Strain Fitness in Serratia liquefaciens MT49 around IAI46_00400

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00395 and IAI46_00400 are separated by 262 nucleotidesIAI46_00400 and IAI46_00405 are separated by 14 nucleotides IAI46_00395: IAI46_00395 - SDR family oxidoreductase, at 89,153 to 89,911 _00395 IAI46_00400: IAI46_00400 - PTS beta-glucoside transporter subunit IIABC, at 90,174 to 92,036 _00400 IAI46_00405: IAI46_00405 - 6-phospho-beta-glucosidase, at 92,051 to 93,454 _00405 Position (kb) 90 91 92 93Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 89.330 kb on + strand, within IAI46_00395at 89.330 kb on + strand, within IAI46_00395at 89.331 kb on - strand, within IAI46_00395at 89.331 kb on - strand, within IAI46_00395at 89.331 kb on - strand, within IAI46_00395at 89.331 kb on - strand, within IAI46_00395at 89.331 kb on - strand, within IAI46_00395at 89.348 kb on - strand, within IAI46_00395at 89.409 kb on + strand, within IAI46_00395at 89.409 kb on + strand, within IAI46_00395at 89.409 kb on + strand, within IAI46_00395at 89.409 kb on + strand, within IAI46_00395at 89.410 kb on - strand, within IAI46_00395at 89.422 kb on + strand, within IAI46_00395at 89.422 kb on + strand, within IAI46_00395at 89.423 kb on - strand, within IAI46_00395at 89.596 kb on + strand, within IAI46_00395at 89.596 kb on + strand, within IAI46_00395at 89.601 kb on + strand, within IAI46_00395at 89.689 kb on + strand, within IAI46_00395at 89.690 kb on - strand, within IAI46_00395at 89.710 kb on + strand, within IAI46_00395at 89.711 kb on - strand, within IAI46_00395at 89.711 kb on - strand, within IAI46_00395at 89.714 kb on - strand, within IAI46_00395at 89.768 kb on - strand, within IAI46_00395at 89.819 kb on + strand, within IAI46_00395at 89.819 kb on + strand, within IAI46_00395at 89.820 kb on - strand, within IAI46_00395at 89.820 kb on - strand, within IAI46_00395at 89.820 kb on - strand, within IAI46_00395at 89.820 kb on - strand, within IAI46_00395at 89.855 kb on + strandat 89.856 kb on - strandat 89.856 kb on - strandat 89.857 kb on + strandat 89.858 kb on - strandat 89.858 kb on - strandat 89.880 kb on + strandat 89.897 kb on + strandat 89.897 kb on + strandat 89.898 kb on - strandat 89.898 kb on - strandat 89.923 kb on - strandat 89.942 kb on + strandat 89.943 kb on - strandat 89.994 kb on + strandat 89.995 kb on - strandat 89.995 kb on - strandat 90.008 kb on + strandat 90.008 kb on + strandat 90.008 kb on + strandat 90.009 kb on - strandat 90.009 kb on - strandat 90.009 kb on - strandat 90.009 kb on - strandat 90.039 kb on + strandat 90.039 kb on + strandat 90.180 kb on + strandat 90.181 kb on - strandat 90.181 kb on - strandat 90.232 kb on + strandat 90.233 kb on - strandat 90.233 kb on - strandat 90.233 kb on - strandat 