Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00495

Experiment: m.b. Cobalt chloride 0.05 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00490 and CA264_00495 are separated by 287 nucleotidesCA264_00495 and CA264_00500 overlap by 101 nucleotides CA264_00490: CA264_00490 - TonB-dependent siderophore receptor, at 107,345 to 109,738 _00490 CA264_00495: CA264_00495 - hypothetical protein, at 110,026 to 111,225 _00495 CA264_00500: CA264_00500 - hypothetical protein, at 111,125 to 113,461 _00500 Position (kb) 110 111 112Strain fitness (log2 ratio) -1 0 1 2 3at 109.043 kb on - strand, within CA264_00490at 109.179 kb on + strand, within CA264_00490at 109.179 kb on + strand, within CA264_00490at 109.179 kb on + strand, within CA264_00490at 109.180 kb on - strand, within CA264_00490at 109.236 kb on - strand, within CA264_00490at 109.238 kb on + strand, within CA264_00490at 109.238 kb on + strand, within CA264_00490at 109.244 kb on - strand, within CA264_00490at 109.266 kb on - strand, within CA264_00490at 109.286 kb on + strand, within CA264_00490at 109.286 kb on + strand, within CA264_00490at 109.286 kb on + strand, within CA264_00490at 109.286 kb on + strand, within CA264_00490at 109.286 kb on + strand, within CA264_00490at 109.287 kb on - strand, within CA264_00490at 109.287 kb on - strand, within CA264_00490at 109.353 kb on + strand, within CA264_00490at 109.441 kb on + strand, within CA264_00490at 109.442 kb on - strand, within CA264_00490at 109.446 kb on - strand, within CA264_00490at 109.446 kb on - strand, within CA264_00490at 109.499 kb on - strandat 109.500 kb on + strandat 109.500 kb on + strandat 109.505 kb on - strandat 109.575 kb on - strandat 109.673 kb on + strandat 109.673 kb on + strandat 109.718 kb on + strandat 109.718 kb on + strandat 109.721 kb on + strandat 109.721 kb on + strandat 109.722 kb on - strandat 109.724 kb on - strandat 109.738 kb on + strandat 109.739 kb on - strandat 109.747 kb on + strandat 109.748 kb on - strandat 109.748 kb on - strandat 109.750 kb on + strandat 109.819 kb on + strandat 109.819 kb on + strandat 109.859 kb on + strandat 109.859 kb on + strandat 109.862 kb on + strandat 109.862 kb on + strandat 109.862 kb on + strandat 109.863 kb on - strandat 109.867 kb on - strandat 109.867 kb on - strandat 109.867 kb on - strandat 109.869 kb on - strandat 109.880 kb on + strandat 109.881 kb on - strandat 109.886 kb on + strandat 109.910 kb on - strandat 109.953 kb on + strandat 109.953 kb on + strandat 109.953 kb on + strandat 110.010 kb on + strandat 110.010 kb on + strandat 110.011 kb on - strandat 110.022 kb on + strandat 110.023 kb on - strandat 110.237 kb on + strand, within CA264_00495at 110.238 kb on - strand, within CA264_00495at 110.298 kb on - strand, within CA264_00495at 110.300 kb on + strand, within CA264_00495at 110.301 kb on - strand, within CA264_00495at 110.336 kb on - strand, within CA264_00495at 110.336 kb on - strand, within CA264_00495at 110.369 kb on + strand, within CA264_00495at 110.369 kb on + strand, within CA264_00495at 110.370 kb on - strand, within CA264_00495at 110.370 kb on - strand, within CA264_00495at 110.373 kb on + strand, within CA264_00495at 110.373 kb on + strand, within CA264_00495at 110.373 kb on + strand, within CA264_00495at 110.374 kb on - strand, within CA264_00495at 