Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0388

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0386 and Echvi_0387 are separated by 16 nucleotidesEchvi_0387 and Echvi_0388 are separated by 577 nucleotidesEchvi_0388 and Echvi_0389 are separated by 115 nucleotidesEchvi_0389 and Echvi_0390 are separated by 185 nucleotides Echvi_0386: Echvi_0386 - hypothetical protein, at 413,442 to 413,768 _0386 Echvi_0387: Echvi_0387 - Helix-turn-helix., at 413,785 to 414,171 _0387 Echvi_0388: Echvi_0388 - hypothetical protein, at 414,749 to 415,171 _0388 Echvi_0389: Echvi_0389 - hypothetical protein, at 415,287 to 415,751 _0389 Echvi_0390: Echvi_0390 - Relaxase/Mobilisation nuclease domain., at 415,937 to 417,112 _0390 Position (kb) 414 415 416Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 413.768 kb on + strandat 413.768 kb on + strandat 413.769 kb on - strandat 413.769 kb on - strandat 413.769 kb on - strandat 413.780 kb on + strandat 413.781 kb on - strandat 413.781 kb on - strandat 413.793 kb on + strandat 413.820 kb on + strandat 413.820 kb on + strandat 413.820 kb on + strandat 413.820 kb on + strandat 413.820 kb on + strandat 413.821 kb on - strandat 413.857 kb on + strand, within Echvi_0387at 413.949 kb on + strand, within Echvi_0387at 413.972 kb on + strand, within Echvi_0387at 414.026 kb on + strand, within Echvi_0387at 414.026 kb on + strand, within Echvi_0387at 414.027 kb on - strand, within Echvi_0387at 414.027 kb on - strand, within Echvi_0387at 414.027 kb on - strand, within Echvi_0387at 414.027 kb on - strand, within Echvi_0387at 414.035 kb on + strand, within Echvi_0387at 414.081 kb on + strand, within Echvi_0387at 414.082 kb on - strand, within Echvi_0387at 414.111 kb on + strand, within Echvi_0387at 414.111 kb on + strand, within Echvi_0387at 414.111 kb on + strand, within Echvi_0387at 414.112 kb on - strand, within Echvi_0387at 414.112 kb on - strand, within Echvi_0387at 414.114 kb on + strand, within Echvi_0387at 414.114 kb on + strand, within Echvi_0387at 414.115 kb on - strand, within Echvi_0387at 414.115 kb on - strand, within Echvi_0387at 414.115 kb on - strand, within Echvi_0387at 414.115 kb on - strand, within Echvi_0387at 414.115 kb on - strand, within Echvi_0387at 414.115 kb on - strand, within Echvi_0387at 414.121 kb on + strand, within Echvi_0387at 414.172 kb on - strandat 414.172 kb on - strandat 414.175 kb on + strandat 414.176 kb on - strandat 414.176 kb on - strandat 414.182 kb on + strandat 414.182 kb on + strandat 414.183 kb on - strandat 414.187 kb on - strandat 414.193 kb on - strandat 414.193 kb on - strandat 414.204 kb on + strandat 414.204 kb on + strandat 414.233 kb on + strandat 414.233 kb on + strandat 414.234 kb on - strandat 414.237 kb on + strandat 414.246 kb on - strandat 414.246 kb on - strandat 414.247 kb on + strandat 414.314 kb on + strandat 414.314 kb on + strandat 414.315 kb on - strandat 414.320 kb on + strandat 414.320 kb on + strandat 414.321 kb on - strandat 414.321 kb on - strandat 414.460 kb on + strandat 414.479 kb on - strandat 414.499 kb on + strandat 414.512 kb on + strandat 414.520 kb on + strandat 414.520 kb on + strandat 414.523 kb on + strandat 414.551 kb on + strandat 414.552 kb on - strandat 414.567 kb on + strandat 414.567 kb on + strandat 