90.368 kb on - strand, within IAI46_00400at 90.368 kb on - strand, within IAI46_00400at 90.390 kb on + strand, within IAI46_00400at 90.391 kb on - strand, within IAI46_00400at 90.391 kb on - strand, within IAI46_00400at 90.503 kb on + strand, within IAI46_00400at 90.783 kb on + strand, within IAI46_00400at 90.783 kb on + strand, within IAI46_00400at 90.809 kb on + strand, within IAI46_00400at 90.810 kb on - strand, within IAI46_00400at 90.810 kb on - strand, within IAI46_00400at 90.817 kb on - strand, within IAI46_00400at 90.841 kb on + strand, within IAI46_00400at 90.914 kb on + strand, within IAI46_00400at 90.915 kb on - strand, within IAI46_00400at 90.918 kb on - strand, within IAI46_00400at 91.011 kb on + strand, within IAI46_00400at 91.023 kb on + strand, within IAI46_00400at 91.055 kb on + strand, within IAI46_00400at 91.056 kb on - strand, within IAI46_00400at 91.196 kb on + strand, within IAI46_00400at 91.217 kb on + strand, within IAI46_00400at 91.296 kb on + strand, within IAI46_00400at 91.392 kb on + strand, within IAI46_00400at 91.393 kb on - strand, within IAI46_00400at 91.393 kb on - strand, within IAI46_00400at 91.393 kb on - strand, within IAI46_00400at 91.518 kb on + strand, within IAI46_00400at 91.518 kb on + strand, within IAI46_00400at 91.519 kb on - strand, within IAI46_00400at 91.619 kb on - strand, within IAI46_00400at 91.619 kb on - strand, within IAI46_00400at 91.619 kb on - strand, within IAI46_00400at 91.664 kb on - strand, within IAI46_00400at 91.743 kb on - strand, within IAI46_00400at 91.806 kb on - strand, within IAI46_00400at 91.806 kb on - strand, within IAI46_00400at 91.807 kb on + strand, within IAI46_00400at 91.807 kb on + strand, within IAI46_00400at 91.807 kb on + strand, within IAI46_00400at 91.808 kb on - strand, within IAI46_00400at 91.808 kb on - strand, within IAI46_00400at 91.808 kb on - strand, within IAI46_00400at 91.808 kb on - strand, within IAI46_00400at 91.808 kb on - strand, within IAI46_00400at 91.808 kb on - strand, within IAI46_00400at 91.808 kb on - strand, within IAI46_00400at 91.808 kb on - strand, within IAI46_00400at 91.811 kb on + strand, within IAI46_00400at 91.811 kb on + strand, within IAI46_00400at 91.812 kb on - strand, within IAI46_00400at 91.812 kb on - strand, within IAI46_00400at 91.812 kb on - strand, within IAI46_00400at 91.845 kb on + strand, within IAI46_00400at 91.845 kb on + strand, within IAI46_00400at 91.845 kb on + strand, within IAI46_00400at 91.846 kb on - strand, within IAI46_00400at 91.846 kb on - strand, within IAI46_00400at 91.846 kb on - strand, within IAI46_00400at 91.846 kb on - strand, within IAI46_00400at 91.965 kb on + strandat 91.965 kb on + strandat 91.965 kb on + strandat 91.965 kb on + strandat 92.026 kb on + strandat 92.027 kb on - strandat 92.027 kb on - strandat 92.029 kb on + strandat 92.030 kb on - strandat 92.120 kb on + strandat 92.120 kb on + strandat 92.121 kb on - strandat 92.121 kb on - strandat 92.142 kb on + strandat 92.143 kb on - strandat 92.369 kb on + strand, within IAI46_00405at 92.370 kb on - strand, within IAI46_00405at 92.370 kb on - strand, within IAI46_00405at 92.400 kb on - strand, within IAI46_00405at 92.432 kb on + strand, within IAI46_00405at 92.433 kb on - strand, within IAI46_00405at 92.433 kb on - strand, within IAI46_00405at 92.445 kb on - strand, within IAI46_00405at 92.445 kb on - strand, within IAI46_00405at 92.507 kb on + strand, within IAI46_00405at 92.507 kb on + strand, within IAI46_00405at 92.508 kb on - strand, within IAI46_00405at 92.508 kb on - strand, within IAI46_00405at 92.531 kb on + strand, within IAI46_00405at 92.531 kb on + strand, within IAI46_00405at 92.531 kb on + strand, within IAI46_00405at 92.532 kb on - strand, within IAI46_00405at 92.533 kb on + strand, within IAI46_00405at 92.533 kb on + strand, within IAI46_00405at 92.533 kb on + strand, within IAI46_00405at 92.533 kb on + strand, within IAI46_00405at 92.534 kb on - strand, within IAI46_00405at 92.534 kb on - strand, within IAI46_00405at 92.575 kb on + strand, within IAI46_00405at 92.575 kb on + strand, within IAI46_00405at 92.576 kb on - strand, within IAI46_00405at 92.576 kb on - strand, within IAI46_00405at 92.576 kb on - strand, within IAI46_00405at 92.725 kb on + strand, within IAI46_00405at 92.725 kb on + strand, within IAI46_00405at 92.725 kb on + strand, within IAI46_00405at 92.726 kb on - strand, within IAI46_00405at 92.726 kb on - strand, within IAI46_00405at 92.747 kb on + strand, within IAI46_00405at 92.849 kb on + strand, within IAI46_00405at 92.849 kb on + strand, within IAI46_00405at 92.850 kb on - strand, within IAI46_00405at 92.850 kb on - strand, within IAI46_00405at 92.850 kb on - strand, within IAI46_00405at 92.850 kb on - strand, within IAI46_00405at 92.850 kb on - strand, within IAI46_00405at 92.851 kb on + strand, within IAI46_00405at 92.851 kb on + strand, within IAI46_00405at 92.852 kb on - strand, within IAI46_00405at 92.852 kb on - strand, within IAI46_00405at 92.861 kb on + strand, within IAI46_00405at 92.935 kb on + strand, within IAI46_00405at 92.936 kb on - strand, within IAI46_00405at 92.949 kb on - strand, within IAI46_00405at 92.952 kb on - strand, within IAI46_00405at 92.952 kb on - strand, within IAI46_00405at 92.952 kb on - strand, within IAI46_00405at 92.952 kb on - strand, within IAI46_00405at 93.016 kb on + strand, within IAI46_00405at 93.016 kb on + strand, within IAI46_00405at 93.017 kb on - strand, within IAI46_00405at 93.017 kb on - strand, within IAI46_00405at 93.017 kb on - strand, within IAI46_00405at 93.025 kb on + strand, within IAI46_00405