110.485 kb on + strand, within CA264_00495at 110.491 kb on - strand, within CA264_00495at 110.519 kb on - strand, within CA264_00495at 110.529 kb on + strand, within CA264_00495at 110.573 kb on + strand, within CA264_00495at 110.573 kb on + strand, within CA264_00495at 110.593 kb on - strand, within CA264_00495at 110.647 kb on + strand, within CA264_00495at 110.648 kb on - strand, within CA264_00495at 110.649 kb on + strand, within CA264_00495at 110.732 kb on + strand, within CA264_00495at 110.753 kb on + strand, within CA264_00495at 110.784 kb on + strand, within CA264_00495at 110.785 kb on - strand, within CA264_00495at 110.788 kb on + strand, within CA264_00495at 110.788 kb on + strand, within CA264_00495at 110.893 kb on - strand, within CA264_00495at 110.893 kb on - strand, within CA264_00495at 110.990 kb on + strand, within CA264_00495at 110.990 kb on + strand, within CA264_00495at 110.990 kb on + strand, within CA264_00495at 110.991 kb on - strand, within CA264_00495at 111.004 kb on + strand, within CA264_00495at 111.004 kb on + strand, within CA264_00495at 111.004 kb on + strand, within CA264_00495at 111.005 kb on - strand, within CA264_00495at 111.006 kb on + strand, within CA264_00495at 111.006 kb on + strand, within CA264_00495at 111.006 kb on + strand, within CA264_00495at 111.007 kb on - strand, within CA264_00495at 111.027 kb on + strand, within CA264_00495at 111.089 kb on - strand, within CA264_00495at 111.126 kb on + strandat 111.196 kb on - strandat 111.201 kb on + strandat 111.216 kb on + strandat 111.216 kb on + strandat 111.219 kb on + strandat 111.220 kb on - strandat 111.220 kb on - strandat 111.422 kb on + strand, within CA264_00500at 111.513 kb on - strand, within CA264_00500at 111.594 kb on - strand, within CA264_00500at 111.603 kb on - strand, within CA264_00500at 111.697 kb on + strand, within CA264_00500at 111.752 kb on - strand, within CA264_00500at 111.779 kb on - strand, within CA264_00500at 111.804 kb on + strand, within CA264_00500at 111.804 kb on + strand, within CA264_00500at 111.813 kb on - strand, within CA264_00500at 111.840 kb on + strand, within CA264_00500at 111.840 kb on + strand, within CA264_00500at 111.841 kb on - strand, within CA264_00500at 111.888 kb on - strand, within CA264_00500at 111.892 kb on + strand, within CA264_00500at 111.998 kb on - strand, within CA264_00500at 112.003 kb on - strand, within CA264_00500at 112.044 kb on - strand, within CA264_00500at 112.109 kb on + strand, within CA264_00500at 112.109 kb on + strand, within CA264_00500at 112.140 kb on + strand, within CA264_00500at 112.153 kb on - strand, within CA264_00500at 112.156 kb on + strand, within CA264_00500at 112.157 kb on - strand, within CA264_00500

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.05 mM
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109,043 - CA264_00490 0.71 +0.3
109,179 + CA264_00490 0.77 -0.1
109,179 + CA264_00490 0.77 +1.0
109,179 + CA264_00490 0.77 -0.8
109,180 - CA264_00490 0.77 -0.3
109,236 - CA264_00490 0.79 +1.5
109,238 + CA264_00490 0.79 -0.4
109,238 + CA264_00490 0.79 -0.1
109,244 - CA264_00490 0.79 +0.1
109,266 - CA264_00490 0.80 +0.5
109,286 + CA264_00490 0.81 -0.6
109,286 + CA264_00490 0.81 -0.0
109,286 + CA264_00490 0.81 +0.6
109,286 + CA264_00490 0.81 -0.2
109,286 + CA264_00490 0.81 -0.3
