Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07215

Experiment: m.b. Cobalt chloride 0.05 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07205 and CA264_07210 are separated by 193 nucleotidesCA264_07210 and CA264_07215 are separated by 74 nucleotidesCA264_07215 and CA264_07220 are separated by 201 nucleotidesCA264_07220 and CA264_07225 are separated by 247 nucleotides CA264_07205: CA264_07205 - hypothetical protein, at 1,664,677 to 1,665,123 _07205 CA264_07210: CA264_07210 - SIMPL domain-containing protein, at 1,665,317 to 1,666,045 _07210 CA264_07215: CA264_07215 - peptidase M61, at 1,666,120 to 1,667,823 _07215 CA264_07220: CA264_07220 - hypothetical protein, at 1,668,025 to 1,668,447 _07220 CA264_07225: CA264_07225 - hypothetical protein, at 1,668,695 to 1,669,294 _07225 Position (kb) 1666 1667 1668Strain fitness (log2 ratio) -2 -1 0 1 2at 1665.167 kb on - strandat 1665.185 kb on + strandat 1665.250 kb on + strandat 1665.251 kb on - strandat 1665.263 kb on - strandat 1665.263 kb on - strandat 1665.264 kb on + strandat 1665.265 kb on - strandat 1665.283 kb on + strandat 1665.283 kb on + strandat 1665.284 kb on - strandat 1665.367 kb on + strandat 1665.369 kb on + strandat 1665.370 kb on - strandat 1665.430 kb on + strand, within CA264_07210at 1665.459 kb on + strand, within CA264_07210at 1665.459 kb on + strand, within CA264_07210at 1665.459 kb on + strand, within CA264_07210at 1665.459 kb on + strand, within CA264_07210at 1665.460 kb on - strand, within CA264_07210at 1665.492 kb on + strand, within CA264_07210at 1665.525 kb on - strand, within CA264_07210at 1665.525 kb on - strand, within CA264_07210at 1665.551 kb on - strand, within CA264_07210at 1665.556 kb on - strand, within CA264_07210at 1665.556 kb on - strand, within CA264_07210at 1665.563 kb on + strand, within CA264_07210at 1665.564 kb on - strand, within CA264_07210at 1665.564 kb on - strand, within CA264_07210at 1665.597 kb on + strand, within CA264_07210at 1665.597 kb on + strand, within CA264_07210at 1665.630 kb on - strand, within CA264_07210at 1665.650 kb on + strand, within CA264_07210at 1665.675 kb on - strand, within CA264_07210at 1665.675 kb on - strand, within CA264_07210at 1665.699 kb on + strand, within CA264_07210at 1665.699 kb on + strand, within CA264_07210at 1665.723 kb on + strand, within CA264_07210at 1665.757 kb on + strand, within CA264_07210at 1665.773 kb on - strand, within CA264_07210at 1665.780 kb on + strand, within CA264_07210at 1665.781 kb on - strand, within CA264_07210at 1665.781 kb on - strand, within CA264_07210at 1665.797 kb on + strand, within CA264_07210at 1665.797 kb on + strand, within CA264_07210at 1665.798 kb on - strand, within CA264_07210at 1665.798 kb on - strand, within CA264_07210at 1665.800 kb on + strand, within CA264_07210at 1665.831 kb on + strand, within