Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0790

Experiment: marine broth

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0789 and Echvi_0790 are separated by 971 nucleotidesEchvi_0790 and Echvi_0791 are separated by 202 nucleotides Echvi_0789: Echvi_0789 - TonB-linked outer membrane protein, SusC/RagA family, at 897,115 to 900,303 _0789 Echvi_0790: Echvi_0790 - hypothetical protein, at 901,275 to 902,162 _0790 Echvi_0791: Echvi_0791 - Zn-dependent dipeptidase, microsomal dipeptidase homolog, at 902,365 to 903,618 _0791 Position (kb) 901 902 903Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 900.578 kb on + strandat 900.927 kb on - strandat 901.037 kb on + strandat 901.079 kb on - strandat 901.118 kb on - strandat 901.216 kb on + strandat 901.305 kb on - strandat 901.323 kb on + strandat 901.326 kb on + strandat 901.329 kb on + strandat 901.348 kb on - strandat 901.351 kb on + strandat 901.351 kb on + strandat 901.356 kb on + strandat 901.357 kb on - strandat 901.357 kb on - strandat 901.358 kb on + strandat 901.359 kb on - strandat 901.359 kb on - strandat 901.389 kb on - strand, within Echvi_0790at 901.410 kb on - strand, within Echvi_0790at 901.419 kb on + strand, within Echvi_0790at 901.445 kb on + strand, within Echvi_0790at 901.445 kb on + strand, within Echvi_0790at 901.475 kb on + strand, within Echvi_0790at 901.478 kb on + strand, within Echvi_0790at 901.478 kb on + strand, within Echvi_0790at 901.478 kb on + strand, within Echvi_0790at 901.478 kb on + strand, within Echvi_0790at 901.479 kb on - strand, within Echvi_0790at 901.479 kb on - strand, within Echvi_0790at 901.479 kb on - strand, within Echvi_0790at 901.479 kb on - strand, within Echvi_0790at 901.479 kb on - strand, within Echvi_0790at 901.479 kb on - strand, within Echvi_0790at 901.479 kb on - strand, within Echvi_0790at 901.479 kb on - strand, within Echvi_0790at 901.512 kb on + strand, within Echvi_0790at 901.513 kb on - strand, within Echvi_0790at 901.513 kb on - strand, within Echvi_0790at 901.538 kb on - strand, within Echvi_0790at 901.573 kb on - strand, within Echvi_0790at 901.648 kb on - strand, within Echvi_0790at 901.650 kb on + strand, within Echvi_0790at 901.684 kb on + strand, within Echvi_0790at 901.685 kb on - strand, within Echvi_0790at 901.692 kb on - strand, within Echvi_0790at 901.701 kb on + strand, within Echvi_0790at 901.702 kb on - strand, within Echvi_0790at 901.702 kb on - strand, within Echvi_0790at 901.717 kb on - strand, within Echvi_0790at 901.734 kb on + strand, within Echvi_0790at 901.741 kb on + strand, within Echvi_0790at 901.741 kb on + strand, within Echvi_0790at 901.741 kb on + strand, within Echvi_0790at 901.741 kb on + strand, within Echvi_0790at 901.742 kb on - strand, within Echvi_0790at 901.782 kb on + strand, within Echvi_0790at 901.783 kb on - strand, within Echvi_0790at 901.783 kb on - strand, within Echvi_0790at 901.804 kb on + strand, within Echvi_0790at 901.804 kb on + strand, within Echvi_0790at 901.804 kb on + strand, within Echvi_0790at 901.805 kb on - strand, within Echvi_0790at 901.892 kb on + strand, within Echvi_0790at 901.892 kb