Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2227 and Echvi_2228 are separated by 307 nucleotides Echvi_2228 and Echvi_2229 are separated by 114 nucleotides
Echvi_2227: Echvi_2227 - Predicted signal-transduction protein containing cAMP-binding and CBS domains, at 2,650,503 to 2,652,392
_2227
Echvi_2228: Echvi_2228 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED, at 2,652,700 to 2,653,362
_2228
Echvi_2229: Echvi_2229 - Lysophospholipase L1 and related esterases, at 2,653,477 to 2,654,226
_2229
Position (kb)
2652
2653
2654 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2651.789 kb on + strand, within Echvi_2227 at 2651.790 kb on - strand, within Echvi_2227 at 2651.790 kb on - strand, within Echvi_2227 at 2651.790 kb on - strand, within Echvi_2227 at 2651.817 kb on - strand, within Echvi_2227 at 2651.817 kb on - strand, within Echvi_2227 at 2651.924 kb on - strand, within Echvi_2227 at 2651.963 kb on - strand, within Echvi_2227 at 2651.963 kb on - strand, within Echvi_2227 at 2651.963 kb on - strand, within Echvi_2227 at 2651.963 kb on - strand, within Echvi_2227 at 2652.143 kb on + strand, within Echvi_2227 at 2652.193 kb on - strand, within Echvi_2227 at 2652.193 kb on - strand, within Echvi_2227 at 2652.226 kb on + strand at 2652.323 kb on + strand at 2652.324 kb on - strand at 2652.388 kb on - strand at 2652.397 kb on - strand at 2652.451 kb on + strand at 2652.465 kb on + strand at 2652.465 kb on + strand at 2652.506 kb on + strand at 2652.528 kb on + strand at 2652.529 kb on - strand at 2652.541 kb on - strand at 2652.545 kb on - strand at 2652.586 kb on - strand at 2652.633 kb on + strand at 2652.634 kb on - strand at 2652.650 kb on + strand at 2652.650 kb on + strand at 2652.685 kb on - strand at 2652.750 kb on - strand at 2652.750 kb on - strand at 2652.757 kb on - strand at 2652.803 kb on + strand, within Echvi_2228 at 2652.804 kb on - strand, within Echvi_2228 at 2652.864 kb on - strand, within Echvi_2228 at 2652.894 kb on + strand, within Echvi_2228 at 2652.895 kb on - strand, within Echvi_2228 at 2652.895 kb on - strand, within Echvi_2228 at 2652.940 kb on + strand, within Echvi_2228 at 2652.941 kb on - strand, within Echvi_2228 at 2652.953 kb on - strand, within Echvi_2228 at 2652.954 kb on + strand, within Echvi_2228 at 2652.954 kb on + strand, within Echvi_2228 at 2652.954 kb on + strand, within Echvi_2228 at 2652.955 kb on - strand, within Echvi_2228 at 2652.955 kb on - strand, within Echvi_2228 at 2653.094 kb on - strand, within Echvi_2228 at 2653.124 kb on + strand, within Echvi_2228 at 2653.124 kb on + strand, within Echvi_2228 at 2653.125 kb on - strand, within Echvi_2228 at 2653.125 kb on - strand, within Echvi_2228 at 2653.125 kb on - strand, within Echvi_2228 at 2653.130 kb on + strand, within Echvi_2228 at 2653.131 kb on - strand, within Echvi_2228 at 2653.131 kb on - strand, within Echvi_2228 at 2653.155 kb on + strand, within Echvi_2228 at 2653.156 kb on - strand, within Echvi_2228 at 2653.197 kb on + strand, within Echvi_2228 at 2653.300 kb on + strand at 2653.301 kb on - strand at 2653.321 kb on - strand at 2653.331 kb on - strand at 2653.345 kb on - strand at 2653.396 kb on - strand at 2653.396 kb on - strand at 2653.485 kb on + strand at 2653.486 kb on - strand at 2653.602 kb on + strand, within Echvi_2229 at 2653.602 kb on + strand, within Echvi_2229 at 2653.602 kb on + strand, within Echvi_2229 at 2653.603 kb on - strand, within Echvi_2229 at 2653.659 kb on - strand, within Echvi_2229 at 2653.659 kb on - strand, within Echvi_2229 at 2653.693 kb on + strand, within Echvi_2229 at 2653.761 kb on + strand, within Echvi_2229 at 2653.762 kb on - strand, within Echvi_2229 at 2653.762 kb on - strand, within Echvi_2229 at 2653.795 kb on + strand, within Echvi_2229 at 2653.840 kb on - strand, within Echvi_2229 at 2653.842 kb on - strand, within Echvi_2229 at 2653.881 kb on - strand, within Echvi_2229 at 2653.881 kb on - strand, within Echvi_2229 at 2653.974 kb on + strand, within Echvi_2229 at 2653.975 kb on - strand, within Echvi_2229 at 2654.015 kb on + strand, within Echvi_2229 at 2654.051 kb on + strand, within Echvi_2229 at 2654.052 kb on - strand, within Echvi_2229 at 2654.072 kb on + strand, within Echvi_2229 at 2654.073 kb on - strand, within Echvi_2229 at 2654.232 kb on + strand at 2654.233 kb on - strand at 2654.233 kb on - strand at 2654.233 kb on - strand at 2654.233 kb on - strand at 2654.236 kb on + strand at 2654.236 kb on + strand at 2654.286 kb on + strand at 2654.331 kb on + strand at 2654.331 kb on + strand at 2654.332 kb on - strand at 2654.352 kb on + strand at 2654.353 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 2,651,789 + Echvi_2227 0.68 -3.1 2,651,790 - Echvi_2227 0.68 +0.2 2,651,790 - Echvi_2227 0.68 -0.6 2,651,790 - Echvi_2227 0.68 -2.0 2,651,817 - Echvi_2227 0.70 -1.0 2,651,817 - Echvi_2227 0.70 -1.0 2,651,924 - Echvi_2227 0.75 -0.4 2,651,963 - Echvi_2227 0.77 +1.0 2,651,963 - Echvi_2227 0.77 +0.7 2,651,963 - Echvi_2227 0.77 -0.7 2,651,963 - Echvi_2227 0.77 -0.2 2,652,143 + Echvi_2227 0.87 +0.8 2,652,193 - Echvi_2227 0.89 +0.8 2,652,193 - Echvi_2227 0.89 +0.2 2,652,226 + +0.4 2,652,323 + +0.9 2,652,324 - -0.3 2,652,388 - +1.2 2,652,397 - -2.9 2,652,451 + -0.7 2,652,465 + +0.2 2,652,465 + +1.1 2,652,506 + +0.1 2,652,528 + +0.7 2,652,529 - +0.2 2,652,541 - +0.8 2,652,545 - +0.2 2,652,586 - +0.5 2,652,633 + +1.5 2,652,634 - -0.4 2,652,650 + -0.2 2,652,650 + +1.0 2,652,685 - +0.7 2,652,750 - +0.5 2,652,750 - +0.5 2,652,757 - -0.4 2,652,803 + Echvi_2228 0.16 -1.3 2,652,804 - Echvi_2228 0.16 -2.9 2,652,864 - Echvi_2228 0.25 -1.3 2,652,894 + Echvi_2228 0.29 -0.2 2,652,895 - Echvi_2228 0.29 -0.2 2,652,895 - Echvi_2228 0.29 +0.2 2,652,940 + Echvi_2228 0.36 +1.2 2,652,941 - Echvi_2228 0.36 -0.1 2,652,953 - Echvi_2228 0.38 +0.6 2,652,954 + Echvi_2228 0.38 -1.0 2,652,954 + Echvi_2228 0.38 -0.2 2,652,954 + Echvi_2228 0.38 +0.4 2,652,955 - Echvi_2228 0.38 -0.3 2,652,955 - Echvi_2228 0.38 +0.0 2,653,094 - Echvi_2228 0.59 -0.3 2,653,124 + Echvi_2228 0.64 -1.9 2,653,124 + Echvi_2228 0.64 -0.8 2,653,125 - Echvi_2228 0.64 -1.0 2,653,125 - Echvi_2228 0.64 +2.1 2,653,125 - Echvi_2228 0.64 -1.0 2,653,130 + Echvi_2228 0.65 -1.1 2,653,131 - Echvi_2228 0.65 +0.4 2,653,131 - Echvi_2228 0.65 +0.3 2,653,155 + Echvi_2228 0.69 -1.1 2,653,156 - Echvi_2228 0.69 -0.9 2,653,197 + Echvi_2228 0.75 +0.5 2,653,300 + +0.0 2,653,301 - +0.8 2,653,321 - -0.3 2,653,331 - -0.1 2,653,345 - -1.0 2,653,396 - -0.8 2,653,396 - -0.0 2,653,485 + +0.4 2,653,486 - -1.4 2,653,602 + Echvi_2229 0.17 +0.7 2,653,602 + Echvi_2229 0.17 -0.1 2,653,602 + Echvi_2229 0.17 -1.0 2,653,603 - Echvi_2229 0.17 -1.0 2,653,659 - Echvi_2229 0.24 -0.8 2,653,659 - Echvi_2229 0.24 +0.4 2,653,693 + Echvi_2229 0.29 +0.7 2,653,761 + Echvi_2229 0.38 +0.9 2,653,762 - Echvi_2229 0.38 +0.9 2,653,762 - Echvi_2229 0.38 +0.1 2,653,795 + Echvi_2229 0.42 +1.5 2,653,840 - Echvi_2229 0.48 -3.2 2,653,842 - Echvi_2229 0.49 -1.7 2,653,881 - Echvi_2229 0.54 -1.2 2,653,881 - Echvi_2229 0.54 -1.9 2,653,974 + Echvi_2229 0.66 +0.6 2,653,975 - Echvi_2229 0.66 +0.8 2,654,015 + Echvi_2229 0.72 -0.3 2,654,051 + Echvi_2229 0.77 -1.0 2,654,052 - Echvi_2229 0.77 -1.8 2,654,072 + Echvi_2229 0.79 -0.3 2,654,073 - Echvi_2229 0.79 -0.4 2,654,232 + +0.2 2,654,233 - -1.8 2,654,233 - -2.1 2,654,233 - -0.7 2,654,233 - +1.5 2,654,236 + -0.8 2,654,236 + +0.6 2,654,286 + -0.9 2,654,331 + -0.3 2,654,331 + +1.0 2,654,332 - +0.2 2,654,352 + -1.8 2,654,353 - +0.3
Or see this region's nucleotide sequence