CA264_07210at 1666.044 kb on - strandat 1666.103 kb on + strandat 1666.210 kb on - strandat 1666.267 kb on + strandat 1666.302 kb on + strand, within CA264_07215at 1666.302 kb on + strand, within CA264_07215at 1666.437 kb on + strand, within CA264_07215at 1666.437 kb on + strand, within CA264_07215at 1666.438 kb on - strand, within CA264_07215at 1666.438 kb on - strand, within CA264_07215at 1666.508 kb on + strand, within CA264_07215at 1666.517 kb on + strand, within CA264_07215at 1666.544 kb on + strand, within CA264_07215at 1666.544 kb on + strand, within CA264_07215at 1666.545 kb on - strand, within CA264_07215at 1666.545 kb on - strand, within CA264_07215at 1666.545 kb on - strand, within CA264_07215at 1666.545 kb on - strand, within CA264_07215at 1666.545 kb on - strand, within CA264_07215at 1666.599 kb on + strand, within CA264_07215at 1666.614 kb on + strand, within CA264_07215at 1666.649 kb on + strand, within CA264_07215at 1666.649 kb on + strand, within CA264_07215at 1666.655 kb on + strand, within CA264_07215at 1666.655 kb on + strand, within CA264_07215at 1666.656 kb on - strand, within CA264_07215at 1666.745 kb on + strand, within CA264_07215at 1666.746 kb on - strand, within CA264_07215at 1666.746 kb on - strand, within CA264_07215at 1666.746 kb on - strand, within CA264_07215at 1666.746 kb on - strand, within CA264_07215at 1666.746 kb on - strand, within CA264_07215at 1666.748 kb on + strand, within CA264_07215at 1666.748 kb on + strand, within CA264_07215at 1666.749 kb on - strand, within CA264_07215at 1666.753 kb on + strand, within CA264_07215at 1666.791 kb on - strand, within CA264_07215at 1666.812 kb on + strand, within CA264_07215at 1666.836 kb on + strand, within CA264_07215at 1666.889 kb on + strand, within CA264_07215at 1666.889 kb on + strand, within CA264_07215at 1666.905 kb on + strand, within CA264_07215at 1666.905 kb on + strand, within CA264_07215at 1666.906 kb on - strand, within CA264_07215at 1666.937 kb on + strand, within CA264_07215at 1666.937 kb on + strand, within CA264_07215at 1666.938 kb on - strand, within CA264_07215at 1666.940 kb on + strand, within CA264_07215at 1666.941 kb on - strand, within CA264_07215at 1666.979 kb on + strand, within CA264_07215at 1666.980 kb on - strand, within CA264_07215at 1666.980 kb on - strand, within CA264_07215at 1666.995 kb on - strand, within CA264_07215at 1667.041 kb on + strand, within CA264_07215at 1667.051 kb on + strand, within CA264_07215at 1667.084 kb on + strand, within CA264_07215at 1667.085 kb on - strand, within CA264_07215at 1667.222 kb on - strand, within CA264_07215at 1667.289 kb on - strand, within CA264_07215at 1667.289 kb on - strand, within CA264_07215at 1667.292 kb on + strand, within CA264_07215at 1667.328 kb on + strand, within CA264_07215at 1667.328 kb on + strand, within CA264_07215at 