414.567 kb on + strandat 414.567 kb on + strandat 414.567 kb on + strandat 414.574 kb on - strandat 414.588 kb on + strandat 414.588 kb on + strandat 414.601 kb on - strandat 414.603 kb on + strandat 414.634 kb on - strandat 414.640 kb on - strandat 414.653 kb on - strandat 414.669 kb on - strandat 414.880 kb on - strand, within Echvi_0388at 414.882 kb on + strand, within Echvi_0388at 414.900 kb on + strand, within Echvi_0388at 414.911 kb on - strand, within Echvi_0388at 414.941 kb on - strand, within Echvi_0388at 414.992 kb on - strand, within Echvi_0388at 414.992 kb on - strand, within Echvi_0388at 414.992 kb on - strand, within Echvi_0388at 414.992 kb on - strand, within Echvi_0388at 415.006 kb on + strand, within Echvi_0388at 415.048 kb on + strand, within Echvi_0388at 415.048 kb on + strand, within Echvi_0388at 415.049 kb on - strand, within Echvi_0388at 415.049 kb on - strand, within Echvi_0388at 415.049 kb on - strand, within Echvi_0388at 415.147 kb on - strandat 415.166 kb on - strandat 415.186 kb on + strandat 415.190 kb on + strandat 415.190 kb on + strandat 415.190 kb on + strandat 415.191 kb on - strandat 415.191 kb on - strandat 415.259 kb on + strandat 415.260 kb on - strandat 415.269 kb on - strandat 415.280 kb on + strandat 415.280 kb on + strandat 415.316 kb on - strandat 415.335 kb on + strand, within Echvi_0389at 415.356 kb on + strand, within Echvi_0389at 415.356 kb on + strand, within Echvi_0389at 415.357 kb on - strand, within Echvi_0389at 415.385 kb on - strand, within Echvi_0389at 415.385 kb on - strand, within Echvi_0389at 415.411 kb on + strand, within Echvi_0389at 415.411 kb on + strand, within Echvi_0389at 415.411 kb on + strand, within Echvi_0389at 415.411 kb on + strand, within Echvi_0389at 415.412 kb on - strand, within Echvi_0389at 415.412 kb on - strand, within Echvi_0389at 415.412 kb on - strand, within Echvi_0389at 415.430 kb on - strand, within Echvi_0389at 415.447 kb on + strand, within Echvi_0389at 415.468 kb on + strand, within Echvi_0389at 415.468 kb on + strand, within Echvi_0389at 415.469 kb on - strand, within Echvi_0389at 415.469 kb on - strand, within Echvi_0389at 415.469 kb on - strand, within Echvi_0389at 415.481 kb on + strand, within Echvi_0389at 415.481 kb on + strand, within Echvi_0389at 415.481 kb on + strand, within Echvi_0389at 415.482 kb on - strand, within Echvi_0389at 415.482 kb on - strand, within Echvi_0389at 415.555 kb on - strand, within Echvi_0389at 415.560 kb on - strand, within Echvi_0389at 415.652 kb on - strand, within Echvi_0389at 415.665 kb on - strand, within Echvi_0389at 415.670 kb on + strand, within Echvi_0389at 415.670 kb on + strand, within Echvi_0389at 415.670 kb on + strand, within Echvi_0389at 415.670 kb on + strand, within Echvi_0389at 415.670 kb on + strand, within Echvi_0389at 415.670 kb on + strand, within Echvi_0389at 415.670 kb on + strand, within Echvi_0389at 415.670 kb on + strand, within Echvi_0389at 415.670 kb on + strand, within Echvi_0389at 415.670 kb on + strand, within Echvi_0389at 415.670 kb on + strand, within Echvi_0389at 415.670 kb on + strand, within Echvi_0389at 415.671 kb on - strand, within Echvi_0389at 415.671 kb on - strand, within Echvi_0389at 415.671 kb on - strand, within Echvi_0389at 415.671 kb on - strand, within