Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16220

Experiment: m.b. Cobalt chloride 0.05 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_16210 and CA264_16215 are separated by 34 nucleotidesCA264_16215 and CA264_16220 are separated by 131 nucleotidesCA264_16220 and CA264_16225 are separated by 94 nucleotides CA264_16210: CA264_16210 - thioredoxin family protein, at 3,771,351 to 3,771,983 _16210 CA264_16215: CA264_16215 - redoxin, at 3,772,018 to 3,772,515 _16215 CA264_16220: CA264_16220 - sulfite reductase, at 3,772,647 to 3,773,930 _16220 CA264_16225: CA264_16225 - TonB-dependent siderophore receptor, at 3,774,025 to 3,776,454 _16225 Position (kb) 3772 3773 3774Strain fitness (log2 ratio) -1 0 1 2at 3771.650 kb on + strand, within CA264_16210at 3771.725 kb on - strand, within CA264_16210at 3771.725 kb on - strand, within CA264_16210at 3771.729 kb on - strand, within CA264_16210at 3771.788 kb on + strand, within CA264_16210at 3771.789 kb on - strand, within CA264_16210at 3771.789 kb on - strand, within CA264_16210at 3771.820 kb on + strand, within CA264_16210at 3771.820 kb on + strand, within CA264_16210at 3771.820 kb on + strand, within CA264_16210at 3771.821 kb on - strand, within CA264_16210at 3771.864 kb on - strand, within CA264_16210at 3771.864 kb on - strand, within CA264_16210at 3771.983 kb on + strandat 3771.987 kb on + strandat 3771.987 kb on + strandat 3771.988 kb on - strandat 3771.988 kb on - strandat 3771.990 kb on - strandat 3772.007 kb on + strandat 3772.082 kb on + strand, within CA264_16215at 3772.101 kb on + strand, within CA264_16215at 3772.102 kb on - strand, within CA264_16215at 3772.105 kb on + strand, within CA264_16215at 3772.105 kb on + strand, within CA264_16215at 3772.260 kb on + strand, within CA264_16215at 3772.261 kb on - strand, within CA264_16215at 3772.332 kb on + strand, within CA264_16215at 3772.373 kb on + strand, within CA264_16215at 3772.426 kb on + strand, within CA264_16215at 3772.427 kb on - strand, within CA264_16215at 3772.468 kb on + strandat 3772.469 kb on - strandat 3772.515 kb on + strandat 3772.523 kb on + strandat 3772.581 kb on + strandat 3772.632 kb on + strandat 3772.635 kb on - strandat 3772.775 kb on - strandat 3772.798 kb on + strand, within CA264_16220at 3772.799 kb on - strand, within CA264_16220at 3773.020 kb on - strand, within CA264_16220at 3773.021 kb on + strand, within CA264_16220at 3773.022 kb on - strand, within CA264_16220at 3773.022 kb on - strand, within CA264_16220at 3773.111 kb on + strand, within CA264_16220at 3773.111 kb on + strand, within CA264_16220at 3773.189 kb on + strand, within CA264_16220at 3773.190 kb on - strand, within CA264_16220at 3773.204 kb on + strand, within CA264_16220at 3773.212 kb on + strand, within CA264_16220at 3773.276 kb on + strand, within CA264_16220at 3773.340 kb on + strand, within CA264_16220at 3773.345 kb on + strand, within CA264_16220at 3773.346 kb on - strand, within CA264_16220at 3773.494 kb on + strand, within CA264_16220at 3773.495 kb on - strand, within CA264_16220at 3773.498 kb on + strand, within CA264_16220at 3773.650 kb on - strand, within CA264_16220at 3773.805 kb on + strandat 3773.848 kb on - strandat 3773.848 kb on - strandat 3773.916 kb on - strandat 3773.916 kb on - strandat 3773.916 kb on - strandat 3773.917 kb on + strandat 3773.983 kb on - strandat 3774.026 kb on + strandat 3774.040 kb on - strandat 3774.084 kb on + strandat 3774.085 kb on - strandat 3774.120 kb on + strandat 3774.127 kb on - strandat 3774.287 kb on + strand, within CA264_16225at 3774.288 kb on - strand, within CA264_16225at 3774.337 kb on - strand, within CA264_16225at 3774.337 kb on - strand, within CA264_16225at 3774.338 kb on + strand, within CA264_16225at 3774.338 kb on + strand, within CA264_16225at 3774.347 kb on + strand, within CA264_16225at 3774.347 kb on + strand, within CA264_16225at 3774.417 kb on - strand, within CA264_16225at 3774.431 kb on + strand, within CA264_16225at 3774.432 kb on - strand, within CA264_16225at 3774.490 kb on + strand, within CA264_16225at 3774.490 kb on + strand, within CA264_16225at 3774.738 kb on + strand, within CA264_16225at 3774.738 kb on + strand, within CA264_16225at 3774.739 kb on - strand, within CA264_16225at 3774.840 kb on + strand, within CA264_16225at 3774.841 kb on - strand, within CA264_16225at 3774.857 kb on + strand, within CA264_16225at 3774.874 kb on + strand, within CA264_16225

