Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2025

Experiment: marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth
2,385,384	-		Echvi_2024	0.49	-1.3
2,385,393	-		Echvi_2024	0.49	-3.0
2,385,397	-		Echvi_2024	0.50	-0.7
2,385,477	+		Echvi_2024	0.55	-0.2
2,385,478	-		Echvi_2024	0.55	-0.4
2,385,478	-		Echvi_2024	0.55	-0.0
2,385,555	+		Echvi_2024	0.61	+0.7
2,385,610	+		Echvi_2024	0.65	+0.2
2,385,610	+		Echvi_2024	0.65	+1.1
2,385,610	+		Echvi_2024	0.65	-1.2
2,385,610	+		Echvi_2024	0.65	+0.5
2,385,610	+		Echvi_2024	0.65	+1.1
2,385,611	-		Echvi_2024	0.65	+0.4
2,385,616	+		Echvi_2024	0.65	+0.9
2,385,617	-		Echvi_2024	0.65	+0.4
2,385,617	-		Echvi_2024	0.65	-0.1
2,385,617	-		Echvi_2024	0.65	-1.4
2,385,617	-		Echvi_2024	0.65	-1.0
2,385,645	+		Echvi_2024	0.67	+0.3
2,385,645	+		Echvi_2024	0.67	+0.9
2,385,646	-		Echvi_2024	0.67	-2.1
2,385,668	+		Echvi_2024	0.69	-1.5
2,385,669	-		Echvi_2024	0.69	-2.0
2,385,669	-		Echvi_2024	0.69	-2.5
2,385,669	-		Echvi_2024	0.69	-0.1
2,385,669	-		Echvi_2024	0.69	-0.8
2,385,669	-		Echvi_2024	0.69	-2.0
2,385,669	-		Echvi_2024	0.69	-0.8
2,385,670	+		Echvi_2024	0.69	-1.1
2,385,670	+		Echvi_2024	0.69	-2.7
2,385,671	-		Echvi_2024	0.69	-0.3
2,385,671	-		Echvi_2024	0.69	-0.4
2,385,671	-		Echvi_2024	0.69	-2.6
2,385,768	+		Echvi_2024	0.76	-1.0
2,385,769	-		Echvi_2024	0.76	+0.7
2,385,769	-		Echvi_2024	0.76	-1.0
2,385,772	+		Echvi_2024	0.76	+0.7
2,385,808	+		Echvi_2024	0.78	-0.6
2,385,808	+		Echvi_2024	0.78	-0.4
2,385,812	+		Echvi_2024	0.79	+1.1
2,385,813	-		Echvi_2024	0.79	+0.5
2,385,850	-		Echvi_2024	0.81	+0.5
2,385,868	+		Echvi_2024	0.83	-0.8
2,385,869	-		Echvi_2024	0.83	+0.2
2,385,942	-		Echvi_2024	0.88	-0.1
2,385,947	+		Echvi_2024	0.88	+0.7
2,385,947	+		Echvi_2024	0.88	+0.1
2,386,008	-				+2.0
2,386,081	+				-0.2
2,386,130	+				+1.0
2,386,130	+				+1.4
2,386,130	+				-3.0
2,386,180	+				+0.7
2,386,180	+				-1.3
2,386,181	-				+2.3
2,386,233	+				-0.6
2,386,282	+				+0.8
2,386,282	+				+0.3
2,386,282	+				-2.2
2,386,283	-				+0.6
2,386,283	-				-0.1
2,386,307	+				-0.3
2,386,313	+				-0.3
2,386,313	+				+1.6
2,386,313	+				-0.1
2,386,314	-				-0.0
2,386,314	-				-0.1
2,386,405	+		Echvi_2025	0.13	-2.5
2,386,590	-		Echvi_2025	0.25	+0.9
2,386,591	+		Echvi_2025	0.25	+1.5
2,386,592	-		Echvi_2025	0.25	+0.0
2,386,763	+		Echvi_2025	0.36	-0.6
2,386,763	+		Echvi_2025	0.36	-1.2
2,386,764	-		Echvi_2025	0.36	+1.7
2,386,764	-		Echvi_2025	0.36	-0.2
2,386,764	-		Echvi_2025	0.36	-2.0
2,386,778	+		Echvi_2025	0.37	-1.6
2,386,778	+		Echvi_2025	0.37	+0.7
2,386,778	+		Echvi_2025	0.37	+0.6
2,386,783	-		Echvi_2025	0.37	-0.6
2,386,801	+		Echvi_2025	0.38	-1.5
