Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16450

Experiment: m.b. Cobalt chloride 0.05 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_16445 and CA264_16450 are separated by 108 nucleotidesCA264_16450 and CA264_16455 are separated by 71 nucleotidesCA264_16455 and CA264_16460 are separated by 36 nucleotides CA264_16445: CA264_16445 - hypothetical protein, at 3,825,264 to 3,825,827 _16445 CA264_16450: CA264_16450 - hypothetical protein, at 3,825,936 to 3,826,268 _16450 CA264_16455: CA264_16455 - N-acetyltransferase, at 3,826,340 to 3,826,810 _16455 CA264_16460: CA264_16460 - acyl-ACP thioesterase, at 3,826,847 to 3,827,611 _16460 Position (kb) 3825 3826 3827Strain fitness (log2 ratio) -2 -1 0 1at 3824.955 kb on - strandat 3824.970 kb on - strandat 3825.026 kb on + strandat 3825.026 kb on + strandat 3825.028 kb on + strandat 3825.028 kb on + strandat 3825.028 kb on + strandat 3825.029 kb on - strandat 3825.032 kb on + strandat 3825.032 kb on + strandat 3825.033 kb on - strandat 3825.033 kb on - strandat 3825.152 kb on - strandat 3825.249 kb on + strandat 3825.263 kb on + strandat 3825.411 kb on - strand, within CA264_16445at 3825.411 kb on - strand, within CA264_16445at 3825.411 kb on - strand, within CA264_16445at 3825.429 kb on - strand, within CA264_16445at 3825.636 kb on + strand, within CA264_16445at 3825.637 kb on - strand, within CA264_16445at 3825.673 kb on + strand, within CA264_16445at 3825.722 kb on - strand, within CA264_16445at 3825.940 kb on + strandat 3825.941 kb on - strandat 3825.941 kb on - strandat 3825.941 kb on - strandat 3825.945 kb on + strandat 3825.952 kb on + strandat 3825.952 kb on + strandat 3825.958 kb on + strandat 3825.958 kb on + strandat 3825.959 kb on - strandat 3825.963 kb on - strandat 3825.963 kb on - strandat 3825.965 kb on - strandat 3825.965 kb on - strandat 3825.965 kb on - strandat 3825.969 kb on - strandat 3825.969 kb on - strandat 3825.971 kb on + strand, within CA264_16450at 3825.972 kb on - strand, within CA264_16450at 3826.009 kb on + strand, within CA264_16450at 3826.009 kb on + strand, within CA264_16450at 3826.010 kb on - strand, within CA264_16450at 3826.015 kb on + strand, within CA264_16450at 3826.031 kb on + strand, within CA264_16450at 3826.066 kb on + strand, within CA264_16450at 3826.098 kb on + strand, within CA264_16450at 3826.099 kb on - strand, within CA264_16450at 3826.099 kb on - strand, within CA264_16450at 3826.234 kb on + strand, within CA264_16450at 3826.254 kb on - strandat 3826.254 kb on - strandat 3826.254 kb on - strandat 3826.387 kb on - strand, within CA264_16455at 3826.387 kb on - strand, within CA264_16455at 3826.422 kb on + strand, within CA264_16455at 3826.422 kb on + strand, within CA264_16455at 3826.423 kb on - strand, within CA264_16455at 3826.423 kb on - strand, within CA264_16455at 3826.515 kb on - strand, within CA264_16455at 3826.522 kb on + strand, within CA264_16455at 3826.569 kb on - strand, within CA264_16455at 3826.569 kb on - strand, within CA264_16455at 3826.572 kb on + strand, within CA264_16455at 3826.574 kb on + strand, within CA264_16455at 3826.574 kb on + strand, within CA264_16455at 3826.600 kb on - strand, within CA264_16455at 3826.607 kb on - strand, within CA264_16455at 3826.607 kb on - strand, within CA264_16455at 3826.608 kb on + strand, within CA264_16455at 3826.608 kb on + strand, within CA264_16455at 3826.608 kb on + strand, within CA264_16455at 3826.608 kb on + strand, within CA264_16455at 3826.609 kb on - strand, within CA264_16455at 3826.611 kb on + strand, within CA264_16455at 3826.612 kb on - strand, within CA264_16455at 3826.626 kb on - strand, within CA264_16455at 3826.630 kb on + strand, within CA264_16455at 3826.800 kb on - strandat 3826.823 kb on - strandat 3826.829 kb on + strandat 3826.839 kb on + strandat 3826.839 kb on + strandat 3826.839 kb on + strandat 3826.840 kb on - strandat 3826.840 kb on - strandat 3826.842 kb on - strandat 3826.955 kb on - strand, within CA264_16460at 3826.981 kb on + strand, within CA264_16460at 3827.006 kb on - strand, within CA264_16460at 3827.114 kb on + strand, within CA264_16460at 3827.114 kb on + strand, within CA264_16460at 3827.115 kb on - strand, within CA264_16460