Echvi_0389at 415.671 kb on - strand, within Echvi_0389at 415.671 kb on - strand, within Echvi_0389at 415.671 kb on - strand, within Echvi_0389at 415.671 kb on - strand, within Echvi_0389at 415.671 kb on - strand, within Echvi_0389at 415.671 kb on - strand, within Echvi_0389at 415.671 kb on - strand, within Echvi_0389at 415.671 kb on - strand, within Echvi_0389at 415.674 kb on + strand, within Echvi_0389at 415.674 kb on + strand, within Echvi_0389at 415.674 kb on + strand, within Echvi_0389at 415.675 kb on - strand, within Echvi_0389at 415.691 kb on + strand, within Echvi_0389at 415.692 kb on - strand, within Echvi_0389at 415.750 kb on - strandat 415.754 kb on + strandat 415.755 kb on - strandat 415.804 kb on + strandat 415.804 kb on + strandat 415.805 kb on - strandat 415.815 kb on + strandat 415.815 kb on + strandat 415.815 kb on + strandat 415.817 kb on + strandat 415.817 kb on + strandat 415.818 kb on - strandat 415.818 kb on - strandat 415.825 kb on + strandat 415.826 kb on - strandat 415.826 kb on - strandat 415.826 kb on - strandat 415.837 kb on + strandat 415.896 kb on - strandat 415.905 kb on - strandat 415.905 kb on - strandat 415.913 kb on - strandat 415.948 kb on + strandat 415.948 kb on + strandat 415.949 kb on - strandat 415.991 kb on + strandat 416.035 kb on + strandat 416.045 kb on - strandat 416.065 kb on + strand, within Echvi_0390at 416.065 kb on + strand, within Echvi_0390at 416.071 kb on - strand, within Echvi_0390at 416.109 kb on - strand, within Echvi_0390at 416.165 kb on + strand, within Echvi_0390

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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413,768 + -0.4
413,768 + -0.5
413,769 - +0.0
413,769 - -0.6
413,769 - +1.7
413,780 + -1.6
413,781 - -0.9
413,781 - +0.2
413,793 + +1.1
413,820 + -2.7
413,820 + -1.2
413,820 + +1.0
413,820 + +1.3
413,820 + -0.9
413,821 - +0.7
413,857 + Echvi_0387 0.19 +1.5
413,949 + Echvi_0387 0.42 -1.0
413,972 + Echvi_0387 0.48 -1.2
414,026 + Echvi_0387 0.62 +1.3
414,026 + Echvi_0387 0.62 +1.3
414,027 - Echvi_0387 0.63 +1.0
414,027 - Echvi_0387 0.63 +0.8
414,027 - Echvi_0387 0.63 +1.1
414,027 - Echvi_0387 0.63 -1.1
414,035 + Echvi_0387 0.65 -2.1
414,081 + Echvi_0387 0.76 -0.2
414,082 - Echvi_0387 0.77 -0.8
414,111 + Echvi_0387 0.84 -0.9
414,111 + Echvi_0387 0.84 -1.0
414,111 + Echvi_0387 0.84 +0.2
414,112 - Echvi_0387 0.84 -1.9
414,112 - Echvi_0387 0.84 +0.6
414,114 + Echvi_0387 0.85 -0.2
414,114 + Echvi_0387 0.85 -0.3
414,115 - Echvi_0387 0.85 +0.4
414,115 - Echvi_0387 0.85 +0.3
414,115 - Echvi_0387 0.85 +0.3
414,115 - Echvi_0387 0.85 +1.2
414,115 - Echvi_0387 0.85 -1.6
414,115 - Echvi_0387 0.85 -0.3
414,121 + Echvi_0387 0.87 +0.9
414,172 - -0.3
414,172 - +1.3
414,175 + -2.6
414,176 - -2.4
414,176 - -0.5
414,182 + -0.2
414,182 + -0.6
414,183 - -0.1
414,187 - +0.8
414,193 - -1.1
414,193 - -1.4
414,204 + -0.7
414,204 + -0.9
414,233 + +0.2
414,233 + -0.6
414,234 - +0.9
414,237 + +0.1
414,246 - -0.9
414,246 - +1.0
414,247 + -0.9
414,314 + -0.5
414,314 + +0.2
414,315 - -1.8
414,320 + -1.4
414,320 + -2.9
414,321 - -0.0
414,321 - +0.6
414,460 + -1.2
414,479 - +0.6
414,499 + -0.9
414,512 + -1.2
414,520 + -1.4
414,520 + +0.8
414,523 + -2.0
414,551 + +0.7
414,552 - +0.7
414,567 + +1.3
414,567 + +0.5
414,567 + +1.1
414,567 + +0.8
