Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13195

Experiment: m.b. Cobalt chloride 0.05 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13190 and CA264_13195 are separated by 413 nucleotidesCA264_13195 and CA264_13200 are separated by 268 nucleotides CA264_13190: CA264_13190 - hypothetical protein, at 3,073,243 to 3,076,728 _13190 CA264_13195: CA264_13195 - hypothetical protein, at 3,077,142 to 3,078,170 _13195 CA264_13200: CA264_13200 - lysine--tRNA ligase, at 3,078,439 to 3,079,983 _13200 Position (kb) 3077 3078 3079Strain fitness (log2 ratio) -3 -2 -1 0 1at 3076.150 kb on - strand, within CA264_13190at 3076.175 kb on + strand, within CA264_13190at 3076.180 kb on + strand, within CA264_13190at 3076.181 kb on - strand, within CA264_13190at 3076.197 kb on + strand, within CA264_13190at 3076.198 kb on - strand, within CA264_13190at 3076.198 kb on - strand, within CA264_13190at 3076.198 kb on - strand, within CA264_13190at 3076.303 kb on - strand, within CA264_13190at 3076.347 kb on + strand, within CA264_13190at 3076.363 kb on - strand, within CA264_13190at 3076.380 kb on + strandat 3076.424 kb on + strandat 3076.425 kb on - strandat 3076.425 kb on - strandat 3076.425 kb on - strandat 3076.425 kb on - strandat 3076.429 kb on + strandat 3076.430 kb on - strandat 3076.496 kb on + strandat 3076.499 kb on - strandat 3076.503 kb on + strandat 3076.504 kb on - strandat 3076.604 kb on - strandat 3076.604 kb on - strandat 3076.640 kb on + strandat 3076.640 kb on + strandat 3076.722 kb on + strandat 3076.789 kb on - strandat 3076.794 kb on + strandat 3076.794 kb on + strandat 3076.794 kb on + strandat 3076.795 kb on - strandat 3076.817 kb on - strandat 3076.864 kb on - strandat 3076.877 kb on - strandat 3076.878 kb on + strandat 3076.878 kb on + strandat 3076.879 kb on - strandat 3076.880 kb on + strandat 3076.880 kb on + strandat 3076.893 kb on - strandat 3076.933 kb on + strandat 3077.141 kb on + strandat 3077.248 kb on - strand, within CA264_13195at 3077.272 kb on + strand, within CA264_13195at 3077.272 kb on + strand, within CA264_13195at 3077.273 kb on - strand, within CA264_13195at 3077.279 kb on + strand, within CA264_13195at 3077.279 kb on + strand, within CA264_13195at 3077.359 kb on + strand, within CA264_13195at 3077.434 kb on - strand, within CA264_13195at 3077.472 kb on + strand, within CA264_13195at 3077.473 kb on - strand, within CA264_13195at 3077.473 kb on - strand, within CA264_13195at 3077.473 kb on - strand, within CA264_13195at 3077.475 kb on + strand, within CA264_13195at 3077.476 kb on - strand, within CA264_13195at 3077.583 kb on + strand, within CA264_13195at 3077.584 kb on - strand, within CA264_13195at 3077.620 kb on - strand, within CA264_13195at 3077.658 kb on + strand, within CA264_13195at 3077.659 kb on - strand, within CA264_13195at 3077.816 kb on - strand, within CA264_13195at 3077.868 kb on - strand, within CA264_13195at 3077.871 kb on - strand, within CA264_13195at 3077.939 kb on - strand, within CA264_13195at 3077.958 kb on - strand, within CA264_13195at 3077.995 kb on - strand, within CA264_13195at 3078.018 kb on + strand, within CA264_13195at 3078.019 kb on - strand, within CA264_13195at 3078.103 kb on + strandat 3078.103 kb on + strandat 3078.123 kb on - strandat 3078.169 kb on - strandat 3078.253 kb on + strandat 3078.253 kb on + strandat 3078.270 kb on - strandat 3078.274 kb on + strandat 3078.386 kb on + strandat 3078.410 kb on - strandat 3078.447 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.05 mM
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3,076,150 - CA264_13190 0.83 -0.3
3,076,175 + CA264_13190 0.84 +0.3
3,076,180 + CA264_13190 0.84 -0.7
3,076,181 - CA264_13190 0.84 -0.3
3,076,197 + CA264_13190 0.85 -0.6
3,076,198 - CA264_13190 0.85 -0.1
3,076,198 - CA264_13190 0.85 +0.1
3,076,198 - CA264_13190 0.85 -0.3
3,076,303 - CA264_13190 0.88 -0.6
3,076,347 + CA264_13190 0.89 -0.1
3,076,363 - CA264_13190 0.90 -0.5
3,076,380 + -1.0
3,076,424 + +0.7
3,076,425 - -0.5
3,076,425 - +0.5
3,076,425 - +0.6
3,076,425 - +0.1
3,076,429 + -0.5
3,076,430 - -0.3
3,076,496 + +0.8
3,076,499 - -0.5
3,076,503 + +1.4
3,076,504 - +0.2
3,076,604 - -0.2
3,076,604 - -1.6
3,076,640 + -1.1
3,076,640 + -0.6
3,076,722 + -1.6
3,076,789 - -1.1
3,076,794 + -0.2
3,076,794 + +0.0
3,076,794 + +0.3
3,076,795 - -0.4
3,076,817 - +0.5
3,076,864 - -0.3
3,076,877 - -0.1
3,076,878 + -2.9
3,076,878 + -0.5
3,076,879 - +0.4
3,076,880 + -0.5
3,076,880 + +0.6
3,076,893 - -0.7
3,076,933 + -0.7
3,077,141 + -0.7
3,077,248 - CA264_13195 0.10 -0.3
3,077,272 + CA264_13195 0.13 +0.1
3,077,272 + CA264_13195 0.13 +0.2
3,077,273 - CA264_13195 0.13 +0.1
3,077,279 + CA264_13195 0.13 +0.1
3,077,279 + CA264_13195 0.13 -0.1
3,077,359 + CA264_13195 0.21 -0.8
3,077,434 - CA264_13195 0.28 +0.7
3,077,472 + CA264_13195 0.32 -0.6
3,077,473 - CA264_13195 0.32 -0.3
3,077,473 - CA264_13195 0.32 +1.1
3,077,473 - CA264_13195 0.32 -0.8
3,077,475 + CA264_13195 0.32 -0.1
3,077,476 - CA264_13195 0.32 +1.6
3,077,583 + CA264_13195 0.43 -0.1
3,077,584 - CA264_13195 0.43 -0.1
3,077,620 - CA264_13195 0.46 -0.2
3,077,658 + CA264_13195 0.50 -0.0
3,077,659 - CA264_13195 0.50 -0.5
3,077,816 - CA264_13195 0.66 -0.3
3,077,868 - CA264_13195 0.71 +0.1
3,077,871 - CA264_13195 0.71 -0.3
3,077,939 - CA264_13195 0.77 +0.0
3,077,958 - CA264_13195 0.79 -0.2
3,077,995 - CA264_13195 0.83 +1.6
3,078,018 + CA264_13195 0.85 -0.4
3,078,019 - CA264_13195 0.85 -0.4
3,078,103 + +0.7
3,078,103 + +0.1
3,078,123 - -0.7
3,078,169 - +0.2
3,078,253 + -0.3
3,078,253 + +0.7
3,078,270 - -0.4
3,078,274 + -0.3
3,078,386 + -0.6
3,078,410 - -0.5
3,078,447 - +1.1

Or see this region's nucleotide sequence