on + strand, within Echvi_0790at 901.892 kb on + strand, within Echvi_0790at 901.901 kb on + strand, within Echvi_0790at 901.901 kb on + strand, within Echvi_0790at 901.901 kb on + strand, within Echvi_0790at 901.901 kb on + strand, within Echvi_0790at 901.902 kb on - strand, within Echvi_0790at 901.902 kb on - strand, within Echvi_0790at 901.952 kb on - strand, within Echvi_0790at 901.958 kb on + strand, within Echvi_0790at 901.958 kb on + strand, within Echvi_0790at 902.020 kb on - strand, within Echvi_0790at 902.020 kb on - strand, within Echvi_0790at 902.064 kb on + strand, within Echvi_0790at 902.064 kb on + strand, within Echvi_0790at 902.065 kb on - strand, within Echvi_0790at 902.065 kb on - strand, within Echvi_0790at 902.133 kb on + strandat 902.133 kb on + strandat 902.139 kb on + strandat 902.143 kb on - strandat 902.198 kb on + strandat 902.236 kb on - strandat 902.263 kb on + strandat 902.264 kb on - strandat 902.264 kb on - strandat 902.327 kb on - strandat 902.339 kb on + strandat 902.365 kb on - strandat 902.449 kb on + strandat 902.450 kb on - strandat 902.511 kb on - strand, within Echvi_0791at 902.552 kb on + strand, within Echvi_0791at 902.552 kb on + strand, within Echvi_0791at 902.580 kb on - strand, within Echvi_0791at 902.658 kb on + strand, within Echvi_0791at 902.659 kb on - strand, within Echvi_0791at 902.659 kb on - strand, within Echvi_0791at 902.668 kb on + strand, within Echvi_0791at 902.668 kb on + strand, within Echvi_0791at 902.669 kb on - strand, within Echvi_0791at 902.780 kb on - strand, within Echvi_0791at 902.874 kb on + strand, within Echvi_0791at 902.879 kb on + strand, within Echvi_0791at 902.880 kb on - strand, within Echvi_0791at 902.880 kb on - strand, within Echvi_0791at 902.880 kb on - strand, within Echvi_0791at 902.880 kb on - strand, within Echvi_0791at 902.884 kb on + strand, within Echvi_0791at 902.884 kb on + strand, within Echvi_0791at 902.885 kb on - strand, within Echvi_0791at 902.908 kb on + strand, within Echvi_0791at 902.908 kb on + strand, within Echvi_0791at 902.908 kb on + strand, within Echvi_0791at 902.911 kb on - strand, within Echvi_0791at 902.988 kb on + strand, within Echvi_0791at 902.989 kb on - strand, within Echvi_0791at 903.071 kb on - strand, within Echvi_0791at 903.087 kb on + strand, within Echvi_0791at 903.088 kb on - strand, within Echvi_0791at 903.131 kb on - strand, within Echvi_0791at 903.131 kb on - strand, within Echvi_0791at 903.132 kb on + strand, within Echvi_0791at 903.133 kb on - strand, within Echvi_0791at 903.133 kb on - strand, within Echvi_0791at 903.154 kb on - strand, within Echvi_0791

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
remove
900,578 + +0.5
900,927 - -0.5
901,037 + +1.0
901,079 - +1.1
901,118 - +0.5
901,216 + +1.1
901,305 - +0.1
901,323 + +0.2
901,326 + -0.7
901,329 + +2.1
901,348 - -0.6
901,351 + -1.2
901,351 + -0.4
901,356 + -2.2
901,357 - -1.0
901,357 - -3.3
901,358 + -0.5
901,359 - +0.5
901,359 - -1.2
901,389 - Echvi_0790 0.13 +1.2
901,410 - Echvi_0790 0.15 +0.3
901,419 + Echvi_0790 0.16 -1.5
901,445 + Echvi_0790 0.19 -0.1
901,445 + Echvi_0790 0.19 -1.7