414,567 + +1.2
414,574 - -0.3
414,588 + +0.8
414,588 + +0.9
414,601 - +1.0
414,603 + +0.4
414,634 - +0.9
414,640 - -0.1
414,653 - +0.9
414,669 - -1.0
414,880 - Echvi_0388 0.31 +1.7
414,882 + Echvi_0388 0.31 -1.2
414,900 + Echvi_0388 0.36 -3.0
414,911 - Echvi_0388 0.38 -1.6
414,941 - Echvi_0388 0.45 -1.7
414,992 - Echvi_0388 0.57 -3.0
414,992 - Echvi_0388 0.57 -2.9
414,992 - Echvi_0388 0.57 -1.0
414,992 - Echvi_0388 0.57 +0.4
415,006 + Echvi_0388 0.61 -2.0
415,048 + Echvi_0388 0.71 -0.1
415,048 + Echvi_0388 0.71 -1.6
415,049 - Echvi_0388 0.71 -1.3
415,049 - Echvi_0388 0.71 -0.2
415,049 - Echvi_0388 0.71 +0.0
415,147 - -0.9
415,166 - -1.7
415,186 + -1.0
415,190 + -1.0
415,190 + -0.4
415,190 + +0.5
415,191 - +0.9
415,191 - -0.9
415,259 + -0.1
415,260 - -0.3
415,269 - -0.3
415,280 + -0.1
415,280 + +2.9
415,316 - -0.4
415,335 + Echvi_0389 0.10 +0.0
415,356 + Echvi_0389 0.15 -1.0
415,356 + Echvi_0389 0.15 +1.2
415,357 - Echvi_0389 0.15 -0.6
415,385 - Echvi_0389 0.21 +0.2
415,385 - Echvi_0389 0.21 -0.1
415,411 + Echvi_0389 0.27 +0.7
415,411 + Echvi_0389 0.27 -1.9
415,411 + Echvi_0389 0.27 -0.7
415,411 + Echvi_0389 0.27 +0.9
415,412 - Echvi_0389 0.27 -0.1
415,412 - Echvi_0389 0.27 -2.4
415,412 - Echvi_0389 0.27 -0.9
415,430 - Echvi_0389 0.31 -0.7
415,447 + Echvi_0389 0.34 +0.2
415,468 + Echvi_0389 0.39 +1.2
415,468 + Echvi_0389 0.39 -0.4
415,469 - Echvi_0389 0.39 +0.6
415,469 - Echvi_0389 0.39 -0.5
415,469 - Echvi_0389 0.39 -1.9
415,481 + Echvi_0389 0.42 -3.2
415,481 + Echvi_0389 0.42 -0.6
415,481 + Echvi_0389 0.42 -2.5
415,482 - Echvi_0389 0.42 -0.3
415,482 - Echvi_0389 0.42 +1.5
415,555 - Echvi_0389 0.58 +0.6
415,560 - Echvi_0389 0.59 -0.3
415,652 - Echvi_0389 0.78 -1.8
415,665 - Echvi_0389 0.81 -2.8
415,670 + Echvi_0389 0.82 -0.6
415,670 + Echvi_0389 0.82 +2.8
415,670 + Echvi_0389 0.82 -1.5
415,670 + Echvi_0389 0.82 +1.8
415,670 + Echvi_0389 0.82 +0.4
415,670 + Echvi_0389 0.82 +0.5
415,670 + Echvi_0389 0.82 +0.2
415,670 + Echvi_0389 0.82 +0.1
415,670 + Echvi_0389 0.82 +0.2
415,670 + Echvi_0389 0.82 +0.4
415,670 + Echvi_0389 0.82 +1.3
415,670 + Echvi_0389 0.82 -2.0
415,671 - Echvi_0389 0.83 -1.2
415,671 - Echvi_0389 0.83 -1.6
415,671 - Echvi_0389 0.83 +0.6
415,671 - Echvi_0389 0.83 +1.4
415,671 - Echvi_0389 0.83 -0.3
415,671 - Echvi_0389 0.83 +0.7
415,671 - Echvi_0389 0.83 +0.1
415,671 - Echvi_0389 0.83 -1.9
415,671 - Echvi_0389 0.83 +0.8
415,671 - Echvi_0389 0.83 +0.0
415,671 - Echvi_0389 0.83 +1.6
415,671 - Echvi_0389 0.83 +0.6
415,674 + Echvi_0389 0.83 -0.5
415,674 + Echvi_0389 0.83 +1.6
415,674 + Echvi_0389 0.83 -0.3
415,675 - Echvi_0389 0.83 -0.9
415,691 + Echvi_0389 0.87 -0.0
415,692 - Echvi_0389 0.87 +1.4
415,750 - +3.6
415,754 + +0.8
415,755 - -1.1
415,804 + -0.4
415,804 + +0.2
415,805 - -1.6
415,815 + +0.8
415,815 + +0.1
415,815 + -0.2
415,817 + +0.9
415,817 + -0.9
415,818 - -3.0
415,818 - +0.7
415,825 + +0.3
415,826 - +0.4
415,826 - +0.5
415,826 - +1.0
415,837 + -0.0
415,896 - -1.1
415,905 - +1.4
415,905 - -1.1
415,913 - -1.0
415,948 + +0.1
415,948 + -0.6
415,949 - -0.4
415,991 + -0.8
416,035 + +2.5
416,045 - +0.2
416,065 + Echvi_0390 0.11 +0.3
416,065 + Echvi_0390 0.11 +0.9
416,071 - Echvi_0390 0.11 -0.2
416,109 - Echvi_0390 0.15 -1.3
416,165 + Echvi_0390 0.19 +1.0

Or see this region's nucleotide sequence