Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0867 and Echvi_0868 are separated by 193 nucleotides Echvi_0868 and Echvi_0869 overlap by 59 nucleotides Echvi_0869 and Echvi_0870 are separated by 103 nucleotides
Echvi_0867: Echvi_0867 - uvrA paralog in Bacteroidetes <small>(from data)</small>, at 988,853 to 991,669
_0867
Echvi_0868: Echvi_0868 - Uncharacterized protein related to plant photosystem II stability/assembly factor, at 991,863 to 992,909
_0868
Echvi_0869: Echvi_0869 - hypothetical protein, at 992,851 to 993,000
_0869
Echvi_0870: Echvi_0870 - Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase, at 993,104 to 993,850
_0870
Position (kb) 991
992
993 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 990.869 kb on + strand, within Echvi_0867 at 990.869 kb on + strand, within Echvi_0867 at 990.870 kb on - strand at 990.871 kb on + strand, within Echvi_0867 at 990.872 kb on - strand, within Echvi_0867 at 990.872 kb on - strand, within Echvi_0867 at 990.872 kb on - strand, within Echvi_0867 at 990.872 kb on - strand, within Echvi_0867 at 990.945 kb on - strand, within Echvi_0867 at 990.956 kb on + strand, within Echvi_0867 at 990.957 kb on - strand, within Echvi_0867 at 990.957 kb on - strand, within Echvi_0867 at 990.957 kb on - strand, within Echvi_0867 at 991.011 kb on - strand, within Echvi_0867 at 991.012 kb on + strand, within Echvi_0867 at 991.012 kb on + strand, within Echvi_0867 at 991.012 kb on + strand, within Echvi_0867 at 991.013 kb on - strand, within Echvi_0867 at 991.013 kb on - strand, within Echvi_0867 at 991.013 kb on - strand, within Echvi_0867 at 991.172 kb on + strand, within Echvi_0867 at 991.172 kb on + strand, within Echvi_0867 at 991.292 kb on + strand, within Echvi_0867 at 991.293 kb on - strand, within Echvi_0867 at 991.294 kb on + strand, within Echvi_0867 at 991.294 kb on + strand, within Echvi_0867 at 991.405 kb on + strand at 991.432 kb on - strand at 991.432 kb on - strand at 991.460 kb on + strand at 991.514 kb on - strand at 991.630 kb on + strand at 991.635 kb on - strand at 991.815 kb on + strand at 991.816 kb on - strand at 991.816 kb on - strand at 991.816 kb on - strand at 991.817 kb on + strand at 991.817 kb on + strand at 991.817 kb on + strand at 991.817 kb on + strand at 991.817 kb on + strand at 991.817 kb on + strand at 991.817 kb on + strand at 991.817 kb on + strand at 991.817 kb on + strand at 991.817 kb on + strand at 991.817 kb on + strand at 991.818 kb on - strand at 991.818 kb on - strand at 991.818 kb on - strand at 991.818 kb on - strand at 991.818 kb on - strand at 991.818 kb on - strand at 991.818 kb on - strand at 991.826 kb on + strand at 991.826 kb on + strand at 991.826 kb on + strand at 991.834 kb on - strand at 991.874 kb on + strand at 991.874 kb on + strand at 991.874 kb on + strand at 991.874 kb on + strand at 991.875 kb on - strand at 991.875 kb on - strand at 991.875 kb on - strand at 991.875 kb on - strand at 991.875 kb on - strand at 991.875 kb on - strand at 991.875 kb on - strand at 991.878 kb on + strand at 991.879 kb on - strand at 991.892 kb on + strand at 991.892 kb on + strand at 991.893 kb on - strand at 991.893 kb on - strand at 991.913 kb on + strand at 992.049 kb on - strand, within Echvi_0868 at 992.154 kb on - strand, within Echvi_0868 at 992.154 kb on - strand, within Echvi_0868 at 992.196 kb on + strand, within Echvi_0868 at 992.197 kb on - strand, within Echvi_0868 at 992.235 kb on + strand, within Echvi_0868 at 992.235 kb on + strand, within Echvi_0868 at 992.236 kb on - strand, within Echvi_0868 at 992.236 kb on - strand, within Echvi_0868 at 992.301 kb on + strand, within Echvi_0868 at 992.322 kb on - strand, within Echvi_0868 at 992.434 kb on + strand, within Echvi_0868 at 992.484 kb on - strand, within Echvi_0868 at 992.484 kb on - strand, within Echvi_0868 at 992.484 kb on - strand, within Echvi_0868 at 992.487 kb on + strand, within Echvi_0868 at 992.487 kb on + strand, within Echvi_0868 at 992.487 kb on + strand, within Echvi_0868 at 992.488 kb on - strand, within Echvi_0868 at 992.488 kb on - strand, within Echvi_0868 at 992.488 kb on - strand, within Echvi_0868 at 992.488 kb on - strand, within Echvi_0868 at 992.488 kb on - strand, within Echvi_0868 at 992.491 kb on - strand, within Echvi_0868 at 992.523 kb on - strand, within Echvi_0868 at 992.537 kb on + strand, within Echvi_0868 at 992.633 kb on + strand, within Echvi_0868 at 992.633 kb on + strand, within Echvi_0868 at 992.634 kb on - strand, within Echvi_0868 at 992.634 kb on - strand, within Echvi_0868 at 992.634 kb on - strand, within Echvi_0868 at 992.634 kb on - strand, within Echvi_0868 at 992.727 kb on + strand, within Echvi_0868 at 992.727 kb on + strand, within Echvi_0868 at 992.905 kb on - strand at 992.905 kb on - strand at 992.908 kb on - strand at 992.939 kb on - strand, within Echvi_0869 at 992.939 kb on - strand, within Echvi_0869 at 992.978 kb on + strand, within Echvi_0869 at 992.978 kb on + strand, within Echvi_0869 at 992.981 kb on + strand, within Echvi_0869 at 992.984 kb on + strand, within Echvi_0869 at 993.004 kb on + strand at 993.004 kb on + strand at 993.005 kb on - strand at 993.009 kb on + strand at 993.046 kb on + strand at 993.058 kb on + strand at 993.058 kb on + strand at 993.058 kb on + strand at 993.059 kb on - strand at 993.059 kb on - strand at 993.060 kb on + strand at 993.060 kb on + strand at 993.060 kb on + strand at 993.060 kb on + strand at 993.061 kb on - strand at 993.061 kb on - strand at 993.061 kb on - strand at 993.067 kb on - strand at 993.081 kb on + strand at 993.124 kb on + strand at 993.124 kb on + strand at 993.124 kb on + strand at 993.125 kb on - strand at 993.125 kb on - strand at 993.125 kb on - strand at 993.125 kb on - strand at 993.125 kb on - strand at 993.127 kb on - strand at 993.133 kb