Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10285

Experiment: m.b. Cobalt chloride 0.05 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_10275 and CA264_10280 are separated by 332 nucleotidesCA264_10280 and CA264_10285 are separated by 93 nucleotidesCA264_10285 and CA264_10290 are separated by 66 nucleotides CA264_10275: CA264_10275 - transcriptional regulator, at 2,388,694 to 2,389,089 _10275 CA264_10280: CA264_10280 - hypothetical protein, at 2,389,422 to 2,389,739 _10280 CA264_10285: CA264_10285 - hypothetical protein, at 2,389,833 to 2,390,153 _10285 CA264_10290: CA264_10290 - hypothetical protein, at 2,390,220 to 2,391,650 _10290 Position (kb) 2389 2390 2391Strain fitness (log2 ratio) -1 0 1 2at 2388.850 kb on - strand, within CA264_10275at 2388.940 kb on + strand, within CA264_10275at 2389.096 kb on - strandat 2389.140 kb on - strandat 2389.152 kb on + strandat 2389.152 kb on + strandat 2389.153 kb on - strandat 2389.183 kb on + strandat 2389.184 kb on - strandat 2389.185 kb on + strandat 2389.185 kb on + strandat 2389.186 kb on - strandat 2389.211 kb on + strandat 2389.212 kb on - strandat 2389.219 kb on + strandat 2389.220 kb on - strandat 2389.274 kb on - strandat 2389.345 kb on + strandat 2389.442 kb on + strandat 2389.495 kb on - strand, within CA264_10280at 2389.495 kb on - strand, within CA264_10280at 2389.715 kb on - strandat 2389.718 kb on - strandat 2389.718 kb on - strandat 2389.748 kb on + strandat 2389.749 kb on - strandat 2389.780 kb on + strandat 2389.780 kb on + strandat 2389.781 kb on - strandat 2389.781 kb on - strandat 2389.812 kb on - strandat 2389.812 kb on - strandat 2389.847 kb on + strandat 2389.848 kb on - strandat 2389.953 kb on + strand, within CA264_10285at 2390.039 kb on + strand, within CA264_10285at 2390.219 kb on + strandat 2390.219 kb on + strandat 2390.219 kb on + strandat 2390.219 kb on + strandat 2390.219 kb on + strandat 2390.220 kb on - strandat 2390.220 kb on - strandat 2390.220 kb on - strandat 2390.277 kb on + strandat 2390.529 kb on + strand, within CA264_10290at 2390.529 kb on + strand, within CA264_10290at 2390.530 kb on - strand, within CA264_10290at 2390.614 kb on + strand, within CA264_10290at 2390.643 kb on - strand, within CA264_10290at 2390.700 kb on + strand, within CA264_10290at 2391.057 kb on + strand, within CA264_10290at 2391.057 kb on + strand, within CA264_10290

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.05 mM
remove
2,388,850 - CA264_10275 0.39 -0.0
2,388,940 + CA264_10275 0.62 -0.2
2,389,096 - -0.1
2,389,140 - +0.3
2,389,152 + -1.2
2,389,152 + -0.5
2,389,153 - +0.1
2,389,183 + -0.8
2,389,184 - -0.1
2,389,185 + +2.4
2,389,185 + -0.1
2,389,186 - -0.5
2,389,211 + -0.8
2,389,212 - +0.8
2,389,219 + +0.8
2,389,220 - -0.5
2,389,274 - -0.7
2,389,345 + -0.1
2,389,442 + -0.3
2,389,495 - CA264_10280 0.23 -0.4
2,389,495 - CA264_10280 0.23 +0.4
2,389,715 - -1.2
2,389,718 - -0.7
2,389,718 - -0.5
2,389,748 + -0.7
2,389,749 - -0.8
2,389,780 + -0.8
2,389,780 + -0.1
2,389,781 - -0.5
2,389,781 - -0.1
2,389,812 - -0.1
2,389,812 - +0.6
2,389,847 + -0.2
2,389,848 - -0.1
2,389,953 + CA264_10285 0.37 -1.5
2,390,039 + CA264_10285 0.64 -1.6
2,390,219 + +0.4
2,390,219 + +0.1
2,390,219 + -0.3
2,390,219 + -0.7
2,390,219 + -0.1
2,390,220 - -0.5
2,390,220 - -0.5
2,390,220 - -1.4
2,390,277 + -0.2
2,390,529 + CA264_10290 0.22 -0.6
2,390,529 + CA264_10290 0.22 -0.5
2,390,530 - CA264_10290 0.22 +1.6
2,390,614 + CA264_10290 0.28 +2.1
2,390,643 - CA264_10290 0.30 +0.6
2,390,700 + CA264_10290 0.34 +0.1
2,391,057 + CA264_10290 0.58 -0.6
2,391,057 + CA264_10290 0.58 -0.3

Or see this region's nucleotide sequence