109,287 - CA264_00490 0.81 +0.6
109,287 - CA264_00490 0.81 -0.1
109,353 + CA264_00490 0.84 -0.4
109,441 + CA264_00490 0.88 -0.6
109,442 - CA264_00490 0.88 +1.0
109,446 - CA264_00490 0.88 -0.8
109,446 - CA264_00490 0.88 -0.1
109,499 - -0.6
109,500 + +0.4
109,500 + -0.9
109,505 - +0.7
109,575 - +0.7
109,673 + -0.1
109,673 + +0.4
109,718 + +0.0
109,718 + -0.0
109,721 + -0.5
109,721 + +0.5
109,722 - -0.4
109,724 - +1.6
109,738 + -0.5
109,739 - +0.8
109,747 + +0.6
109,748 - +0.3
109,748 - +2.2
109,750 + +0.1
109,819 + +0.2
109,819 + +0.0
109,859 + -0.5
109,859 + +0.2
109,862 + +0.0
109,862 + +0.4
109,862 + -0.8
109,863 - +0.3
109,867 - -1.3
109,867 - -0.0
109,867 - -0.1
109,869 - -0.2
109,880 + -0.3
109,881 - -0.4
109,886 + -0.2
109,910 - -0.3
109,953 + -0.1
109,953 + +0.0
109,953 + -0.1
110,010 + +0.1
110,010 + -0.5
110,011 - +1.2
110,022 + +0.3
110,023 - -0.3
110,237 + CA264_00495 0.18 +0.1
110,238 - CA264_00495 0.18 -0.4
110,298 - CA264_00495 0.23 -1.2
110,300 + CA264_00495 0.23 +0.2
110,301 - CA264_00495 0.23 -1.6
110,336 - CA264_00495 0.26 -1.2
110,336 - CA264_00495 0.26 -0.1
110,369 + CA264_00495 0.29 -0.9
110,369 + CA264_00495 0.29 -0.7
110,370 - CA264_00495 0.29 -0.6
110,370 - CA264_00495 0.29 +0.7
110,373 + CA264_00495 0.29 -1.6
110,373 + CA264_00495 0.29 +0.6
110,373 + CA264_00495 0.29 -0.6
110,374 - CA264_00495 0.29 -0.8
110,485 + CA264_00495 0.38 -0.7
110,491 - CA264_00495 0.39 +1.1
110,519 - CA264_00495 0.41 +0.1
110,529 + CA264_00495 0.42 +0.2
110,573 + CA264_00495 0.46 -0.5
110,573 + CA264_00495 0.46 +0.0
110,593 - CA264_00495 0.47 +0.2
110,647 + CA264_00495 0.52 -0.4
110,648 - CA264_00495 0.52 -1.2
110,649 + CA264_00495 0.52 -0.1
110,732 + CA264_00495 0.59 -1.0
110,753 + CA264_00495 0.61 +1.7
110,784 + CA264_00495 0.63 -0.6
110,785 - CA264_00495 0.63 -0.3
110,788 + CA264_00495 0.64 -0.4
110,788 + CA264_00495 0.64 -0.4
110,893 - CA264_00495 0.72 +0.5
110,893 - CA264_00495 0.72 -0.0
110,990 + CA264_00495 0.80 +0.3
110,990 + CA264_00495 0.80 +0.9
110,990 + CA264_00495 0.80 +0.5
110,991 - CA264_00495 0.80 -0.2
111,004 + CA264_00495 0.81 -0.1
111,004 + CA264_00495 0.81 -0.5
111,004 + CA264_00495 0.81 -0.9
111,005 - CA264_00495 0.82 -0.1
111,006 + CA264_00495 0.82 +1.0
111,006 + CA264_00495 0.82 -0.8
111,006 + CA264_00495 0.82 -0.2
111,007 - CA264_00495 0.82 +0.2
111,027 + CA264_00495 0.83 +0.4
111,089 - CA264_00495 0.89 -0.5
111,126 + +0.3
111,196 - -1.3
111,201 + -0.3
111,216 + +0.3
111,216 + +0.7
111,219 + -0.5
111,220 - +0.9
111,220 - +0.3
111,422 + CA264_00500 0.13 +1.0
111,513 - CA264_00500 0.17 +0.4
111,594 - CA264_00500 0.20 +1.1
111,603 - CA264_00500 0.20 +0.1
111,697 + CA264_00500 0.24 +1.6
111,752 - CA264_00500 0.27 +0.3
111,779 - CA264_00500 0.28 +0.4
111,804 + CA264_00500 0.29 +0.1
111,804 + CA264_00500 0.29 +0.1
111,813 - CA264_00500 0.29 +0.7
111,840 + CA264_00500 0.31 -0.2
111,840 + CA264_00500 0.31 +0.4
111,841 - CA264_00500 0.31 +0.4
111,888 - CA264_00500 0.33 -0.2
111,892 + CA264_00500 0.33 +0.5
111,998 - CA264_00500 0.37 -0.8
112,003 - CA264_00500 0.38 +0.6
112,044 - CA264_00500 0.39 +2.3
112,109 + CA264_00500 0.42 +1.7
112,109 + CA264_00500 0.42 -0.3
112,140 + CA264_00500 0.43 -0.2
112,153 - CA264_00500 0.44 +3.3
112,156 + CA264_00500 0.44 +1.2
112,157 - CA264_00500 0.44 +1.3

Or see this region's nucleotide sequence