Strain Fitness in Serratia liquefaciens MT49 around IAI46_00575

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00570 and IAI46_00575 are separated by 6 nucleotidesIAI46_00575 and IAI46_00580 are separated by 117 nucleotides IAI46_00570: IAI46_00570 - exopolyphosphatase, at 134,792 to 136,288 _00570 IAI46_00575: IAI46_00575 - ATP-dependent RNA helicase RhlB, at 136,295 to 137,581 _00575 IAI46_00580: IAI46_00580 - thioredoxin TrxA, at 137,699 to 138,025 _00580 Position (kb) 136 137 138Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 135.367 kb on + strand, within IAI46_00570at 135.497 kb on + strand, within IAI46_00570at 135.519 kb on - strand, within IAI46_00570at 135.763 kb on + strand, within IAI46_00570at 135.763 kb on + strand, within IAI46_00570at 135.763 kb on + strand, within IAI46_00570at 135.814 kb on + strand, within IAI46_00570at 135.816 kb on + strand, within IAI46_00570at 135.816 kb on + strand, within IAI46_00570at 135.817 kb on - strand, within IAI46_00570at 135.817 kb on - strand, within IAI46_00570at 135.817 kb on - strand, within IAI46_00570at 135.817 kb on - strand, within IAI46_00570at 135.918 kb on - strand, within IAI46_00570at 135.918 kb on - strand, within IAI46_00570at 135.927 kb on + strand, within IAI46_00570at 135.927 kb on + strand, within IAI46_00570at 135.928 kb on - strand, within IAI46_00570at 136.202 kb on - strandat 136.266 kb on + strandat 136.267 kb on - strandat 136.309 kb on + strandat 136.309 kb on + strandat 136.351 kb on + strandat 136.351 kb on + strandat 136.431 kb on + strand, within IAI46_00575at 136.432 kb on - strand, within IAI46_00575at 136.461 kb on + strand, within IAI46_00575at 136.461 kb on + strand, within IAI46_00575at 136.461 kb on + strand, within IAI46_00575at 136.461 kb on + strand, within IAI46_00575at 136.462 kb on - strand, within IAI46_00575at 136.563 kb on + strand, within IAI46_00575at 136.564 kb on - strand, within IAI46_00575at 136.591 kb on - strand, within IAI46_00575at 136.591 kb on - strand, within IAI46_00575at 136.657 kb on + strand, within IAI46_00575at 136.733 kb on + strand, within IAI46_00575at 136.733 kb on + strand, within IAI46_00575at 136.734 kb on - strand, within IAI46_00575at 136.865 kb on - strand, within IAI46_00575at 136.872 kb on + strand, within IAI46_00575at 136.872 kb on + strand, within IAI46_00575at 136.888 kb on + strand, within IAI46_00575at 136.929 kb on + strand, within IAI46_00575at 136.929 kb on + strand, within IAI46_00575at 136.929 kb on + strand, within IAI46_00575at 136.930 kb on - strand, within IAI46_00575at 136.968 kb on - strand, within IAI46_00575at 136.974 kb on + strand, within IAI46_00575at 137.070 kb on + strand, within IAI46_00575at 137.070 kb on + strand, within IAI46_00575at 137.070 kb on + strand, within IAI46_00575at 137.071 kb on - strand, within IAI46_00575at 137.071 kb on - strand, within IAI46_00575at 137.074 kb on + strand, within IAI46_00575at 137.074 kb on + strand, within IAI46_00575at 137.074 kb on + strand, within IAI46_00575at 137.074 kb on + strand, within IAI46_00575at 137.075 kb on - strand, within IAI46_00575at 137.075 kb on - strand, within IAI46_00575at 137.075 kb on - strand, within IAI46_00575at 137.124 kb on + strand, within