34 +1.2 222,130 - IAI46_00990 0.34 -3.5 222,130 - IAI46_00990 0.34 +0.2 222,130 - IAI46_00990 0.34 +0.2 222,244 - IAI46_00990 0.43 +2.2
Or see this region's nucleotide sequence