Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2019

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2018 and Echvi_2019 are separated by 283 nucleotidesEchvi_2019 and Echvi_2020 are separated by 117 nucleotides Echvi_2018: Echvi_2018 - Transposase and inactivated derivatives, at 2,370,033 to 2,371,265 _2018 Echvi_2019: Echvi_2019 - thioredoxin, at 2,371,549 to 2,371,869 _2019 Echvi_2020: Echvi_2020 - DNA-directed DNA polymerase III (polc), at 2,371,987 to 2,376,273 _2020 Position (kb) 2371 2372Strain fitness (log2 ratio) -2 -1 0 1at 2371.538 kb on + strandat 2371.550 kb on + strandat 2371.908 kb on - strandat 2371.932 kb on + strandat 2371.976 kb on + strandat 2371.976 kb on + strandat 2371.977 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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2,371,538 + -1.1
2,371,550 + -1.9
2,371,908 - +0.3
2,371,932 + -1.1
2,371,976 + +0.1
2,371,976 + +1.3
2,371,977 - -0.9

Or see this region's nucleotide sequence