IAI46_00575at 137.124 kb on + strand, within IAI46_00575at 137.124 kb on + strand, within IAI46_00575at 137.124 kb on + strand, within IAI46_00575at 137.125 kb on - strand, within IAI46_00575at 137.125 kb on - strand, within IAI46_00575at 137.125 kb on - strand, within IAI46_00575at 137.125 kb on - strand, within IAI46_00575at 137.125 kb on - strand, within IAI46_00575at 137.125 kb on - strand, within IAI46_00575at 137.140 kb on - strand, within IAI46_00575at 137.158 kb on + strand, within IAI46_00575at 137.158 kb on + strand, within IAI46_00575at 137.161 kb on + strand, within IAI46_00575at 137.227 kb on - strand, within IAI46_00575at 137.384 kb on - strand, within IAI46_00575at 137.391 kb on - strand, within IAI46_00575at 137.602 kb on - strandat 137.646 kb on + strandat 137.646 kb on + strandat 137.646 kb on + strandat 137.647 kb on - strandat 137.647 kb on - strandat 137.647 kb on - strandat 137.647 kb on - strandat 137.674 kb on + strandat 137.675 kb on - strandat 137.693 kb on + strandat 137.693 kb on + strandat 137.708 kb on - strandat 137.714 kb on - strandat 137.905 kb on + strand, within IAI46_00580at 137.905 kb on + strand, within IAI46_00580at 137.905 kb on + strand, within IAI46_00580at 137.905 kb on + strand, within IAI46_00580at 137.905 kb on + strand, within IAI46_00580at 137.906 kb on - strand, within IAI46_00580at 137.906 kb on - strand, within IAI46_00580at 137.906 kb on - strand, within IAI46_00580at 137.906 kb on - strand, within IAI46_00580at 137.906 kb on - strand, within IAI46_00580at 137.909 kb on + strand, within IAI46_00580at 137.909 kb on + strand, within IAI46_00580at 137.909 kb on + strand, within IAI46_00580at 137.909 kb on + strand, within IAI46_00580at 137.924 kb on - strand, within IAI46_00580at 137.929 kb on + strand, within IAI46_00580at 137.969 kb on + strand, within IAI46_00580at 138.023 kb on + strandat 138.041 kb on + strandat 138.041 kb on + strandat 138.101 kb on + strandat 138.101 kb on + strandat 138.101 kb on + strandat 138.101 kb on + strandat 138.101 kb on + strandat 138.101 kb on + strandat 138.101 kb on + strandat 138.102 kb on - strandat 138.102 kb on - strandat 138.102 kb on - strandat 138.102 kb on - strandat 138.102 kb on - strandat 138.102 kb on - strandat 138.102 kb on - strandat 138.102 kb on - strandat 138.179 kb on + strandat 138.204 kb on + strandat 138.227 kb on + strandat 138.227 kb on + strandat 138.227 kb on + strandat 138.227 kb on + strandat 138.227 kb on + strandat 138.367 kb on + strandat 138.474 kb on + strandat 138.535 kb on + strandat 138.535 kb on + strandat 138.535 kb on + strandat 138.535 kb on + strandat 138.535 kb on + strandat 138.537 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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135,367 + IAI46_00570 0.38 +1.7
135,497 + IAI46_00570 0.47 -1.6
135,519 - IAI46_00570 0.49 +1.4
135,763 + IAI46_00570 0.65 +0.4
135,763 + IAI46_00570 0.65 -0.4
135,763 + IAI46_00570 0.65 -0.7
135,814 + IAI46_00570 0.68 +0.6
135,816 + IAI46_00570 0.68 -0.7
135,816 + IAI46_00570 0.68 +1.4
135,817 - IAI46_00570 0.68 -0.6
135,817 - IAI46_00570 0.68 +3.0
135,817 - IAI46_00570 0.68 +1.9
135,817 - IAI46_00570 0.68 -0.3
135,918 - IAI46_00570 0.75 -0.9
135,918 - IAI46_00570 0.75 +2.8