on + strand at 993.133 kb on + strand at 993.172 kb on + strand at 993.298 kb on + strand, within Echvi_0870 at 993.299 kb on - strand, within Echvi_0870 at 993.299 kb on - strand, within Echvi_0870 at 993.299 kb on - strand, within Echvi_0870 at 993.304 kb on - strand, within Echvi_0870 at 993.304 kb on - strand, within Echvi_0870 at 993.304 kb on - strand, within Echvi_0870 at 993.307 kb on + strand, within Echvi_0870 at 993.321 kb on - strand, within Echvi_0870 at 993.322 kb on + strand, within Echvi_0870 at 993.323 kb on - strand, within Echvi_0870 at 993.337 kb on - strand, within Echvi_0870 at 993.484 kb on + strand, within Echvi_0870 at 993.485 kb on - strand, within Echvi_0870 at 993.527 kb on - strand, within Echvi_0870 at 993.560 kb on + strand, within Echvi_0870 at 993.560 kb on + strand, within Echvi_0870 at 993.561 kb on - strand, within Echvi_0870 at 993.561 kb on - strand, within Echvi_0870 at 993.561 kb on - strand, within Echvi_0870 at 993.594 kb on + strand, within Echvi_0870 at 993.594 kb on + strand, within Echvi_0870 at 993.595 kb on - strand, within Echvi_0870 at 993.600 kb on - strand, within Echvi_0870 at 993.604 kb on - strand, within Echvi_0870 at 993.659 kb on + strand, within Echvi_0870 at 993.659 kb on + strand, within Echvi_0870 at 993.768 kb on + strand, within Echvi_0870 at 993.782 kb on + strand at 993.785 kb on + strand at 993.785 kb on + strand at 993.845 kb on - strand at 993.845 kb on - strand at 993.896 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 990,869 + Echvi_0867 0.72 +0.7 990,869 + Echvi_0867 0.72 +1.1 990,870 - +1.4 990,871 + Echvi_0867 0.72 +0.4 990,872 - Echvi_0867 0.72 +0.9 990,872 - Echvi_0867 0.72 +1.0 990,872 - Echvi_0867 0.72 +0.6 990,872 - Echvi_0867 0.72 -0.8 990,945 - Echvi_0867 0.74 -0.9 990,956 + Echvi_0867 0.75 -0.6 990,957 - Echvi_0867 0.75 +1.1 990,957 - Echvi_0867 0.75 -3.3 990,957 - Echvi_0867 0.75 +0.4 991,011 - Echvi_0867 0.77 -0.4 991,012 + Echvi_0867 0.77 +1.0 991,012 + Echvi_0867 0.77 -0.3 991,012 + Echvi_0867 0.77 -1.4 991,013 - Echvi_0867 0.77 -0.2 991,013 - Echvi_0867 0.77 -0.5 991,013 - Echvi_0867 0.77 +0.7 991,172 + Echvi_0867 0.82 -1.1 991,172 + Echvi_0867 0.82 +2.3 991,292 + Echvi_0867 0.87 -0.0 991,293 - Echvi_0867 0.87 -0.5 991,294 + Echvi_0867 0.87 -0.3 991,294 + Echvi_0867 0.87 -1.9 991,405 + +1.1 991,432 - +0.2 991,432 - -1.1 991,460 + -0.0 991,514 - -0.4 991,630 + -0.2 991,635 - +0.4 991,815 + -1.4 991,816 - +1.7 991,816 - -2.3 991,816 - -1.4 991,817 + +1.4 991,817 + -2.0 991,817 + -0.2 991,817 + -1.9 991,817 + +0.8 991,817 + +0.4 991,817 + +0.8 991,817 + +1.9 991,817 + -1.2 991,817 + +1.5 991,817 + -1.0 991,818 - +2.1 991,818 - +1.1 991,818 - -2.1 991,818 - -0.0 991,818 - +0.3 991,818 - -1.6 991,818 - -2.2 991,826 + +0.4 991,826 + +1.0 991,826 + +0.7 991,834 - +1.0 991,874 + -3.1 991,874 + +0.7 991,874 + -0.1 991,874 + -1.5 991,875 - +1.1 991,875 - +1.1 991,875 - -0.0 