2,386,802	-		Echvi_2025	0.38	-0.8
2,386,814	+		Echvi_2025	0.39	-0.1
2,386,837	-		Echvi_2025	0.41	-0.3
2,386,844	+		Echvi_2025	0.41	-1.6
2,386,845	-		Echvi_2025	0.41	-0.7
2,386,845	-		Echvi_2025	0.41	-0.3
2,386,845	-		Echvi_2025	0.41	-0.0
2,386,862	+		Echvi_2025	0.42	+0.3
2,386,862	+		Echvi_2025	0.42	-1.5
2,386,904	+		Echvi_2025	0.45	+1.0
2,386,905	-		Echvi_2025	0.45	+0.7
2,386,936	-		Echvi_2025	0.47	-0.7
2,386,964	-		Echvi_2025	0.49	-0.6
2,387,051	+		Echvi_2025	0.55	+0.0
2,387,052	-		Echvi_2025	0.55	+1.3
2,387,056	+		Echvi_2025	0.55	-0.1
2,387,056	+		Echvi_2025	0.55	+2.4
2,387,056	+		Echvi_2025	0.55	-0.1
2,387,057	-		Echvi_2025	0.55	-0.2
2,387,061	+		Echvi_2025	0.55	+0.0
2,387,061	+		Echvi_2025	0.55	+0.7
2,387,062	-		Echvi_2025	0.55	-1.5
2,387,150	+		Echvi_2025	0.61	-2.6
2,387,150	+		Echvi_2025	0.61	+0.7
2,387,151	-		Echvi_2025	0.61	+0.0
2,387,192	+		Echvi_2025	0.64	-2.2
2,387,258	+		Echvi_2025	0.68	-0.4
2,387,259	-		Echvi_2025	0.68	+1.2
2,387,261	+		Echvi_2025	0.68	+0.6
2,387,261	+		Echvi_2025	0.68	-2.1
2,387,261	+		Echvi_2025	0.68	-2.1
2,387,361	+		Echvi_2025	0.75	+1.1
2,387,409	+		Echvi_2025	0.78	-1.8
2,387,426	+		Echvi_2025	0.79	-2.5
2,387,427	-		Echvi_2025	0.79	-0.0
2,387,429	+		Echvi_2025	0.79	+0.4
2,387,461	+		Echvi_2025	0.81	+1.7
2,387,465	+		Echvi_2025	0.81	-1.7
2,387,483	+		Echvi_2025	0.82	-1.4
2,387,484	-		Echvi_2025	0.82	-1.9
2,387,495	+		Echvi_2025	0.83	+1.0
2,387,495	+		Echvi_2025	0.83	+0.8
2,387,576	+		Echvi_2025	0.88	-1.5
2,387,577	-		Echvi_2025	0.89	+0.2
2,387,577	-		Echvi_2025	0.89	-1.1
2,387,726	-				+0.2
2,387,775	+				+0.1
2,387,783	+				-0.8
2,387,783	+				-0.5
2,387,908	+		Echvi_2026	0.18	-2.7
2,387,909	-		Echvi_2026	0.18	+0.6
2,387,945	-		Echvi_2026	0.22	+0.3
2,387,945	-		Echvi_2026	0.22	+0.5
2,387,959	+		Echvi_2026	0.24	+0.8
2,388,111	-		Echvi_2026	0.42	-3.0
2,388,134	+		Echvi_2026	0.45	-0.0
2,388,135	-		Echvi_2026	0.45	+2.4
2,388,135	-		Echvi_2026	0.45	-1.3
2,388,135	-		Echvi_2026	0.45	+0.5
2,388,150	+		Echvi_2026	0.47	-0.5
2,388,150	+		Echvi_2026	0.47	+0.3
2,388,150	+		Echvi_2026	0.47	+0.3
2,388,150	+		Echvi_2026	0.47	+0.5
2,388,293	-		Echvi_2026	0.64	+1.9
2,388,293	-		Echvi_2026	0.64	-1.2
2,388,387	+		Echvi_2026	0.76	-1.7
2,388,592	+				-2.3
2,388,593	-				-0.2
2,388,596	+				-0.2
2,388,614	+				-1.5
2,388,642	-				+0.8
2,388,652	-				-1.4
2,388,669	+				-1.4
2,388,670	-				+0.1
2,388,689	+		Echvi_2027	0.11	-0.8
2,388,689	+		Echvi_2027	0.11	-1.3
2,388,690	-		Echvi_2027	0.11	-0.6
2,388,690	-		Echvi_2027	0.11	+0.2
2,388,690	-		Echvi_2027	0.11	-1.6
2,388,716	-		Echvi_2027	0.15	-1.5
2,388,738	-		Echvi_2027	0.17	-0.8
2,388,738	-		Echvi_2027	0.17	+0.2