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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89,330 + IAI46_00395 0.23 +0.5
89,330 + IAI46_00395 0.23 -0.0
89,331 - IAI46_00395 0.23 -0.9
89,331 - IAI46_00395 0.23 -0.7
89,331 - IAI46_00395 0.23 -2.6
89,331 - IAI46_00395 0.23 +0.0
89,331 - IAI46_00395 0.23 +0.4
89,348 - IAI46_00395 0.26 -1.5
89,409 + IAI46_00395 0.34 -1.3
89,409 + IAI46_00395 0.34 +0.8
89,409 + IAI46_00395 0.34 -1.9
89,409 + IAI46_00395 0.34 -1.7
89,410 - IAI46_00395 0.34 -0.2
89,422 + IAI46_00395 0.35 -1.8
89,422 + IAI46_00395 0.35 +2.2
89,423 - IAI46_00395 0.36 -2.9
89,596 + IAI46_00395 0.58 +0.5
89,596 + IAI46_00395 0.58 -2.1
89,601 + IAI46_00395 0.59 +0.0
89,689 + IAI46_00395 0.71 -1.8
89,690 - IAI46_00395 0.71 -0.1
89,710 + IAI46_00395 0.73 +1.0
89,711 - IAI46_00395 0.74 -0.3
89,711 - IAI46_00395 0.74 +1.2
89,714 - IAI46_00395 0.74 -1.0
89,768 - IAI46_00395 0.81 +0.1
89,819 + IAI46_00395 0.88 +0.5
89,819 + IAI46_00395 0.88 +0.2
89,820 - IAI46_00395 0.88 +0.4
89,820 - IAI46_00395 0.88 -1.5
89,820 - IAI46_00395 0.88 +0.8
89,820 - IAI46_00395 0.88 -0.5
89,855 + +0.2
89,856 - +0.4
89,856 - -0.9
89,857 + +0.9
89,858 - +0.0
89,858 - -0.5
89,880 + -0.8
89,897 + +0.2
89,897 + -1.9
89,898 - +1.3
89,898 - +0.4
89,923 - +0.2
89,942 + -1.6
89,943 - -0.7
89,994 + +1.3
89,995 - -0.4
89,995 - -1.1
90,008 + +0.7
90,008 + -0.2
90,008 + -1.7
90,009 - +0.9
90,009 - +1.1
90,009 - +1.1
90,009 - +1.0
90,039 + +0.8
90,039 + +1.3
90,180 + +2.1
90,181 - +0.8
90,181 - +0.1
90,232 + +1.3
90,233 - +1.1
90,233 - -0.1
90,233 - +0.6
90,368 - IAI46_00400 0.10 +1.1
90,368 - IAI46_00400 0.10 +0.2
90,390 + IAI46_00400 0.12 -1.4
90,391 - IAI46_00400 0.12 -1.1
90,391 - IAI46_00400 0.12 -0.7
90,503 + IAI46_00400 0.18 +0.4
90,783 + IAI46_00400 0.33 -1.4
90,783 + IAI46_00400 0.33 -3.5
90,809 + IAI46_00400 0.34 -0.5
90,810 - IAI46_00400 0.34 +0.7
90,810 - IAI46_00400 0.34 -2.2
90,817 - IAI46_00400 0.35 -0.9
90,841 + IAI46_00400 0.36 +0.7
90,914 + IAI46_00400 0.40 +0.1
90,915 - IAI46_00400 0.40 +0.2
90,918 - IAI46_00400 0.40 -0.7
91,011 + IAI46_00400 0.45 +0.1
91,023 + IAI46_00400 0.46 -0.4
91,055 + IAI46_00400 0.47 -0.2
91,056 - IAI46_00400 0.47 -0.4
91,196 + IAI46_00400 0.55 +0.8
91,217 + IAI46_00400 0.56 -0.4
91,296 + IAI46_00400 0.60 -0.0
91,392 + IAI46_00400 0.65 +0.7
91,393 - IAI46_00400 0.65 +1.0
91,393 - IAI46_00400 0.65 -0.1
91,393 - IAI46_00400 0.65 +0.3
91,518 + IAI46_00400 0.72 -1.4
91,518 + IAI46_00400 0.72 -0.2
91,519 - IAI46_00400 0.72 -2.2
91,619 - IAI46_00400 0.78 -0.8
91,619 - IAI46_00400 0.78 +1.5
91,619 - IAI46_00400 0.78 +0.6
91,664 - IAI46_00400 0.80 +0.4
91,743 - IAI46_00400 0.84 -0.6
91,806 - IAI46_00400 0.88 -1.3
91,806 - IAI46_00400 0.88 -0.5
91,807 + IAI46_00400 0.88 -1.6
