Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14740

Experiment: m.b. Cobalt chloride 0.05 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_14730 and CA264_14735 are separated by 24 nucleotidesCA264_14735 and CA264_14740 are separated by 23 nucleotidesCA264_14740 and CA264_14745 are separated by 143 nucleotides CA264_14730: CA264_14730 - hypothetical protein, at 3,461,306 to 3,461,728 _14730 CA264_14735: CA264_14735 - damage-inducible protein DinB, at 3,461,753 to 3,462,229 _14735 CA264_14740: CA264_14740 - dihydroorotase, at 3,462,253 to 3,463,587 _14740 CA264_14745: CA264_14745 - DEAD/DEAH box helicase, at 3,463,731 to 3,465,092 _14745 Position (kb) 3462 3463 3464Strain fitness (log2 ratio) -2 -1 0 1at 3461.276 kb on - strandat 3461.278 kb on - strandat 3461.278 kb on - strandat 3461.279 kb on + strandat 3461.289 kb on + strandat 3461.291 kb on + strandat 3461.292 kb on - strandat 3461.294 kb on + strandat 3461.340 kb on + strandat 3461.341 kb on - strandat 3461.349 kb on - strand, within CA264_14730at 3461.384 kb on - strand, within CA264_14730at 3461.388 kb on + strand, within CA264_14730at 3461.417 kb on + strand, within CA264_14730at 3461.418 kb on - strand, within CA264_14730at 3461.456 kb on + strand, within CA264_14730at 3461.456 kb on + strand, within CA264_14730at 3461.457 kb on - strand, within CA264_14730at 3461.468 kb on + strand, within CA264_14730at 3461.551 kb on - strand, within CA264_14730at 3461.551 kb on - strand, within CA264_14730at 3461.592 kb on + strand, within CA264_14730at 3461.609 kb on + strand, within CA264_14730at 3461.610 kb on - strand, within CA264_14730at 3461.684 kb on + strand, within CA264_14730at 3461.685 kb on - strand, within CA264_14730at 3461.735 kb on + strandat 3461.749 kb on - strandat 3461.782 kb on + strandat 3461.782 kb on + strandat 3461.783 kb on - strandat 3461.783 kb on - strandat 3461.829 kb on + strand, within CA264_14735at 3461.894 kb on - strand, within CA264_14735at 3461.897 kb on + strand, within CA264_14735at 3461.912 kb on + strand, within CA264_14735at 3461.916 kb on + strand, within CA264_14735at 3461.917 kb on - strand, within CA264_14735at 3461.917 kb on - strand, within CA264_14735at 3462.016 kb on + strand, within CA264_14735at 3462.017 kb on - strand, within CA264_14735at 3462.063 kb on + strand, within CA264_14735at 3462.063 kb on + strand, within CA264_14735at 3462.063 kb on + strand, within CA264_14735at 3462.064 kb on - strand, within CA264_14735at 3462.064 kb on - strand, within CA264_14735at 3462.127 kb on + strand, within CA264_14735at 3462.198 kb on + strandat 3462.199 kb on - strandat 3462.199 kb on - strandat 3462.242 kb on + strandat 3462.243 kb on - strandat 3462.251 kb on - strandat 3462.251 kb on - strandat 3462.254 kb on + strandat 3462.254 kb on + strandat 3462.254 kb on + strandat 3462.254 kb on + strandat 3462.255 kb on - strandat 3462.255 kb on - strandat 3462.342 kb on + strandat 3462.396 kb on - strand, within CA264_14740at 3462.474 kb on - strand, within CA264_14740at 3462.685 kb on - strand, within CA264_14740at 3462.752 kb on - strand, within CA264_14740at 3462.809 kb on - strand, within CA264_14740at 3462.935 kb on + strand, within CA264_14740at 