135,927 + IAI46_00570 0.76 +2.3
135,927 + IAI46_00570 0.76 +1.2
135,928 - IAI46_00570 0.76 -0.5
136,202 - -0.4
136,266 + -0.4
136,267 - +1.3
136,309 + -3.1
136,309 + +1.2
136,351 + -0.0
136,351 + +0.7
136,431 + IAI46_00575 0.11 +3.0
136,432 - IAI46_00575 0.11 +0.4
136,461 + IAI46_00575 0.13 -0.1
136,461 + IAI46_00575 0.13 +0.2
136,461 + IAI46_00575 0.13 -2.8
136,461 + IAI46_00575 0.13 +0.5
136,462 - IAI46_00575 0.13 +0.6
136,563 + IAI46_00575 0.21 -2.1
136,564 - IAI46_00575 0.21 -3.4
136,591 - IAI46_00575 0.23 -0.5
136,591 - IAI46_00575 0.23 -1.8
136,657 + IAI46_00575 0.28 +0.8
136,733 + IAI46_00575 0.34 -0.6
136,733 + IAI46_00575 0.34 -2.0
136,734 - IAI46_00575 0.34 -1.4
136,865 - IAI46_00575 0.44 -0.3
136,872 + IAI46_00575 0.45 -1.5
136,872 + IAI46_00575 0.45 +1.0
136,888 + IAI46_00575 0.46 +1.3
136,929 + IAI46_00575 0.49 -2.2
136,929 + IAI46_00575 0.49 +0.2
136,929 + IAI46_00575 0.49 +0.3
136,930 - IAI46_00575 0.49 -2.2
136,968 - IAI46_00575 0.52 -0.3
136,974 + IAI46_00575 0.53 +0.5
137,070 + IAI46_00575 0.60 -0.1
137,070 + IAI46_00575 0.60 +1.5
137,070 + IAI46_00575 0.60 +1.3
137,071 - IAI46_00575 0.60 -1.4
137,071 - IAI46_00575 0.60 -0.9
137,074 + IAI46_00575 0.61 -1.5
137,074 + IAI46_00575 0.61 +0.2
137,074 + IAI46_00575 0.61 -1.4
137,074 + IAI46_00575 0.61 +1.4
137,075 - IAI46_00575 0.61 +1.4
137,075 - IAI46_00575 0.61 -0.8
137,075 - IAI46_00575 0.61 +0.7
137,124 + IAI46_00575 0.64 -0.5
137,124 + IAI46_00575 0.64 +0.9
137,124 + IAI46_00575 0.64 +0.9
137,124 + IAI46_00575 0.64 +1.2
137,125 - IAI46_00575 0.64 +0.3
137,125 - IAI46_00575 0.64 -2.1
137,125 - IAI46_00575 0.64 -2.0
137,125 - IAI46_00575 0.64 -1.4
137,125 - IAI46_00575 0.64 +2.0
137,125 - IAI46_00575 0.64 +0.1
137,140 - IAI46_00575 0.66 -0.9
137,158 + IAI46_00575 0.67 +1.3
137,158 + IAI46_00575 0.67 -1.2
137,161 + IAI46_00575 0.67 -0.5
137,227 - IAI46_00575 0.72 -0.5
137,384 - IAI46_00575 0.85 -0.4
137,391 - IAI46_00575 0.85 +1.1
137,602 - +0.1
137,646 + -1.4
137,646 + +0.2
137,646 + +0.1
137,647 - +0.4
137,647 - +0.3
137,647 - +2.9
137,647 - -0.7
137,674 + -0.6
137,675 - +1.0
137,693 + -1.4
137,693 + -0.3
137,708 - +0.1
137,714 - -0.1
137,905 + IAI46_00580 0.63 -1.9
137,905 + IAI46_00580 0.63 +0.4
137,905 + IAI46_00580 0.63 +2.0
137,905 + IAI46_00580 0.63 +0.7
137,905 + IAI46_00580 0.63 -2.1
137,906 - IAI46_00580 0.63 +1.7
137,906 - IAI46_00580 0.63 +0.9
137,906 - IAI46_00580 0.63 +1.3
137,906 - IAI46_00580 0.63 -1.6
137,906 - IAI46_00580 0.63 +0.7
137,909 + IAI46_00580 0.64 +0.4
137,909 + IAI46_00580 0.64 +0.4
137,909 + IAI46_00580 0.64 +0.0
137,909 + IAI46_00580 0.64 +1.4
137,924 - IAI46_00580 0.69 +0.7
137,929 + IAI46_00580 0.70 -1.1
137,969 + IAI46_00580 0.83 +1.0
138,023 + +0.4
138,041 + +0.1
138,041 + +0.0
138,101 + -0.8
138,101 + +1.8
138,101 + -0.5
138,101 + +0.5
138,101 + -2.4
138,101 + +0.3
138,101 + -1.5
138,102 - -0.3
138,102 - -2.2
138,102 - +1.7
138,102 - +1.9
138,102 - +1.4
138,102 - +1.7
138,102 - +2.6
138,102 - +2.4
138,179 + -0.5
138,204 + +0.7
138,227 + +1.1
138,227 + +0.8
138,227 + +0.2
138,227 + +1.2
138,227 + -2.7
138,367 + +0.2
138,474 + -0.8
138,535 + -1.7
138,535 + -1.8
138,535 + +0.2
138,535 + -1.0
138,535 + +0.2
138,537 + +0.8

Or see this region's nucleotide sequence