Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10305

Experiment: m.b. Cobalt chloride 0.05 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_10300 and CA264_10305 are separated by 76 nucleotidesCA264_10305 and CA264_10310 are separated by 280 nucleotides CA264_10300: CA264_10300 - RagB/SusD family nutrient uptake outer membrane protein, at 2,394,899 to 2,396,257 _10300 CA264_10305: CA264_10305 - hypothetical protein, at 2,396,334 to 2,396,630 _10305 CA264_10310: CA264_10310 - hypothetical protein, at 2,396,911 to 2,397,492 _10310 Position (kb) 2396 2397Strain fitness (log2 ratio) -2 -1 0 1at 2395.364 kb on + strand, within CA264_10300at 2395.460 kb on + strand, within CA264_10300at 2395.460 kb on + strand, within CA264_10300at 2395.461 kb on - strand, within CA264_10300at 2395.625 kb on - strand, within CA264_10300at 2395.676 kb on + strand, within CA264_10300at 2395.776 kb on - strand, within CA264_10300at 2395.784 kb on + strand, within CA264_10300at 2395.841 kb on + strand, within CA264_10300at 2395.842 kb on - strand, within CA264_10300at 2395.842 kb on - strand, within CA264_10300at 2395.859 kb on + strand, within CA264_10300at 2395.859 kb on + strand, within CA264_10300at 2395.860 kb on - strand, within CA264_10300at 2395.907 kb on + strand, within CA264_10300at 2395.907 kb on + strand, within CA264_10300at 2395.907 kb on + strand, within CA264_10300at 2395.908 kb on - strand, within CA264_10300at 2395.929 kb on - strand, within CA264_10300at 2396.138 kb on - strandat 2396.169 kb on - strandat 2396.321 kb on + strandat 2396.497 kb on + strand, within CA264_10305at 2396.498 kb on - strand, within CA264_10305at 2396.613 kb on + strandat 2396.614 kb on - strandat 2396.686 kb on + strandat 2396.768 kb on - strandat 2396.820 kb on + strandat 2396.821 kb on - strandat 2396.852 kb on + strandat 2396.959 kb on + strandat 2396.959 kb on + strandat 2396.963 kb on + strandat 2397.112 kb on + strand, within CA264_10310at 2397.151 kb on + strand, within CA264_10310at 2397.151 kb on + strand, within CA264_10310at 2397.151 kb on + strand, within CA264_10310at 2397.152 kb on - strand, within CA264_10310at 2397.152 kb on - strand, within CA264_10310at 2397.173 kb on + strand, within CA264_10310at 2397.174 kb on - strand, within CA264_10310at 2397.203 kb on + strand, within CA264_10310at 2397.203 kb on + strand, within CA264_10310at 2397.422 kb on + strand, within CA264_10310at 2397.423 kb on - strand, within CA264_10310at 2397.452 kb on + strandat 2397.452 kb on + strandat 2397.452 kb on + strandat 2397.452 kb on + strandat 2397.452 kb on + strandat 2397.453 kb on - strandat 2397.535 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.05 mM
remove
2,395,364 + CA264_10300 0.34 +0.0
2,395,460 + CA264_10300 0.41 -0.2
2,395,460 + CA264_10300 0.41 -0.9
2,395,461 - CA264_10300 0.41 +0.6
2,395,625 - CA264_10300 0.53 +0.1
2,395,676 + CA264_10300 0.57 -0.0
2,395,776 - CA264_10300 0.65 -0.7
2,395,784 + CA264_10300 0.65 +0.9
2,395,841 + CA264_10300 0.69 +0.1
2,395,842 - CA264_10300 0.69 -0.3
2,395,842 - CA264_10300 0.69 +0.0
2,395,859 + CA264_10300 0.71 -0.1
2,395,859 + CA264_10300 0.71 +1.0
2,395,860 - CA264_10300 0.71 +0.1
2,395,907 + CA264_10300 0.74 +0.2
2,395,907 + CA264_10300 0.74 +0.4
2,395,907 + CA264_10300 0.74 -0.1
2,395,908 - CA264_10300 0.74 -0.4
2,395,929 - CA264_10300 0.76 +0.2
2,396,138 - -1.3
2,396,169 - -0.2
2,396,321 + -0.4
2,396,497 + CA264_10305 0.55 -0.3
2,396,498 - CA264_10305 0.55 -1.4
2,396,613 + +0.4
2,396,614 - -0.6
2,396,686 + +0.4
2,396,768 - -0.6
2,396,820 + -0.1
2,396,821 - -0.5
2,396,852 + -1.3
2,396,959 + -0.1
2,396,959 + -0.4
2,396,963 + -0.2
2,397,112 + CA264_10310 0.35 -1.9
2,397,151 + CA264_10310 0.41 +0.2
2,397,151 + CA264_10310 0.41 -0.1
2,397,151 + CA264_10310 0.41 +1.1
2,397,152 - CA264_10310 0.41 +0.0
2,397,152 - CA264_10310 0.41 +0.9
2,397,173 + CA264_10310 0.45 -0.9
2,397,174 - CA264_10310 0.45 -0.5
2,397,203 + CA264_10310 0.50 -0.7
2,397,203 + CA264_10310 0.50 +0.3
2,397,422 + CA264_10310 0.88 -0.2
2,397,423 - CA264_10310 0.88 -0.6
2,397,452 + +0.0
2,397,452 + +0.0
2,397,452 + -1.7
2,397,452 + -0.3
2,397,452 + +0.3
2,397,453 - +0.7
2,397,535 + -1.0

Or see this region's nucleotide sequence