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.05 mM
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3,771,650 + CA264_16210 0.47 +0.7
3,771,725 - CA264_16210 0.59 -0.5
3,771,725 - CA264_16210 0.59 +0.5
3,771,729 - CA264_16210 0.60 +0.2
3,771,788 + CA264_16210 0.69 -0.9
3,771,789 - CA264_16210 0.69 -0.6
3,771,789 - CA264_16210 0.69 -0.1
3,771,820 + CA264_16210 0.74 -0.1
3,771,820 + CA264_16210 0.74 +0.0
3,771,820 + CA264_16210 0.74 -0.5
3,771,821 - CA264_16210 0.74 -0.1
3,771,864 - CA264_16210 0.81 -0.3
3,771,864 - CA264_16210 0.81 +1.3
3,771,983 + -0.3
3,771,987 + +1.9
3,771,987 + -0.3
3,771,988 - -0.4
3,771,988 - +0.5
3,771,990 - -0.7
3,772,007 + +0.0
3,772,082 + CA264_16215 0.13 -0.3
3,772,101 + CA264_16215 0.17 -0.7
3,772,102 - CA264_16215 0.17 -0.6
3,772,105 + CA264_16215 0.17 -0.7
3,772,105 + CA264_16215 0.17 +0.8
3,772,260 + CA264_16215 0.49 +0.0
3,772,261 - CA264_16215 0.49 +1.9
3,772,332 + CA264_16215 0.63 -0.7
3,772,373 + CA264_16215 0.71 -1.3
3,772,426 + CA264_16215 0.82 +0.1
3,772,427 - CA264_16215 0.82 -1.1
3,772,468 + -0.0
3,772,469 - -0.3
3,772,515 + -0.6
3,772,523 + +0.5
3,772,581 + -0.5
3,772,632 + +0.7
3,772,635 - -0.4
3,772,775 - -0.2
3,772,798 + CA264_16220 0.12 -0.5
3,772,799 - CA264_16220 0.12 -0.7
3,773,020 - CA264_16220 0.29 -0.2
3,773,021 + CA264_16220 0.29 -1.1
3,773,022 - CA264_16220 0.29 -0.7
3,773,022 - CA264_16220 0.29 -0.9
3,773,111 + CA264_16220 0.36 -0.6
3,773,111 + CA264_16220 0.36 -1.3
3,773,189 + CA264_16220 0.42 -0.7
3,773,190 - CA264_16220 0.42 +0.5
3,773,204 + CA264_16220 0.43 +0.2
3,773,212 + CA264_16220 0.44 -0.7
3,773,276 + CA264_16220 0.49 -0.5
3,773,340 + CA264_16220 0.54 -0.6
3,773,345 + CA264_16220 0.54 +0.8
3,773,346 - CA264_16220 0.54 -0.4
3,773,494 + CA264_16220 0.66 -0.3
3,773,495 - CA264_16220 0.66 +1.6
3,773,498 + CA264_16220 0.66 -0.6
3,773,650 - CA264_16220 0.78 +0.6
3,773,805 + -0.6
3,773,848 - -1.3
3,773,848 - -0.7
3,773,916 - -1.0
3,773,916 - -0.1
3,773,916 - -0.3
3,773,917 + -1.4
3,773,983 - +0.9
3,774,026 + +0.5
3,774,040 - -0.0
3,774,084 + -0.4
3,774,085 - -0.6
3,774,120 + -1.0
3,774,127 - -0.1
3,774,287 + CA264_16225 0.11 +0.5
3,774,288 - CA264_16225 0.11 -1.1
3,774,337 - CA264_16225 0.13 -0.7
3,774,337 - CA264_16225 0.13 +0.2
3,774,338 + CA264_16225 0.13 -0.8
3,774,338 + CA264_16225 0.13 -1.0
3,774,347 + CA264_16225 0.13 -0.7
3,774,347 + CA264_16225 0.13 -0.7
3,774,417 - CA264_16225 0.16 -0.3
3,774,431 + CA264_16225 0.17 -0.3
3,774,432 - CA264_16225 0.17 -1.1
3,774,490 + CA264_16225 0.19 -1.6
3,774,490 + CA264_16225 0.19 -1.7
3,774,738 + CA264_16225 0.29 -0.9
3,774,738 + CA264_16225 0.29 +0.7
3,774,739 - CA264_16225 0.29 -0.5
3,774,840 + CA264_16225 0.34 -0.2
3,774,841 - CA264_16225 0.34 -1.2
3,774,857 + CA264_16225 0.34 +0.6
3,774,874 + CA264_16225 0.35 -1.0

Or see this region's nucleotide sequence