1667.329 kb on - strand, within CA264_07215at 1667.329 kb on - strand, within CA264_07215at 1667.329 kb on - strand, within CA264_07215at 1667.330 kb on + strand, within CA264_07215at 1667.330 kb on + strand, within CA264_07215at 1667.331 kb on - strand, within CA264_07215at 1667.331 kb on - strand, within CA264_07215at 1667.331 kb on - strand, within CA264_07215at 1667.347 kb on + strand, within CA264_07215at 1667.378 kb on + strand, within CA264_07215at 1667.379 kb on - strand, within CA264_07215at 1667.393 kb on + strand, within CA264_07215at 1667.397 kb on + strand, within CA264_07215at 1667.404 kb on - strand, within CA264_07215at 1667.404 kb on - strand, within CA264_07215at 1667.448 kb on - strand, within CA264_07215at 1667.458 kb on + strand, within CA264_07215at 1667.459 kb on - strand, within CA264_07215at 1667.500 kb on - strand, within CA264_07215at 1667.511 kb on + strand, within CA264_07215at 1667.512 kb on - strand, within CA264_07215at 1667.523 kb on - strand, within CA264_07215at 1667.544 kb on - strand, within CA264_07215at 1667.551 kb on - strand, within CA264_07215at 1667.555 kb on - strand, within CA264_07215at 1667.555 kb on - strand, within CA264_07215at 1667.583 kb on - strand, within CA264_07215at 1667.613 kb on + strand, within CA264_07215at 1667.615 kb on + strand, within CA264_07215at 1667.616 kb on - strand, within CA264_07215at 1667.721 kb on - strandat 1667.737 kb on + strandat 1667.770 kb on - strandat 1667.792 kb on - strandat 1667.834 kb on + strandat 1667.890 kb on + strandat 1667.891 kb on - strandat 1667.893 kb on + strandat 1667.932 kb on + strandat 1667.932 kb on + strandat 1667.932 kb on + strandat 1667.997 kb on + strandat 1667.997 kb on + strandat 1667.997 kb on + strandat 1667.997 kb on + strandat 1667.999 kb on + strandat 1668.001 kb on + strandat 1668.001 kb on + strandat 1668.076 kb on + strand, within CA264_07220at 1668.114 kb on - strand, within CA264_07220at 1668.114 kb on - strand, within CA264_07220at 1668.146 kb on - strand, within CA264_07220at 1668.188 kb on + strand, within CA264_07220at 1668.188 kb on + strand, within CA264_07220at 1668.189 kb on - strand, within CA264_07220at 1668.262 kb on + strand, within CA264_07220at 1668.263 kb on - strand, within CA264_07220at 1668.346 kb on + strandat 1668.410 kb on + strandat 1668.411 kb on - strandat 1668.411 kb on - strandat 1668.437 kb on + strandat 1668.438 kb on - strandat 1668.528 kb on + strandat 1668.539 kb on + strandat 1668.566 kb on + strandat 1668.627 kb on + strandat 1668.649 kb on + strandat 1668.672 kb on + strandat 1668.673 kb on - strandat 1668.673 kb on - strandat 1668.673 kb on - strandat 1668.673 kb on - strandat 1668.709 kb on + strandat 1668.709 kb on + strandat 1668.709 kb on + strandat 1668.727 kb on - strandat 1668.731 kb on + strandat 1668.732 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.05 mM