901,475 + Echvi_0790 0.23 -0.2
901,478 + Echvi_0790 0.23 +0.0
901,478 + Echvi_0790 0.23 -0.5
901,478 + Echvi_0790 0.23 -0.3
901,478 + Echvi_0790 0.23 -0.1
901,479 - Echvi_0790 0.23 -0.4
901,479 - Echvi_0790 0.23 -0.3
901,479 - Echvi_0790 0.23 +0.8
901,479 - Echvi_0790 0.23 -0.3
901,479 - Echvi_0790 0.23 -0.1
901,479 - Echvi_0790 0.23 +1.3
901,479 - Echvi_0790 0.23 -1.4
901,479 - Echvi_0790 0.23 -0.6
901,512 + Echvi_0790 0.27 -0.5
901,513 - Echvi_0790 0.27 -2.1
901,513 - Echvi_0790 0.27 -1.6
901,538 - Echvi_0790 0.30 -0.4
901,573 - Echvi_0790 0.34 +1.1
901,648 - Echvi_0790 0.42 -0.6
901,650 + Echvi_0790 0.42 +1.2
901,684 + Echvi_0790 0.46 +0.4
901,685 - Echvi_0790 0.46 +0.8
901,692 - Echvi_0790 0.47 +0.4
901,701 + Echvi_0790 0.48 -1.9
901,702 - Echvi_0790 0.48 -0.4
901,702 - Echvi_0790 0.48 -1.4
901,717 - Echvi_0790 0.50 +0.1
901,734 + Echvi_0790 0.52 -1.2
901,741 + Echvi_0790 0.52 +1.5
901,741 + Echvi_0790 0.52 -0.2
901,741 + Echvi_0790 0.52 +1.5
901,741 + Echvi_0790 0.52 -0.5
901,742 - Echvi_0790 0.53 +1.0
901,782 + Echvi_0790 0.57 -0.8
901,783 - Echvi_0790 0.57 +2.2
901,783 - Echvi_0790 0.57 -0.4
901,804 + Echvi_0790 0.60 -2.6
901,804 + Echvi_0790 0.60 +1.8
901,804 + Echvi_0790 0.60 +1.6
901,805 - Echvi_0790 0.60 -0.3
901,892 + Echvi_0790 0.69 -0.0
901,892 + Echvi_0790 0.69 -1.2
901,892 + Echvi_0790 0.69 -0.3
901,901 + Echvi_0790 0.70 -0.2
901,901 + Echvi_0790 0.70 -0.9
901,901 + Echvi_0790 0.70 -0.8
901,901 + Echvi_0790 0.70 -3.0
901,902 - Echvi_0790 0.71 -1.5
901,902 - Echvi_0790 0.71 -0.0
901,952 - Echvi_0790 0.76 -1.4
901,958 + Echvi_0790 0.77 +0.3
901,958 + Echvi_0790 0.77 +0.9
902,020 - Echvi_0790 0.84 +1.4
902,020 - Echvi_0790 0.84 +1.1
902,064 + Echvi_0790 0.89 +0.2
902,064 + Echvi_0790 0.89 -1.6
902,065 - Echvi_0790 0.89 +1.3
902,065 - Echvi_0790 0.89 -0.3
902,133 + -2.2
902,133 + -1.5
902,139 + -1.4
902,143 - -0.5
902,198 + -1.9
902,236 - +0.7
902,263 + -0.4
902,264 - +0.8
902,264 - -1.2
902,327 - -0.3
902,339 + -1.3
902,365 - +0.5
902,449 + +1.3
902,450 - +0.2
902,511 - Echvi_0791 0.12 +0.8
902,552 + Echvi_0791 0.15 +1.0
902,552 + Echvi_0791 0.15 -2.1
902,580 - Echvi_0791 0.17 +2.6
902,658 + Echvi_0791 0.23 -1.4
902,659 - Echvi_0791 0.23 -0.7
902,659 - Echvi_0791 0.23 +0.6
902,668 + Echvi_0791 0.24 -3.3
902,668 + Echvi_0791 0.24 +0.3
902,669 - Echvi_0791 0.24 -0.1
902,780 - Echvi_0791 0.33 +0.6
902,874 + Echvi_0791 0.41 -2.2
902,879 + Echvi_0791 0.41 +0.6
902,880 - Echvi_0791 0.41 -0.2
902,880 - Echvi_0791 0.41 +0.0
902,880 - Echvi_0791 0.41 -0.1
902,880 - Echvi_0791 0.41 -3.1
902,884 + Echvi_0791 0.41 +1.0
902,884 + Echvi_0791 0.41 +0.2
902,885 - Echvi_0791 0.41 +0.2
902,908 + Echvi_0791 0.43 +0.5
902,908 + Echvi_0791 0.43 +0.2
902,908 + Echvi_0791 0.43 -0.1
902,911 - Echvi_0791 0.44 +1.9
902,988 + Echvi_0791 0.50 +0.6
902,989 - Echvi_0791 0.50 -1.2
903,071 - Echvi_0791 0.56 -0.9
903,087 + Echvi_0791 0.58 +0.4
903,088 - Echvi_0791 0.58 +2.8
903,131 - Echvi_0791 0.61 +0.4
903,131 - Echvi_0791 0.61 -0.3
903,132 + Echvi_0791 0.61 +1.3
903,133 - Echvi_0791 0.61 -1.2
903,133 - Echvi_0791 0.61 -0.1
903,154 - Echvi_0791 0.63 +0.6

Or see this region's nucleotide sequence