Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14905

Experiment: m.b. Cobalt chloride 0.05 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14900 and CA264_14905 are separated by 494 nucleotidesCA264_14905 and CA264_14910 are separated by 90 nucleotidesCA264_14910 and CA264_14915 are separated by 89 nucleotides CA264_14900: CA264_14900 - uvrA paralog in Bacteroidetes (from data), at 3,501,208 to 3,504,015 _14900 CA264_14905: CA264_14905 - hypothetical protein, at 3,504,510 to 3,505,532 _14905 CA264_14910: CA264_14910 - 30S ribosomal protein THX, at 3,505,623 to 3,505,748 _14910 CA264_14915: CA264_14915 - MFS transporter, at 3,505,838 to 3,507,097 _14915 Position (kb) 3504 3505 3506Strain fitness (log2 ratio) -2 -1 0 1 2at 3503.559 kb on + strand, within CA264_14900at 3503.593 kb on + strand, within CA264_14900at 3503.594 kb on - strand, within CA264_14900at 3503.597 kb on - strand, within CA264_14900at 3503.619 kb on - strand, within CA264_14900at 3503.655 kb on - strand, within CA264_14900at 3503.661 kb on - strand, within CA264_14900at 3503.701 kb on - strand, within CA264_14900at 3503.707 kb on + strand, within CA264_14900at 3503.708 kb on - strand, within CA264_14900at 3503.816 kb on + strandat 3503.956 kb on + strandat 3503.958 kb on + strandat 3503.959 kb on - strandat 3503.959 kb on - strandat 3503.980 kb on + strandat 3504.015 kb on + strandat 3504.043 kb on + strandat 3504.044 kb on - strandat 3504.044 kb on - strandat 3504.046 kb on + strandat 3504.080 kb on + strandat 3504.088 kb on - strandat 3504.093 kb on + strandat 3504.093 kb on + strandat 3504.100 kb on - strandat 3504.103 kb on + strandat 3504.134 kb on - strandat 3504.197 kb on - strandat 3504.197 kb on - strandat 3504.240 kb on - strandat 3504.250 kb on + strandat 3504.306 kb on - strandat 3504.307 kb on + strandat 3504.307 kb on + strandat 3504.307 kb on + strandat 3504.308 kb on - strandat 3504.505 kb on + strandat 3504.521 kb on + strandat 3504.522 kb on - strandat 3504.530 kb on + strandat 3504.530 kb on + strandat 3504.530 kb on + strandat 3504.531 kb on - strandat 3504.542 kb on - strandat 3504.609 kb on + strandat 3504.623 kb on + strand, within CA264_14905at 3504.676 kb on + strand, within CA264_14905at 3504.723 kb on - strand, within CA264_14905at 3504.723 kb on - strand, within CA264_14905at 3505.191 kb on + strand, within CA264_14905at 3505.329 kb on - strand, within CA264_14905at 3505.333 kb on + strand, within CA264_14905at 3505.334 kb on - strand, within CA264_14905at 3505.334 kb on - strand, within CA264_14905at 3505.334 kb on - strand, within CA264_14905at 3505.334 kb on - strand, within CA264_14905at 3505.344 kb on + strand, within CA264_14905at 3505.360 kb on + strand, within CA264_14905at 3505.366 kb on + strand, within CA264_14905at 3505.367 kb on - strand, within CA264_14905at 3505.481 kb on - strandat 3505.481 kb on - strandat 3505.565 kb on + strandat 3505.565 kb on + strandat 3505.609 kb on + strandat 3505.609 kb on + strandat 3505.638 kb on - strand, within CA264_14910at 3505.701 kb on + strand, within CA264_14910at 3505.722 kb on - strand, within CA264_14910at 3505.879 kb on + strandat 3505.890 kb on - strandat 3505.898 kb on - strandat 3505.992 kb on - strand, within CA264_14915at 3506.049 kb on + strand, within CA264_14915at 3506.050 kb on - strand, within CA264_14915at 3506.239 kb on - strand, within CA264_14915at 3506.399 kb on - strand, within CA264_14915at 3506.403 kb on - strand, within CA264_14915at 3506.403 kb on - strand, within CA264_14915at 3506.503 kb on + strand, within CA264_14915at 3506.504 kb on - strand, within CA264_14915