91,807 + IAI46_00400 0.88 +2.2
91,807 + IAI46_00400 0.88 -1.2
91,808 - IAI46_00400 0.88 -2.1
91,808 - IAI46_00400 0.88 +1.0
91,808 - IAI46_00400 0.88 +0.7
91,808 - IAI46_00400 0.88 +0.5
91,808 - IAI46_00400 0.88 -0.3
91,808 - IAI46_00400 0.88 -1.1
91,808 - IAI46_00400 0.88 -4.0
91,808 - IAI46_00400 0.88 +0.0
91,811 + IAI46_00400 0.88 +0.4
91,811 + IAI46_00400 0.88 +1.0
91,812 - IAI46_00400 0.88 +1.0
91,812 - IAI46_00400 0.88 -0.9
91,812 - IAI46_00400 0.88 -0.6
91,845 + IAI46_00400 0.90 +0.9
91,845 + IAI46_00400 0.90 +1.1
91,845 + IAI46_00400 0.90 -2.4
91,846 - IAI46_00400 0.90 -0.2
91,846 - IAI46_00400 0.90 -1.1
91,846 - IAI46_00400 0.90 +0.1
91,846 - IAI46_00400 0.90 -1.7
91,965 + +0.0
91,965 + +0.9
91,965 + +0.9
91,965 + -0.9
92,026 + -2.1
92,027 - -1.7
92,027 - +1.9
92,029 + +1.2
92,030 - +0.3
92,120 + -0.8
92,120 + +1.7
92,121 - +2.4
92,121 - -0.9
92,142 + +0.5
92,143 - -0.5
92,369 + IAI46_00405 0.23 +1.1
92,370 - IAI46_00405 0.23 -1.5
92,370 - IAI46_00405 0.23 +0.5
92,400 - IAI46_00405 0.25 -0.9
92,432 + IAI46_00405 0.27 +1.1
92,433 - IAI46_00405 0.27 -3.1
92,433 - IAI46_00405 0.27 -1.0
92,445 - IAI46_00405 0.28 +0.6
92,445 - IAI46_00405 0.28 +0.2
92,507 + IAI46_00405 0.32 -1.6
92,507 + IAI46_00405 0.32 -2.5
92,508 - IAI46_00405 0.33 -1.1
92,508 - IAI46_00405 0.33 -1.7
92,531 + IAI46_00405 0.34 +1.1
92,531 + IAI46_00405 0.34 -0.8
92,531 + IAI46_00405 0.34 -1.7
92,532 - IAI46_00405 0.34 +1.8
92,533 + IAI46_00405 0.34 +3.9
92,533 + IAI46_00405 0.34 +0.2
92,533 + IAI46_00405 0.34 +1.1
92,533 + IAI46_00405 0.34 +0.3
92,534 - IAI46_00405 0.34 +1.2
92,534 - IAI46_00405 0.34 -0.6
92,575 + IAI46_00405 0.37 +1.0
92,575 + IAI46_00405 0.37 -0.2
92,576 - IAI46_00405 0.37 +1.2
92,576 - IAI46_00405 0.37 +1.4
92,576 - IAI46_00405 0.37 +2.5
92,725 + IAI46_00405 0.48 -0.6
92,725 + IAI46_00405 0.48 -2.9
92,725 + IAI46_00405 0.48 -0.4
92,726 - IAI46_00405 0.48 -0.3
92,726 - IAI46_00405 0.48 -1.1
92,747 + IAI46_00405 0.50 +0.6
92,849 + IAI46_00405 0.57 +0.9
92,849 + IAI46_00405 0.57 +0.2
92,850 - IAI46_00405 0.57 -0.5
92,850 - IAI46_00405 0.57 +0.0
92,850 - IAI46_00405 0.57 -3.4
92,850 - IAI46_00405 0.57 -0.4
92,850 - IAI46_00405 0.57 +0.5
92,851 + IAI46_00405 0.57 -2.3
92,851 + IAI46_00405 0.57 +0.4
92,852 - IAI46_00405 0.57 -2.7
92,852 - IAI46_00405 0.57 +0.5
92,861 + IAI46_00405 0.58 +0.3
92,935 + IAI46_00405 0.63 -0.6
92,936 - IAI46_00405 0.63 +1.3
92,949 - IAI46_00405 0.64 -1.2
92,952 - IAI46_00405 0.64 +1.5
92,952 - IAI46_00405 0.64 -3.2
92,952 - IAI46_00405 0.64 -1.0
92,952 - IAI46_00405 0.64 +0.7
93,016 + IAI46_00405 0.69 -1.6
93,016 + IAI46_00405 0.69 +0.0
93,017 - IAI46_00405 0.69 -0.0
93,017 - IAI46_00405 0.69 -2.3
93,017 - IAI46_00405 0.69 +0.9
93,025 + IAI46_00405 0.69 +0.8

Or see this region's nucleotide sequence