Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3707 and Echvi_3708 are separated by 52 nucleotides Echvi_3708 and Echvi_3709 are separated by 2 nucleotides Echvi_3709 and Echvi_3710 are separated by 3 nucleotides
Echvi_3707: Echvi_3707 - Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase, at 4,414,392 to 4,415,327
_3707
Echvi_3708: Echvi_3708 - anti-anti-sigma factor, at 4,415,380 to 4,415,763
_3708
Echvi_3709: Echvi_3709 - ribonuclease Z, at 4,415,766 to 4,416,677
_3709
Echvi_3710: Echvi_3710 - conserved hypothetical integral membrane protein, at 4,416,681 to 4,417,481
_3710
Position (kb) 4415
4416 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4415.387 kb on - strand at 4415.411 kb on - strand at 4415.414 kb on + strand at 4415.415 kb on - strand at 4415.500 kb on + strand, within Echvi_3708 at 4415.500 kb on + strand, within Echvi_3708 at 4415.536 kb on + strand, within Echvi_3708 at 4415.716 kb on - strand, within Echvi_3708 at 4415.762 kb on - strand at 4415.788 kb on + strand at 4415.788 kb on + strand at 4415.789 kb on - strand at 4415.789 kb on - strand at 4415.936 kb on + strand, within Echvi_3709 at 4415.937 kb on - strand, within Echvi_3709 at 4415.942 kb on + strand, within Echvi_3709 at 4415.953 kb on + strand, within Echvi_3709 at 4415.953 kb on + strand, within Echvi_3709 at 4415.954 kb on - strand, within Echvi_3709 at 4415.967 kb on + strand, within Echvi_3709 at 4416.078 kb on + strand, within Echvi_3709 at 4416.079 kb on - strand, within Echvi_3709 at 4416.086 kb on + strand, within Echvi_3709 at 4416.170 kb on - strand, within Echvi_3709 at 4416.170 kb on - strand, within Echvi_3709 at 4416.171 kb on + strand, within Echvi_3709 at 4416.242 kb on + strand, within Echvi_3709 at 4416.315 kb on + strand, within Echvi_3709 at 4416.315 kb on + strand, within Echvi_3709 at 4416.315 kb on + strand, within Echvi_3709 at 4416.315 kb on + strand, within Echvi_3709 at 4416.317 kb on + strand, within Echvi_3709 at 4416.338 kb on - strand, within Echvi_3709 at 4416.505 kb on - strand, within Echvi_3709 at 4416.576 kb on + strand, within Echvi_3709 at 4416.589 kb on - strand at 4416.666 kb on + strand at 4416.667 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 4,415,387 - -0.0 4,415,411 - -1.0 4,415,414 + +1.1 4,415,415 - -0.0 4,415,500 + Echvi_3708 0.31 +0.2 4,415,500 + Echvi_3708 0.31 +0.9 4,415,536 + Echvi_3708 0.41 -0.1 4,415,716 - Echvi_3708 0.88 +0.7 4,415,762 - +0.4 4,415,788 + +0.3 4,415,788 + +0.7 4,415,789 - +0.8 4,415,789 - +0.4 4,415,936 + Echvi_3709 0.19 -1.4 4,415,937 - Echvi_3709 0.19 +2.5 4,415,942 + Echvi_3709 0.19 +0.2 4,415,953 + Echvi_3709 0.21 -0.8 4,415,953 + Echvi_3709 0.21 +1.0 4,415,954 - Echvi_3709 0.21 -0.3 4,415,967 + Echvi_3709 0.22 -1.2 4,416,078 + Echvi_3709 0.34 -1.5 4,416,079 - Echvi_3709 0.34 -3.0 4,416,086 + Echvi_3709 0.35 -1.4 4,416,170 - Echvi_3709 0.44 -2.3 4,416,170 - Echvi_3709 0.44 -1.2 4,416,171 + Echvi_3709 0.44 -1.7 4,416,242 + Echvi_3709 0.52 -1.0 4,416,315 + Echvi_3709 0.60 -1.6 4,416,315 + Echvi_3709 0.60 +0.5 4,416,315 + Echvi_3709 0.60 -0.2 4,416,315 + Echvi_3709 0.60 +1.2 4,416,317 + Echvi_3709 0.60 +1.0 4,416,338 - Echvi_3709 0.63 -1.3 4,416,505 - Echvi_3709 0.81 +0.6 4,416,576 + Echvi_3709 0.89 -1.6 4,416,589 - -1.2 4,416,666 + -1.6 4,416,667 - +1.0
Or see this region's nucleotide sequence