3462.967 kb on + strand, within CA264_14740at 3463.004 kb on + strand, within CA264_14740at 3463.183 kb on - strand, within CA264_14740at 3463.233 kb on - strand, within CA264_14740at 3463.263 kb on + strand, within CA264_14740at 3463.264 kb on - strand, within CA264_14740at 3463.456 kb on + strandat 3463.481 kb on - strandat 3463.534 kb on - strandat 3463.537 kb on + strandat 3463.538 kb on - strandat 3463.539 kb on + strandat 3463.540 kb on - strandat 3463.540 kb on - strandat 3463.593 kb on + strandat 3463.614 kb on - strandat 3463.616 kb on + strandat 3463.671 kb on - strandat 3463.702 kb on + strandat 3463.707 kb on + strandat 3463.717 kb on + strandat 3463.718 kb on - strandat 3463.719 kb on + strandat 3463.719 kb on + strandat 3463.720 kb on - strandat 3463.724 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.05 mM
remove
3,461,276 - +0.4
3,461,278 - -0.9
3,461,278 - -0.2
3,461,279 + +0.7
3,461,289 + +0.6
3,461,291 + -0.2
3,461,292 - +0.5
3,461,294 + +0.6
3,461,340 + -0.2
3,461,341 - +0.1
3,461,349 - CA264_14730 0.10 -0.6
3,461,384 - CA264_14730 0.18 -0.1
3,461,388 + CA264_14730 0.19 -0.2
3,461,417 + CA264_14730 0.26 -1.5
3,461,418 - CA264_14730 0.26 -0.5
3,461,456 + CA264_14730 0.35 +0.2
3,461,456 + CA264_14730 0.35 -0.1
3,461,457 - CA264_14730 0.36 +1.0
3,461,468 + CA264_14730 0.38 -0.2
3,461,551 - CA264_14730 0.58 +0.4
3,461,551 - CA264_14730 0.58 -0.2
3,461,592 + CA264_14730 0.68 -0.6
3,461,609 + CA264_14730 0.72 +0.1
3,461,610 - CA264_14730 0.72 +0.3
3,461,684 + CA264_14730 0.89 +0.5
3,461,685 - CA264_14730 0.90 +0.3
3,461,735 + +0.5
3,461,749 - +0.1
3,461,782 + -0.3
3,461,782 + +1.0
3,461,783 - -1.0
3,461,783 - +0.3
3,461,829 + CA264_14735 0.16 -0.8
3,461,894 - CA264_14735 0.30 -0.5
3,461,897 + CA264_14735 0.30 -0.9
3,461,912 + CA264_14735 0.33 -0.2
3,461,916 + CA264_14735 0.34 -0.6
3,461,917 - CA264_14735 0.34 +1.0
3,461,917 - CA264_14735 0.34 -0.3
3,462,016 + CA264_14735 0.55 +0.5
3,462,017 - CA264_14735 0.55 -1.3
3,462,063 + CA264_14735 0.65 -1.6
3,462,063 + CA264_14735 0.65 +0.6
3,462,063 + CA264_14735 0.65 +0.1
3,462,064 - CA264_14735 0.65 +1.6
3,462,064 - CA264_14735 0.65 +0.5
3,462,127 + CA264_14735 0.78 -1.2
3,462,198 + -0.1
3,462,199 - -0.0
3,462,199 - +0.3
3,462,242 + -0.3
3,462,243 - -1.3
3,462,251 - +0.0
3,462,251 - +0.4
3,462,254 + +0.9
3,462,254 + -1.0
3,462,254 + +0.8
3,462,254 + +0.1
3,462,255 - +1.0
3,462,255 - +0.3
3,462,342 + -0.4
3,462,396 - CA264_14740 0.11 -1.3
3,462,474 - CA264_14740 0.17 -1.2
3,462,685 - CA264_14740 0.32 -0.8
3,462,752 - CA264_14740 0.37 -0.8
3,462,809 - CA264_14740 0.42 -0.6
3,462,935 + CA264_14740 0.51 -0.5
3,462,967 + CA264_14740 0.53 +0.2
3,463,004 + CA264_14740 0.56 +0.2
3,463,183 - CA264_14740 0.70 -1.3
3,463,233 - CA264_14740 0.73 -1.5
3,463,263 + CA264_14740 0.76 -1.8
3,463,264 - CA264_14740 0.76 -0.4
3,463,456 + -2.2
3,463,481 - -0.9
3,463,534 - +0.5
3,463,537 + -2.2
3,463,538 - -1.2
3,463,539 + +1.0
3,463,540 - -2.2
3,463,540 - -1.1
3,463,593 + -0.4
3,463,614 - +1.3
3,463,616 + -0.2
3,463,671 - +0.4
3,463,702 + +1.0
3,463,707 + -1.4
3,463,717 + -1.1
3,463,718 - -0.9
3,463,719 + -0.1
3,463,719 + -0.2
3,463,720 - -0.2
3,463,724 + -0.2

Or see this region's nucleotide sequence