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.05 mM
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3,503,559 + CA264_14900 0.84 +0.5
3,503,593 + CA264_14900 0.85 +0.3
3,503,594 - CA264_14900 0.85 -0.7
3,503,597 - CA264_14900 0.85 -0.4
3,503,619 - CA264_14900 0.86 -1.2
3,503,655 - CA264_14900 0.87 -0.2
3,503,661 - CA264_14900 0.87 +1.3
3,503,701 - CA264_14900 0.89 +0.6
3,503,707 + CA264_14900 0.89 -0.1
3,503,708 - CA264_14900 0.89 -0.2
3,503,816 + -0.1
3,503,956 + +0.8
3,503,958 + +0.4
3,503,959 - +0.5
3,503,959 - +0.3
3,503,980 + -0.3
3,504,015 + -0.1
3,504,043 + -0.5
3,504,044 - -0.5
3,504,044 - -0.5
3,504,046 + +0.1
3,504,080 + +0.1
3,504,088 - -0.2
3,504,093 + +1.9
3,504,093 + -0.0
3,504,100 - -0.5
3,504,103 + -0.1
3,504,134 - -0.9
3,504,197 - -0.4
3,504,197 - +0.7
3,504,240 - +0.1
3,504,250 + +1.0
3,504,306 - +0.1
3,504,307 + +0.0
3,504,307 + -0.8
3,504,307 + -0.4
3,504,308 - -0.0
3,504,505 + +0.4
3,504,521 + +0.3
3,504,522 - +0.1
3,504,530 + +0.5
3,504,530 + +0.7
3,504,530 + -0.1
3,504,531 - -0.4
3,504,542 - +0.3
3,504,609 + +0.0
3,504,623 + CA264_14905 0.11 -1.8
3,504,676 + CA264_14905 0.16 -0.4
3,504,723 - CA264_14905 0.21 -0.2
3,504,723 - CA264_14905 0.21 -0.1
3,505,191 + CA264_14905 0.67 +0.1
3,505,329 - CA264_14905 0.80 -1.2
3,505,333 + CA264_14905 0.80 -0.7
3,505,334 - CA264_14905 0.81 -0.1
3,505,334 - CA264_14905 0.81 -0.1
3,505,334 - CA264_14905 0.81 +0.2
3,505,334 - CA264_14905 0.81 -0.4
3,505,344 + CA264_14905 0.82 -1.5
3,505,360 + CA264_14905 0.83 -0.1
3,505,366 + CA264_14905 0.84 -0.8
3,505,367 - CA264_14905 0.84 +0.6
3,505,481 - -0.7
3,505,481 - -0.2
3,505,565 + -0.1
3,505,565 + -0.5
3,505,609 + +0.0
3,505,609 + -1.2
3,505,638 - CA264_14910 0.12 -0.3
3,505,701 + CA264_14910 0.62 -0.2
3,505,722 - CA264_14910 0.79 -2.0
3,505,879 + -0.4
3,505,890 - -0.6
3,505,898 - -0.1
3,505,992 - CA264_14915 0.12 -1.0
3,506,049 + CA264_14915 0.17 -0.4
3,506,050 - CA264_14915 0.17 -0.1
3,506,239 - CA264_14915 0.32 +0.2
3,506,399 - CA264_14915 0.45 +0.0
3,506,403 - CA264_14915 0.45 +0.1
3,506,403 - CA264_14915 0.45 -0.1
3,506,503 + CA264_14915 0.53 +0.2
3,506,504 - CA264_14915 0.53 +1.2

Or see this region's nucleotide sequence