Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15360

Experiment: m.b. Cobalt chloride 0.05 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15355 and CA264_15360 are separated by 246 nucleotidesCA264_15360 and CA264_15365 are separated by 52 nucleotidesCA264_15365 and CA264_15370 are separated by 107 nucleotides CA264_15355: CA264_15355 - bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase, at 3,596,828 to 3,599,284 _15355 CA264_15360: CA264_15360 - permease, at 3,599,531 to 3,600,478 _15360 CA264_15365: CA264_15365 - hypothetical protein, at 3,600,531 to 3,600,878 _15365 CA264_15370: CA264_15370 - hypothetical protein, at 3,600,986 to 3,603,574 _15370 Position (kb) 3599 3600 3601Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3598.569 kb on - strand, within CA264_15355at 3599.107 kb on - strandat 3599.334 kb on + strandat 3599.513 kb on + strandat 3599.514 kb on - strandat 3599.516 kb on - strandat 3599.543 kb on - strandat 3599.559 kb on - strandat 3599.585 kb on - strandat 3599.596 kb on + strandat 3599.596 kb on + strandat 3599.736 kb on + strand, within CA264_15360at 3599.828 kb on + strand, within CA264_15360at 3599.842 kb on + strand, within CA264_15360at 3599.849 kb on - strand, within CA264_15360at 3599.887 kb on + strand, within CA264_15360at 3600.024 kb on + strand, within CA264_15360at 3600.044 kb on + strand, within CA264_15360at 3600.045 kb on - strand, within CA264_15360at 3600.139 kb on + strand, within CA264_15360at 3600.287 kb on + strand, within CA264_15360at 3600.287 kb on + strand, within CA264_15360at 3600.287 kb on + strand, within CA264_15360at 3600.287 kb on + strand, within CA264_15360at 3600.287 kb on + strand, within CA264_15360at 3600.293 kb on - strand, within CA264_15360at 3600.396 kb on - strandat 3600.516 kb on + strandat 3600.517 kb on - strandat 3600.863 kb on + strandat 3600.863 kb on + strandat 3600.864 kb on - strandat 3600.864 kb on - strandat 3600.864 kb on - strandat 3600.864 kb on - strandat 3600.872 kb on + strandat 3600.872 kb on + strandat 3600.872 kb on + strandat 3600.872 kb on + strandat 3600.873 kb on - strandat 3600.873 kb on - strandat 3600.900 kb on - strandat 3600.928 kb on + strandat 3600.928 kb on + strandat 3600.929 kb on - strandat 3600.929 kb on - strandat 3600.929 kb on - strandat 3600.933 kb on + strandat 3600.987 kb on + strandat 3600.988 kb on - strandat 3601.075 kb on + strandat 3601.124 kb on - strandat 3601.124 kb on - strandat 3601.135 kb on + strandat 3601.135 kb on + strandat 3601.136 kb on - strandat 3601.248 kb on + strand, within CA264_15370at 3601.249 kb on - strand, within CA264_15370at 3601.258 kb on - strand, within CA264_15370at 3601.282 kb on - strand, within CA264_15370at 3601.300 kb on + strand, within CA264_15370at 3601.301 kb on - strand, within CA264_15370at 3601.301 kb on - strand, within CA264_15370at 3601.301 kb on - strand, within CA264_15370at 3601.323 kb on + strand, within CA264_15370at 3601.324 kb on - strand, within CA264_15370at 3601.377 kb on + strand, within CA264_15370at 3601.377 kb on + strand, within CA264_15370at 3601.378 kb on - strand, within CA264_15370at 3601.424 kb on + strand, within CA264_15370at 3601.424 kb on + strand, within CA264_15370at 3601.440 kb on + strand, within CA264_15370at 3601.441 kb on - strand, within CA264_15370

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.05 mM
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3,598,569 - CA264_15355 0.71 -0.1
3,599,107 - -2.4
3,599,334 + -1.4
3,599,513 + -1.3
3,599,514 - +0.3
3,599,516 - +0.3
3,599,543 - -2.6
3,599,559 - -1.3
3,599,585 - -0.1
3,599,596 + +0.7
3,599,596 + -0.5
3,599,736 + CA264_15360 0.22 -0.2
3,599,828 + CA264_15360 0.31 -0.5
3,599,842 + CA264_15360 0.33 +0.0
3,599,849 - CA264_15360 0.34 -1.0
3,599,887 + CA264_15360 0.38 -1.3
3,600,024 + CA264_15360 0.52 -1.6
3,600,044 + CA264_15360 0.54 +0.3
3,600,045 - CA264_15360 0.54 -1.7
3,600,139 + CA264_15360 0.64 +0.6
3,600,287 + CA264_15360 0.80 -1.6
3,600,287 + CA264_15360 0.80 -2.0
3,600,287 + CA264_15360 0.80 +0.4
3,600,287 + CA264_15360 0.80 -0.9
3,600,287 + CA264_15360 0.80 -0.4
3,600,293 - CA264_15360 0.80 -1.4
3,600,396 - -2.2
3,600,516 + +0.0
3,600,517 - -0.1
3,600,863 + -0.1
3,600,863 + +0.1
3,600,864 - -0.8
3,600,864 - -0.0
3,600,864 - +0.4
3,600,864 - -0.1
3,600,872 + -0.3
3,600,872 + -0.5
3,600,872 + +0.1
3,600,872 + +0.3
3,600,873 - -0.7
3,600,873 - -0.7
3,600,900 - -0.3
3,600,928 + -0.4
3,600,928 + -0.2
3,600,929 - -0.4
3,600,929 - +1.8
3,600,929 - +1.4
3,600,933 + -0.3
3,600,987 + +0.1
3,600,988 - -0.8
3,601,075 + +3.2
3,601,124 - -0.1
3,601,124 - +0.8
3,601,135 + -1.0
3,601,135 + +0.4
3,601,136 - -0.7
3,601,248 + CA264_15370 0.10 -1.7
3,601,249 - CA264_15370 0.10 +0.2
3,601,258 - CA264_15370 0.11 +0.1
3,601,282 - CA264_15370 0.11 -1.0
3,601,300 + CA264_15370 0.12 -0.5
3,601,301 - CA264_15370 0.12 -1.8
3,601,301 - CA264_15370 0.12 -0.6
3,601,301 - CA264_15370 0.12 +0.9
3,601,323 + CA264_15370 0.13 +0.1
3,601,324 - CA264_15370 0.13 -0.7
3,601,377 + CA264_15370 0.15 +1.5
3,601,377 + CA264_15370 0.15 -0.2
3,601,378 - CA264_15370 0.15 -1.0
3,601,424 + CA264_15370 0.17 -0.5
3,601,424 + CA264_15370 0.17 -0.6
3,601,440 + CA264_15370 0.18 -0.1
3,601,441 - CA264_15370 0.18 +1.3

Or see this region's nucleotide sequence