Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0338 and Echvi_0339 overlap by 1 nucleotides Echvi_0339 and Echvi_0340 are separated by 192 nucleotides Echvi_0340 and Echvi_0341 are separated by 7 nucleotides Echvi_0341 and Echvi_0342 overlap by 4 nucleotides
Echvi_0338: Echvi_0338 - Sua5/YciO/YrdC/YwlC family protein, at 360,209 to 361,171
_0338
Echvi_0339: Echvi_0339 - Tetratricopeptide repeat., at 361,171 to 361,866
_0339
Echvi_0340: Echvi_0340 - ADP-ribose pyrophosphatase, at 362,059 to 362,610
_0340
Echvi_0341: Echvi_0341 - hypothetical protein, at 362,618 to 363,199
_0341
Echvi_0342: Echvi_0342 - ATP-dependent DNA helicase, RecQ family, at 363,196 to 365,118
_0342
Position (kb) 362
363 Strain fitness (log2 ratio) -2
-1
0
1
2 at 361.249 kb on - strand, within Echvi_0339 at 361.518 kb on - strand, within Echvi_0339 at 361.522 kb on - strand, within Echvi_0339 at 361.522 kb on - strand, within Echvi_0339 at 361.558 kb on - strand, within Echvi_0339 at 361.560 kb on - strand, within Echvi_0339 at 361.560 kb on - strand, within Echvi_0339 at 361.560 kb on - strand, within Echvi_0339 at 361.599 kb on - strand, within Echvi_0339 at 361.599 kb on - strand, within Echvi_0339 at 361.629 kb on - strand, within Echvi_0339 at 361.636 kb on - strand, within Echvi_0339 at 361.660 kb on - strand, within Echvi_0339 at 361.732 kb on - strand, within Echvi_0339 at 361.767 kb on - strand, within Echvi_0339 at 361.771 kb on - strand, within Echvi_0339 at 361.783 kb on - strand, within Echvi_0339 at 361.944 kb on + strand at 361.944 kb on + strand at 361.944 kb on + strand at 361.944 kb on + strand at 361.945 kb on - strand at 361.945 kb on - strand at 362.051 kb on - strand at 362.052 kb on - strand at 362.144 kb on + strand, within Echvi_0340 at 362.150 kb on - strand, within Echvi_0340 at 362.221 kb on + strand, within Echvi_0340 at 362.221 kb on + strand, within Echvi_0340 at 362.222 kb on - strand, within Echvi_0340 at 362.222 kb on - strand, within Echvi_0340 at 362.307 kb on + strand, within Echvi_0340 at 362.396 kb on - strand, within Echvi_0340 at 362.605 kb on - strand at 362.611 kb on - strand at 362.620 kb on - strand at 362.634 kb on - strand at 362.642 kb on + strand at 362.642 kb on + strand at 362.643 kb on - strand at 362.643 kb on - strand at 362.644 kb on + strand at 362.645 kb on - strand at 362.673 kb on + strand at 362.673 kb on + strand at 362.674 kb on - strand at 362.674 kb on - strand at 362.674 kb on - strand at 362.804 kb on + strand, within Echvi_0341 at 362.882 kb on + strand, within Echvi_0341 at 362.883 kb on - strand, within Echvi_0341 at 363.036 kb on + strand, within Echvi_0341 at 363.037 kb on - strand, within Echvi_0341 at 363.037 kb on - strand, within Echvi_0341 at 363.045 kb on + strand, within Echvi_0341 at 363.123 kb on - strand, within Echvi_0341 at 363.136 kb on + strand, within Echvi_0341 at 363.136 kb on + strand, within Echvi_0341 at 363.137 kb on - strand, within Echvi_0341 at 363.282 kb on - strand at 363.330 kb on + strand at 363.434 kb on - strand, within Echvi_0342 at 363.502 kb on - strand, within Echvi_0342
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 361,249 - Echvi_0339 0.11 -0.1 361,518 - Echvi_0339 0.50 +2.4 361,522 - Echvi_0339 0.50 +0.6 361,522 - Echvi_0339 0.50 +0.8 361,558 - Echvi_0339 0.56 -0.5 361,560 - Echvi_0339 0.56 -0.0 361,560 - Echvi_0339 0.56 +1.4 361,560 - Echvi_0339 0.56 +1.1 361,599 - Echvi_0339 0.61 +0.1 361,599 - Echvi_0339 0.61 -0.7 361,629 - Echvi_0339 0.66 -2.6 361,636 - Echvi_0339 0.67 +1.8 361,660 - Echvi_0339 0.70 -2.5 361,732 - Echvi_0339 0.81 +0.3 361,767 - Echvi_0339 0.86 -1.7 361,771 - Echvi_0339 0.86 -0.0 361,783 - Echvi_0339 0.88 -0.1 361,944 + -0.5 361,944 + +2.0 361,944 + -1.4 361,944 + -0.3 361,945 - +0.3 361,945 - +0.4 362,051 - +0.9 362,052 - -1.4 362,144 + Echvi_0340 0.15 -1.6 362,150 - Echvi_0340 0.16 -1.1 362,221 + Echvi_0340 0.29 -0.7 362,221 + Echvi_0340 0.29 +0.2 362,222 - Echvi_0340 0.30 -0.6 362,222 - Echvi_0340 0.30 -1.2 362,307 + Echvi_0340 0.45 -1.8 362,396 - Echvi_0340 0.61 +0.6 362,605 - -1.2 362,611 - -0.2 362,620 - +0.8 362,634 - -2.6 362,642 + -2.1 362,642 + -0.9 362,643 - -0.2 362,643 - +0.2 362,644 + -1.2 362,645 - -0.1 362,673 + -1.2 362,673 + -0.7 362,674 - -0.7 362,674 - +0.9 362,674 - +0.2 362,804 + Echvi_0341 0.32 -2.0 362,882 + Echvi_0341 0.45 -0.5 362,883 - Echvi_0341 0.46 +0.2 363,036 + Echvi_0341 0.72 -0.7 363,037 - Echvi_0341 0.72 +0.8 363,037 - Echvi_0341 0.72 -0.2 363,045 + Echvi_0341 0.73 -0.3 363,123 - Echvi_0341 0.87 +0.2 363,136 + Echvi_0341 0.89 +0.7 363,136 + Echvi_0341 0.89 +0.6 363,137 - Echvi_0341 0.89 -1.2 363,282 - +0.5 363,330 + -0.4 363,434 - Echvi_0342 0.12 -1.9 363,502 - Echvi_0342 0.16 +1.7
Or see this region's nucleotide sequence