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1,665,167 - -0.4
1,665,185 + +0.2
1,665,250 + +0.6
1,665,251 - -0.9
1,665,263 - -0.3
1,665,263 - +0.1
1,665,264 + +0.2
1,665,265 - -0.6
1,665,283 + +0.6
1,665,283 + -0.8
1,665,284 - +0.7
1,665,367 + -0.4
1,665,369 + +0.1
1,665,370 - -0.5
1,665,430 + CA264_07210 0.16 +0.1
1,665,459 + CA264_07210 0.19 -0.4
1,665,459 + CA264_07210 0.19 +1.5
1,665,459 + CA264_07210 0.19 -0.2
1,665,459 + CA264_07210 0.19 -0.0
1,665,460 - CA264_07210 0.20 -0.6
1,665,492 + CA264_07210 0.24 -0.5
1,665,525 - CA264_07210 0.29 -0.7
1,665,525 - CA264_07210 0.29 +0.7
1,665,551 - CA264_07210 0.32 -0.3
1,665,556 - CA264_07210 0.33 +0.7
1,665,556 - CA264_07210 0.33 -1.2
1,665,563 + CA264_07210 0.34 -0.3
1,665,564 - CA264_07210 0.34 -0.3
1,665,564 - CA264_07210 0.34 +0.1
1,665,597 + CA264_07210 0.38 -0.6
1,665,597 + CA264_07210 0.38 -0.4
1,665,630 - CA264_07210 0.43 -1.0
1,665,650 + CA264_07210 0.46 -0.2
1,665,675 - CA264_07210 0.49 +0.3
1,665,675 - CA264_07210 0.49 -0.6
1,665,699 + CA264_07210 0.52 -0.3
1,665,699 + CA264_07210 0.52 -1.1
1,665,723 + CA264_07210 0.56 -0.3
1,665,757 + CA264_07210 0.60 +1.2
1,665,773 - CA264_07210 0.63 +0.2
1,665,780 + CA264_07210 0.64 +0.1
1,665,781 - CA264_07210 0.64 -0.4
1,665,781 - CA264_07210 0.64 -0.4
1,665,797 + CA264_07210 0.66 +1.6
1,665,797 + CA264_07210 0.66 +0.1
1,665,798 - CA264_07210 0.66 -0.0
1,665,798 - CA264_07210 0.66 -0.7
1,665,800 + CA264_07210 0.66 -0.9
1,665,831 + CA264_07210 0.71 -0.9
1,666,044 - -0.0
1,666,103 + +0.6
1,666,210 - -1.3
1,666,267 + +0.7
1,666,302 + CA264_07215 0.11 -0.2
1,666,302 + CA264_07215 0.11 +0.8
1,666,437 + CA264_07215 0.19 +0.0
1,666,437 + CA264_07215 0.19 -0.3
1,666,438 - CA264_07215 0.19 +0.2
1,666,438 - CA264_07215 0.19 +0.7
1,666,508 + CA264_07215 0.23 +0.6
1,666,517 + CA264_07215 0.23 +0.8
1,666,544 + CA264_07215 0.25 -0.3
1,666,544 + CA264_07215 0.25 -1.1
1,666,545 - CA264_07215 0.25 +0.3
1,666,545 - CA264_07215 0.25 -0.2
1,666,545 - CA264_07215 0.25 -0.5
1,666,545 - CA264_07215 0.25 -0.1
1,666,545 - CA264_07215 0.25 +0.3
1,666,599 + CA264_07215 0.28 -0.5
1,666,614 + CA264_07215 0.29 +2.1
1,666,649 + CA264_07215 0.31 +0.4
1,666,649 + CA264_07215 0.31 +0.9
1,666,655 + CA264_07215 0.31 -0.3
1,666,655 + CA264_07215 0.31 -0.7
1,666,656 - CA264_07215 0.31 +0.8
1,666,745 + CA264_07215 0.37 +0.1
1,666,746 - CA264_07215 0.37 +0.1
1,666,746 - CA264_07215 0.37 -1.2
1,666,746 - CA264_07215 0.37 -0.0
1,666,746 - CA264_07215 0.37 +0.5
1,666,746 - CA264_07215 0.37 +0.2
1,666,748 + CA264_07215 0.37 +0.6
1,666,748 + CA264_07215 0.37 -0.0
1,666,749 - CA264_07215 0.37 +0.1
1,666,753 + CA264_07215 0.37 -0.4
1,666,791 - CA264_07215 0.39 -2.1
1,666,812 + CA264_07215 0.41 -0.3
1,666,836 + CA264_07215 0.42 -0.4
1,666,889 + CA264_07215 0.45 -0.1
