Experiment: m.b. Cobalt chloride 0.05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_10165 and CA264_10170 are separated by 30 nucleotides CA264_10170 and CA264_10175 are separated by 143 nucleotides CA264_10175 and CA264_10180 are separated by 148 nucleotides
CA264_10165: CA264_10165 - T9SS C-terminal target domain-containing protein, at 2,361,003 to 2,363,897
_10165
CA264_10170: CA264_10170 - endonuclease, at 2,363,928 to 2,365,268
_10170
CA264_10175: CA264_10175 - hypothetical protein, at 2,365,412 to 2,365,903
_10175
CA264_10180: CA264_10180 - SOS mutagenesis and repair protein UmuC, at 2,366,052 to 2,367,320
_10180
Position (kb)
2363
2364
2365
2366 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2362.988 kb on + strand, within CA264_10165 at 2363.055 kb on - strand, within CA264_10165 at 2363.087 kb on + strand, within CA264_10165 at 2363.116 kb on - strand, within CA264_10165 at 2363.872 kb on + strand at 2363.872 kb on + strand at 2363.924 kb on - strand at 2363.929 kb on + strand at 2363.929 kb on + strand at 2363.998 kb on - strand at 2364.244 kb on + strand, within CA264_10170 at 2364.244 kb on + strand, within CA264_10170 at 2364.263 kb on - strand, within CA264_10170 at 2364.287 kb on - strand, within CA264_10170 at 2364.299 kb on - strand, within CA264_10170 at 2364.299 kb on - strand, within CA264_10170 at 2364.598 kb on + strand, within CA264_10170 at 2364.623 kb on + strand, within CA264_10170 at 2364.636 kb on + strand, within CA264_10170 at 2364.656 kb on + strand, within CA264_10170 at 2364.657 kb on - strand, within CA264_10170 at 2364.712 kb on + strand, within CA264_10170 at 2364.768 kb on - strand, within CA264_10170 at 2364.862 kb on + strand, within CA264_10170 at 2364.937 kb on + strand, within CA264_10170 at 2364.937 kb on + strand, within CA264_10170 at 2365.255 kb on + strand at 2365.256 kb on - strand at 2365.264 kb on - strand at 2365.264 kb on - strand at 2365.270 kb on + strand at 2365.271 kb on - strand at 2365.271 kb on - strand at 2365.271 kb on - strand at 2365.271 kb on - strand at 2365.279 kb on + strand at 2365.351 kb on + strand at 2365.352 kb on - strand at 2365.708 kb on - strand, within CA264_10175 at 2365.796 kb on + strand, within CA264_10175 at 2365.796 kb on + strand, within CA264_10175 at 2365.802 kb on - strand, within CA264_10175 at 2365.818 kb on + strand, within CA264_10175 at 2365.825 kb on + strand, within CA264_10175 at 2365.826 kb on - strand, within CA264_10175 at 2365.826 kb on - strand, within CA264_10175 at 2365.870 kb on + strand at 2365.928 kb on + strand at 2365.968 kb on + strand at 2365.999 kb on - strand at 2366.089 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.05 mM remove 2,362,988 + CA264_10165 0.69 -0.7 2,363,055 - CA264_10165 0.71 +0.2 2,363,087 + CA264_10165 0.72 +1.7 2,363,116 - CA264_10165 0.73 -0.7 2,363,872 + +0.3 2,363,872 + +0.0 2,363,924 - +0.1 2,363,929 + -0.1 2,363,929 + +0.1 2,363,998 - +1.2 2,364,244 + CA264_10170 0.24 +1.4 2,364,244 + CA264_10170 0.24 +0.4 2,364,263 - CA264_10170 0.25 -0.1 2,364,287 - CA264_10170 0.27 +0.8 2,364,299 - CA264_10170 0.28 -0.3 2,364,299 - CA264_10170 0.28 -0.3 2,364,598 + CA264_10170 0.50 +0.0 2,364,623 + CA264_10170 0.52 +0.9 2,364,636 + CA264_10170 0.53 -0.0 2,364,656 + CA264_10170 0.54 -1.5 2,364,657 - CA264_10170 0.54 -0.5 2,364,712 + CA264_10170 0.58 +0.8 2,364,768 - CA264_10170 0.63 +0.1 2,364,862 + CA264_10170 0.70 +0.5 2,364,937 + CA264_10170 0.75 +1.5 2,364,937 + CA264_10170 0.75 +0.1 2,365,255 + +0.4 2,365,256 - -0.1 2,365,264 - +2.1 2,365,264 - +0.7 2,365,270 + +0.9 2,365,271 - +0.8 2,365,271 - +1.1 2,365,271 - -0.4 2,365,271 - +0.7 2,365,279 + +0.3 2,365,351 + -1.2 2,365,352 - -2.2 2,365,708 - CA264_10175 0.60 -0.5 2,365,796 + CA264_10175 0.78 -0.1 2,365,796 + CA264_10175 0.78 -0.0 2,365,802 - CA264_10175 0.79 -0.7 2,365,818 + CA264_10175 0.83 +0.2 2,365,825 + CA264_10175 0.84 -0.8 2,365,826 - CA264_10175 0.84 -0.7 2,365,826 - CA264_10175 0.84 +0.2 2,365,870 + -0.5 2,365,928 + -0.5 2,365,968 + +0.8 2,365,999 - -0.1 2,366,089 + +0.1
Or see this region's nucleotide sequence