Experiment: m.b. Cobalt chloride 0.05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_05390 and CA264_05395 are separated by 330 nucleotides CA264_05395 and CA264_05400 are separated by 225 nucleotides CA264_05400 and CA264_05405 are separated by 186 nucleotides
CA264_05390: CA264_05390 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, at 1,251,730 to 1,253,703
_05390
CA264_05395: CA264_05395 - MmcQ-like protein, at 1,254,034 to 1,254,399
_05395
CA264_05400: CA264_05400 - MarR family transcriptional regulator, at 1,254,625 to 1,255,125
_05400
CA264_05405: CA264_05405 - leucine--tRNA ligase, at 1,255,312 to 1,258,080
_05405
Position (kb)
1254
1255 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1253.670 kb on + strand at 1253.702 kb on - strand at 1253.717 kb on - strand at 1253.737 kb on + strand at 1253.737 kb on + strand at 1253.738 kb on - strand at 1253.740 kb on + strand at 1253.767 kb on - strand at 1253.781 kb on + strand at 1253.782 kb on - strand at 1253.782 kb on - strand at 1253.791 kb on - strand at 1253.826 kb on - strand at 1253.840 kb on + strand at 1253.841 kb on - strand at 1253.846 kb on - strand at 1253.850 kb on + strand at 1253.850 kb on + strand at 1253.851 kb on - strand at 1253.851 kb on - strand at 1253.884 kb on + strand at 1253.892 kb on + strand at 1253.966 kb on - strand at 1254.018 kb on + strand at 1254.018 kb on + strand at 1254.018 kb on + strand at 1254.019 kb on - strand at 1254.039 kb on + strand at 1254.058 kb on + strand at 1254.058 kb on + strand at 1254.058 kb on + strand at 1254.108 kb on + strand, within CA264_05395 at 1254.120 kb on + strand, within CA264_05395 at 1254.120 kb on + strand, within CA264_05395 at 1254.121 kb on - strand, within CA264_05395 at 1254.125 kb on + strand, within CA264_05395 at 1254.125 kb on + strand, within CA264_05395 at 1254.453 kb on - strand at 1254.479 kb on + strand at 1254.484 kb on - strand at 1254.548 kb on - strand at 1254.558 kb on - strand at 1254.618 kb on + strand at 1254.698 kb on - strand, within CA264_05400 at 1254.725 kb on - strand, within CA264_05400 at 1254.748 kb on - strand, within CA264_05400 at 1254.767 kb on - strand, within CA264_05400 at 1254.786 kb on - strand, within CA264_05400 at 1254.880 kb on - strand, within CA264_05400 at 1254.894 kb on - strand, within CA264_05400 at 1254.896 kb on + strand, within CA264_05400 at 1254.896 kb on + strand, within CA264_05400 at 1254.897 kb on - strand, within CA264_05400 at 1254.897 kb on - strand, within CA264_05400 at 1254.965 kb on + strand, within CA264_05400 at 1254.966 kb on - strand, within CA264_05400 at 1255.131 kb on - strand at 1255.141 kb on + strand at 1255.142 kb on - strand at 1255.220 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.05 mM remove 1,253,670 + -0.8 1,253,702 - +0.4 1,253,717 - -0.2 1,253,737 + -0.1 1,253,737 + +0.1 1,253,738 - +0.5 1,253,740 + +0.3 1,253,767 - -0.3 1,253,781 + +0.1 1,253,782 - -0.8 1,253,782 - +2.9 1,253,791 - +0.1 1,253,826 - +0.7 1,253,840 + -0.9 1,253,841 - -1.9 1,253,846 - -0.5 1,253,850 + -0.3 1,253,850 + -0.6 1,253,851 - -0.1 1,253,851 - +0.1 1,253,884 + -0.5 1,253,892 + +0.2 1,253,966 - +0.2 1,254,018 + +0.2 1,254,018 + -0.6 1,254,018 + -0.7 1,254,019 - -0.1 1,254,039 + -0.0 1,254,058 + +0.3 1,254,058 + +0.4 1,254,058 + +1.0 1,254,108 + CA264_05395 0.20 -0.1 1,254,120 + CA264_05395 0.23 +0.0 1,254,120 + CA264_05395 0.23 -0.5 1,254,121 - CA264_05395 0.24 +1.5 1,254,125 + CA264_05395 0.25 -0.6 1,254,125 + CA264_05395 0.25 +0.2 1,254,453 - -0.1 1,254,479 + -0.1 1,254,484 - +0.1 1,254,548 - -0.6 1,254,558 - +0.4 1,254,618 + -0.2 1,254,698 - CA264_05400 0.15 -0.3 1,254,725 - CA264_05400 0.20 -1.5 1,254,748 - CA264_05400 0.25 -1.3 1,254,767 - CA264_05400 0.28 -1.0 1,254,786 - CA264_05400 0.32 +0.4 1,254,880 - CA264_05400 0.51 -0.1 1,254,894 - CA264_05400 0.54 -1.4 1,254,896 + CA264_05400 0.54 +0.8 1,254,896 + CA264_05400 0.54 -1.2 1,254,897 - CA264_05400 0.54 +1.0 1,254,897 - CA264_05400 0.54 -1.6 1,254,965 + CA264_05400 0.68 -1.2 1,254,966 - CA264_05400 0.68 -1.3 1,255,131 - +1.0 1,255,141 + -1.0 1,255,142 - -0.1 1,255,220 + +0.1
Or see this region's nucleotide sequence