1,666,889 + CA264_07215 0.45 +0.6
1,666,905 + CA264_07215 0.46 +0.6
1,666,905 + CA264_07215 0.46 +0.2
1,666,906 - CA264_07215 0.46 -0.3
1,666,937 + CA264_07215 0.48 +0.0
1,666,937 + CA264_07215 0.48 +0.2
1,666,938 - CA264_07215 0.48 -0.7
1,666,940 + CA264_07215 0.48 +0.7
1,666,941 - CA264_07215 0.48 -0.3
1,666,979 + CA264_07215 0.50 -0.2
1,666,980 - CA264_07215 0.50 -0.6
1,666,980 - CA264_07215 0.50 +0.3
1,666,995 - CA264_07215 0.51 +0.9
1,667,041 + CA264_07215 0.54 -0.8
1,667,051 + CA264_07215 0.55 -0.4
1,667,084 + CA264_07215 0.57 -1.6
1,667,085 - CA264_07215 0.57 -0.3
1,667,222 - CA264_07215 0.65 -0.8
1,667,289 - CA264_07215 0.69 +0.5
1,667,289 - CA264_07215 0.69 -0.5
1,667,292 + CA264_07215 0.69 -0.6
1,667,328 + CA264_07215 0.71 +0.2
1,667,328 + CA264_07215 0.71 -0.8
1,667,329 - CA264_07215 0.71 +0.1
1,667,329 - CA264_07215 0.71 -0.1
1,667,329 - CA264_07215 0.71 +0.3
1,667,330 + CA264_07215 0.71 -0.0
1,667,330 + CA264_07215 0.71 -0.3
1,667,331 - CA264_07215 0.71 -0.2
1,667,331 - CA264_07215 0.71 +0.8
1,667,331 - CA264_07215 0.71 +0.7
1,667,347 + CA264_07215 0.72 -0.4
1,667,378 + CA264_07215 0.74 -0.5
1,667,379 - CA264_07215 0.74 -0.9
1,667,393 + CA264_07215 0.75 +1.3
1,667,397 + CA264_07215 0.75 +0.9
1,667,404 - CA264_07215 0.75 +0.3
1,667,404 - CA264_07215 0.75 -0.1
1,667,448 - CA264_07215 0.78 +0.7
1,667,458 + CA264_07215 0.79 +1.5
1,667,459 - CA264_07215 0.79 -1.1
1,667,500 - CA264_07215 0.81 +0.3
1,667,511 + CA264_07215 0.82 -0.7
1,667,512 - CA264_07215 0.82 +0.2
1,667,523 - CA264_07215 0.82 -0.6
1,667,544 - CA264_07215 0.84 -0.8
1,667,551 - CA264_07215 0.84 +0.2
1,667,555 - CA264_07215 0.84 +0.3
1,667,555 - CA264_07215 0.84 +0.3
1,667,583 - CA264_07215 0.86 +0.4
1,667,613 + CA264_07215 0.88 +1.3
1,667,615 + CA264_07215 0.88 -0.3
1,667,616 - CA264_07215 0.88 -0.1
1,667,721 - +0.8
1,667,737 + -0.6
1,667,770 - +0.2
1,667,792 - -0.7
1,667,834 + +0.1
1,667,890 + +0.2
1,667,891 - -0.0
1,667,893 + +1.3
1,667,932 + +1.1
1,667,932 + -0.1
1,667,932 + +0.4
1,667,997 + +0.2
1,667,997 + -0.1
1,667,997 + +1.1
1,667,997 + -0.4
1,667,999 + +0.1
1,668,001 + +1.9
1,668,001 + -0.2
1,668,076 + CA264_07220 0.12 -0.7
1,668,114 - CA264_07220 0.21 -0.3
1,668,114 - CA264_07220 0.21 -0.2
1,668,146 - CA264_07220 0.29 -0.6
1,668,188 + CA264_07220 0.39 +0.7
1,668,188 + CA264_07220 0.39 +0.8
1,668,189 - CA264_07220 0.39 +0.3
1,668,262 + CA264_07220 0.56 +1.0
1,668,263 - CA264_07220 0.56 +0.6
1,668,346 + +0.3
1,668,410 + -0.3
1,668,411 - -0.8
1,668,411 - -0.1
1,668,437 + -0.4
1,668,438 - -0.3
1,668,528 + -0.2
1,668,539 + -0.1
1,668,566 + -0.6
1,668,627 + +1.0
1,668,649 + -0.3
1,668,672 + -0.4
1,668,673 - -1.0
1,668,673 - -0.1
1,668,673 - -0.6
1,668,673 - -0.4
1,668,709 + -0.0
1,668,709 + -0.1
1,668,709 + +0.1
1,668,727 - -0.1
1,668,731 + -0.0
1,668,732 - +0.5

Or see this region's nucleotide sequence