Strain Fitness in Serratia liquefaciens MT49 around IAI46_00395

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00390 and IAI46_00395 are separated by 114 nucleotidesIAI46_00395 and IAI46_00400 are separated by 262 nucleotides IAI46_00390: IAI46_00390 - LysR family transcriptional regulator, at 88,175 to 89,038 _00390 IAI46_00395: IAI46_00395 - SDR family oxidoreductase, at 89,153 to 89,911 _00395 IAI46_00400: IAI46_00400 - PTS beta-glucoside transporter subunit IIABC, at 90,174 to 92,036 _00400 Position (kb) 89 90Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 88.263 kb on + strand, within IAI46_00390at 88.264 kb on - strand, within IAI46_00390at 88.342 kb on + strand, within IAI46_00390at 88.355 kb on + strand, within IAI46_00390at 88.356 kb on - strand, within IAI46_00390at 88.476 kb on + strand, within IAI46_00390at 88.488 kb on + strand, within IAI46_00390at 88.601 kb on + strand, within IAI46_00390at 88.602 kb on - strand, within IAI46_00390at 88.668 kb on - strand, within IAI46_00390at 88.668 kb on - strand, within IAI46_00390at 88.675 kb on + strand, within IAI46_00390at 88.676 kb on - strand, within IAI46_00390at 88.676 kb on - strand, within IAI46_00390at 88.678 kb on + strand, within IAI46_00390at 88.679 kb on - strand, within IAI46_00390at 89.057 kb on + strandat 89.113 kb on - strandat 89.330 kb on + strand, within IAI46_00395at 89.330 kb on + strand, within IAI46_00395at 89.331 kb on - strand, within IAI46_00395at 89.331 kb on - strand, within IAI46_00395at 89.331 kb on - strand, within IAI46_00395at 89.331 kb on - strand, within IAI46_00395at 89.331 kb on - strand, within IAI46_00395at 89.348 kb on - strand, within IAI46_00395at 89.409 kb on + strand, within IAI46_00395at 89.409 kb on + strand, within IAI46_00395at 89.409 kb on + strand, within IAI46_00395at 89.409 kb on + strand, within IAI46_00395at 89.410 kb on - strand, within IAI46_00395at 89.422 kb on + strand, within IAI46_00395at 89.422 kb on + strand, within IAI46_00395at 89.423 kb on - strand, within IAI46_00395at 89.596 kb on + strand, within IAI46_00395at 89.596 kb on + strand, within IAI46_00395at 89.601 kb on + strand, within IAI46_00395at 89.689 kb on + strand, within IAI46_00395at 89.690 kb on - strand, within IAI46_00395at 89.710 kb on + strand, within IAI46_00395at 89.711 kb on - strand, within IAI46_00395at 89.711 kb on - strand, within IAI46_00395at 89.714 kb on - strand, within IAI46_00395at 89.768 kb on - strand, within IAI46_00395at 89.819 kb on + strand, within IAI46_00395at 89.819 kb on + strand, within IAI46_00395at 89.820 kb on - strand, within IAI46_00395at 89.820 kb on - strand, within IAI46_00395at 89.820 kb on - strand, within IAI46_00395at 89.820 kb on - strand, within IAI46_00395at 89.855 kb on + strandat 89.856 kb on - strandat 89.856 kb on - strandat 89.857 kb on + strandat 89.858 kb on - strandat 89.858 kb on - strandat 89.880 kb on + strandat 89.897 kb on + strandat 89.897 kb on + strandat 89.898 kb on - strandat 89.898 kb on - strandat 89.923 kb on - strandat 89.942 kb on + strandat 89.943 kb on - strandat 89.994 kb on + strandat 89.995 kb on - strandat 89.995 kb on - strandat 90.008 kb on + strandat 90.008 kb on + strandat 90.008 kb on + strandat 90.009 kb on - strandat 90.009 kb on - strandat 90.009 kb on - strandat 90.009 kb on - strandat 90.039 kb on + strandat 90.039 kb on + strandat 90.180 kb on + strandat 90.181 kb on - strandat 90.181 kb on - strandat 90.232 kb on + strandat 90.233 kb on - strandat 90.233 kb on - strandat 90.233 kb on - strandat 90.368 kb on - strand, within IAI46_00400at 90.368 kb on - strand, within IAI46_00400at 90.390 kb on + strand, within IAI46_00400at 90.391 kb on - strand, within IAI46_00400at 90.391 kb on - strand, within IAI46_00400at 90.503 kb on + strand, within IAI46_00400at 90.783 kb on + strand, within IAI46_00400at 90.783 kb on + strand, within IAI46_00400at 90.809 kb on + strand, within IAI46_00400at 90.810 kb on - strand, within IAI46_00400at 90.810 kb on - strand, within IAI46_00400at 90.817 kb on - strand, within IAI46_00400at 90.841 kb on + strand, within IAI46_00400