991,875 - +0.6 991,875 - +0.6 991,875 - -2.6 991,875 - +1.1 991,878 + +0.1 991,879 - -2.5 991,892 + +0.7 991,892 + -1.2 991,893 - +0.1 991,893 - -0.1 991,913 + -0.3 992,049 - Echvi_0868 0.18 +0.7 992,154 - Echvi_0868 0.28 -0.6 992,154 - Echvi_0868 0.28 -0.1 992,196 + Echvi_0868 0.32 -0.2 992,197 - Echvi_0868 0.32 -0.4 992,235 + Echvi_0868 0.36 +0.2 992,235 + Echvi_0868 0.36 -0.4 992,236 - Echvi_0868 0.36 -0.6 992,236 - Echvi_0868 0.36 -0.3 992,301 + Echvi_0868 0.42 +0.2 992,322 - Echvi_0868 0.44 +0.1 992,434 + Echvi_0868 0.55 -0.5 992,484 - Echvi_0868 0.59 -4.2 992,484 - Echvi_0868 0.59 -3.6 992,484 - Echvi_0868 0.59 -1.1 992,487 + Echvi_0868 0.60 -1.9 992,487 + Echvi_0868 0.60 +1.5 992,487 + Echvi_0868 0.60 -0.7 992,488 - Echvi_0868 0.60 +1.6 992,488 - Echvi_0868 0.60 -0.9 992,488 - Echvi_0868 0.60 -0.4 992,488 - Echvi_0868 0.60 -2.3 992,488 - Echvi_0868 0.60 +1.1 992,491 - Echvi_0868 0.60 +1.0 992,523 - Echvi_0868 0.63 -0.3 992,537 + Echvi_0868 0.64 +0.2 992,633 + Echvi_0868 0.74 -0.1 992,633 + Echvi_0868 0.74 +0.5 992,634 - Echvi_0868 0.74 -0.0 992,634 - Echvi_0868 0.74 -2.5 992,634 - Echvi_0868 0.74 -1.6 992,634 - Echvi_0868 0.74 +0.7 992,727 + Echvi_0868 0.83 -1.8 992,727 + Echvi_0868 0.83 -0.9 992,905 - +0.2 992,905 - -0.6 992,908 - +0.6 992,939 - Echvi_0869 0.59 -0.7 992,939 - Echvi_0869 0.59 -2.6 992,978 + Echvi_0869 0.85 -0.1 992,978 + Echvi_0869 0.85 -0.9 992,981 + Echvi_0869 0.87 +0.4 992,984 + Echvi_0869 0.89 +0.9 993,004 + +0.0 993,004 + +1.0 993,005 - +0.1 993,009 + +0.8 993,046 + +1.6 993,058 + -0.3 993,058 + -1.5 993,058 + -0.0 993,059 - -0.3 993,059 - -0.4 993,060 + -1.7 993,060 + -0.2 993,060 + +1.4 993,060 + +1.2 993,061 - +0.4 993,061 - -0.6 993,061 - +2.2 993,067 - +0.6 993,081 + +0.3 993,124 + -0.5 993,124 + -1.2 993,124 + -1.6 993,125 - -1.5 993,125 - +0.3 993,125 - +0.5 993,125 - -0.5 993,125 - +1.1 993,127 - -1.1 993,133 + -2.9 993,133 + -1.1 993,172 + -0.5 993,298 + Echvi_0870 0.26 +0.3 993,299 - Echvi_0870 0.26 -0.5 993,299 - Echvi_0870 0.26 -0.9 993,299 - Echvi_0870 0.26 +1.3 993,304 - Echvi_0870 0.27 +1.9 993,304 - Echvi_0870 0.27 +0.1 993,304 - Echvi_0870 0.27 +1.0 993,307 + Echvi_0870 0.27 +1.0 993,321 - Echvi_0870 0.29 +0.6 993,322 + Echvi_0870 0.29 -1.2 993,323 - Echvi_0870 0.29 -0.1 993,337 - Echvi_0870 0.31 +0.1 993,484 + Echvi_0870 0.51 -0.3 993,485 - Echvi_0870 0.51 -0.0 993,527 - Echvi_0870 0.57 -0.6 993,560 + Echvi_0870 0.61 -1.8 993,560 + Echvi_0870 0.61 +1.4 993,561 - Echvi_0870 0.61 -0.5 993,561 - Echvi_0870 0.61 -2.1 993,561 - Echvi_0870 0.61 +1.0 993,594 + Echvi_0870 0.66 -0.7 993,594 + Echvi_0870 0.66 +0.4 993,595 - Echvi_0870 0.66 +0.9 993,600 - Echvi_0870 0.66 -0.6 993,604 - Echvi_0870 0.67 +0.4 993,659 + Echvi_0870 0.74 -0.2 993,659 + Echvi_0870 0.74 -0.1 993,768 + Echvi_0870 0.89 -2.9 993,782 + -0.9 993,785 + -1.8 993,785 + -2.7 993,845 - -1.1 993,845 - -0.2 993,896 - +0.1
Or see this region's nucleotide sequence