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.05 mM
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3,824,955 - -0.9
3,824,970 - -0.3
3,825,026 + +0.8
3,825,026 + -0.1
3,825,028 + -0.0
3,825,028 + -0.7
3,825,028 + -0.3
3,825,029 - +0.3
3,825,032 + -0.6
3,825,032 + -0.1
3,825,033 - +0.5
3,825,033 - -0.2
3,825,152 - +0.1
3,825,249 + -0.6
3,825,263 + -0.6
3,825,411 - CA264_16445 0.26 -0.5
3,825,411 - CA264_16445 0.26 -0.2
3,825,411 - CA264_16445 0.26 +0.1
3,825,429 - CA264_16445 0.29 +0.6
3,825,636 + CA264_16445 0.66 +0.4
3,825,637 - CA264_16445 0.66 +0.9
3,825,673 + CA264_16445 0.73 +0.0
3,825,722 - CA264_16445 0.81 -0.2
3,825,940 + +0.1
3,825,941 - -0.9
3,825,941 - +1.3
3,825,941 - +0.4
3,825,945 + +0.5
3,825,952 + -1.7
3,825,952 + -1.4
3,825,958 + -0.1
3,825,958 + +0.0
3,825,959 - +0.1
3,825,963 - +0.3
3,825,963 - -0.9
3,825,965 - -0.6
3,825,965 - -0.4
3,825,965 - +0.5
3,825,969 - +0.4
3,825,969 - -1.5
3,825,971 + CA264_16450 0.11 -0.4
3,825,972 - CA264_16450 0.11 +0.0
3,826,009 + CA264_16450 0.22 -0.7
3,826,009 + CA264_16450 0.22 -0.4
3,826,010 - CA264_16450 0.22 -0.1
3,826,015 + CA264_16450 0.24 -0.5
3,826,031 + CA264_16450 0.29 -0.6
3,826,066 + CA264_16450 0.39 -0.2
3,826,098 + CA264_16450 0.49 -0.5
3,826,099 - CA264_16450 0.49 +0.9
3,826,099 - CA264_16450 0.49 -2.3
3,826,234 + CA264_16450 0.89 -0.3
3,826,254 - -0.5
3,826,254 - -0.4
3,826,254 - +0.1
3,826,387 - CA264_16455 0.10 -0.7
3,826,387 - CA264_16455 0.10 -0.1
3,826,422 + CA264_16455 0.17 +0.5
3,826,422 + CA264_16455 0.17 +1.6
3,826,423 - CA264_16455 0.18 -0.1
3,826,423 - CA264_16455 0.18 +0.4
3,826,515 - CA264_16455 0.37 -0.7
3,826,522 + CA264_16455 0.39 +0.9
3,826,569 - CA264_16455 0.49 -0.9
3,826,569 - CA264_16455 0.49 -0.8
3,826,572 + CA264_16455 0.49 +0.2
3,826,574 + CA264_16455 0.50 +0.4
3,826,574 + CA264_16455 0.50 -0.3
3,826,600 - CA264_16455 0.55 +1.7
3,826,607 - CA264_16455 0.57 +0.3
3,826,607 - CA264_16455 0.57 -0.1
3,826,608 + CA264_16455 0.57 +0.4
3,826,608 + CA264_16455 0.57 -1.5
3,826,608 + CA264_16455 0.57 -0.2
3,826,608 + CA264_16455 0.57 -0.4
3,826,609 - CA264_16455 0.57 -0.1
3,826,611 + CA264_16455 0.58 +0.1
3,826,612 - CA264_16455 0.58 -0.0
3,826,626 - CA264_16455 0.61 +1.0
3,826,630 + CA264_16455 0.62 +0.6
3,826,800 - -0.8
3,826,823 - -0.2
3,826,829 + -0.1
3,826,839 + -1.0
3,826,839 + -0.4
3,826,839 + +0.4
3,826,840 - -0.1
3,826,840 - +0.4
3,826,842 - +0.8
3,826,955 - CA264_16460 0.14 -0.0
3,826,981 + CA264_16460 0.18 +1.2
3,827,006 - CA264_16460 0.21 -0.3
3,827,114 + CA264_16460 0.35 -0.8
3,827,114 + CA264_16460 0.35 +0.1
3,827,115 - CA264_16460 0.35 -1.0

Or see this region's nucleotide sequence