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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88,263 + IAI46_00390 0.10 -0.5
88,264 - IAI46_00390 0.10 -1.5
88,342 + IAI46_00390 0.19 -0.9
88,355 + IAI46_00390 0.21 +1.3
88,356 - IAI46_00390 0.21 -2.4
88,476 + IAI46_00390 0.35 -2.4
88,488 + IAI46_00390 0.36 -1.6
88,601 + IAI46_00390 0.49 +0.7
88,602 - IAI46_00390 0.49 +0.4
88,668 - IAI46_00390 0.57 +1.6
88,668 - IAI46_00390 0.57 -0.2
88,675 + IAI46_00390 0.58 -1.7
88,676 - IAI46_00390 0.58 -1.7
88,676 - IAI46_00390 0.58 -2.7
88,678 + IAI46_00390 0.58 +0.7
88,679 - IAI46_00390 0.58 +1.0
89,057 + -0.3
89,113 - +1.0
89,330 + IAI46_00395 0.23 +0.5
89,330 + IAI46_00395 0.23 -0.0
89,331 - IAI46_00395 0.23 -0.9
89,331 - IAI46_00395 0.23 -0.7
89,331 - IAI46_00395 0.23 -2.6
89,331 - IAI46_00395 0.23 +0.0
89,331 - IAI46_00395 0.23 +0.4
89,348 - IAI46_00395 0.26 -1.5
89,409 + IAI46_00395 0.34 -1.3
89,409 + IAI46_00395 0.34 +0.8
89,409 + IAI46_00395 0.34 -1.9
89,409 + IAI46_00395 0.34 -1.7
89,410 - IAI46_00395 0.34 -0.2
89,422 + IAI46_00395 0.35 -1.8
89,422 + IAI46_00395 0.35 +2.2
89,423 - IAI46_00395 0.36 -2.9
89,596 + IAI46_00395 0.58 +0.5
89,596 + IAI46_00395 0.58 -2.1
89,601 + IAI46_00395 0.59 +0.0
89,689 + IAI46_00395 0.71 -1.8
89,690 - IAI46_00395 0.71 -0.1
89,710 + IAI46_00395 0.73 +1.0
89,711 - IAI46_00395 0.74 -0.3
89,711 - IAI46_00395 0.74 +1.2
89,714 - IAI46_00395 0.74 -1.0
89,768 - IAI46_00395 0.81 +0.1
89,819 + IAI46_00395 0.88 +0.5
89,819 + IAI46_00395 0.88 +0.2
89,820 - IAI46_00395 0.88 +0.4
89,820 - IAI46_00395 0.88 -1.5
89,820 - IAI46_00395 0.88 +0.8
89,820 - IAI46_00395 0.88 -0.5
89,855 + +0.2
89,856 - +0.4
89,856 - -0.9
89,857 + +0.9
89,858 - +0.0
89,858 - -0.5
89,880 + -0.8
89,897 + +0.2
89,897 + -1.9
89,898 - +1.3
89,898 - +0.4
89,923 - +0.2
89,942 + -1.6
89,943 - -0.7
89,994 + +1.3
89,995 - -0.4
89,995 - -1.1
90,008 + +0.7
90,008 + -0.2
90,008 + -1.7
90,009 - +0.9
90,009 - +1.1
90,009 - +1.1
90,009 - +1.0
90,039 + +0.8
90,039 + +1.3
90,180 + +2.1
90,181 - +0.8
90,181 - +0.1
90,232 + +1.3
90,233 - +1.1
90,233 - -0.1
90,233 - +0.6
90,368 - IAI46_00400 0.10 +1.1
90,368 - IAI46_00400 0.10 +0.2
90,390 + IAI46_00400 0.12 -1.4
90,391 - IAI46_00400 0.12 -1.1
90,391 - IAI46_00400 0.12 -0.7
90,503 + IAI46_00400 0.18 +0.4
90,783 + IAI46_00400 0.33 -1.4
90,783 + IAI46_00400 0.33 -3.5
90,809 + IAI46_00400 0.34 -0.5
90,810 - IAI46_00400 0.34 +0.7
90,810 - IAI46_00400 0.34 -2.2
90,817 - IAI46_00400 0.35 -0.9
90,841 + IAI46_00400 0.36 +0.7

Or see this region's nucleotide sequence