Strain Fitness in Pseudomonas sp. S08-1 around OH686_21985

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_21975 and OH686_21980 are separated by 14 nucleotidesOH686_21980 and OH686_21985 are separated by 61 nucleotidesOH686_21985 and OH686_21990 are separated by 13 nucleotides OH686_21975: OH686_21975 - beta-N-acetylglucosaminidase , at 4,475,251 to 4,476,261 _21975 OH686_21980: OH686_21980 - methylthioadenosine phosphorylase, at 4,476,276 to 4,477,013 _21980 OH686_21985: OH686_21985 - hypothetical protein, at 4,477,075 to 4,477,599 _21985 OH686_21990: OH686_21990 - transcription-repair coupling factor, at 4,477,613 to 4,481,053 _21990 Position (kb) 4477 4478Strain fitness (log2 ratio) -2 -1 0 1 2at 4476.264 kb on + strandat 4476.264 kb on + strandat 4476.264 kb on + strandat 4476.265 kb on - strandat 4476.265 kb on - strandat 4476.285 kb on + strandat 4476.285 kb on + strandat 4476.285 kb on + strandat 4476.285 kb on + strandat 4476.285 kb on + strandat 4476.285 kb on + strandat 4476.285 kb on + strandat 4476.286 kb on - strandat 4476.286 kb on - strandat 4476.286 kb on - strandat 4476.286 kb on - strandat 4476.286 kb on - strandat 4476.286 kb on - strandat 4476.286 kb on - strandat 4476.286 kb on - strandat 4476.334 kb on + strandat 4476.334 kb on + strandat 4476.334 kb on + strandat 4476.363 kb on + strand, within OH686_21980at 4476.363 kb on + strand, within OH686_21980at 4476.399 kb on + strand, within OH686_21980at 4476.400 kb on - strand, within OH686_21980at 4476.471 kb on + strand, within OH686_21980at 4476.471 kb on + strand, within OH686_21980at 4476.472 kb on - strand, within OH686_21980at 4476.472 kb on - strand, within OH686_21980at 4476.597 kb on + strand, within OH686_21980at 4476.597 kb on + strand, within OH686_21980at 4476.597 kb on + strand, within OH686_21980at 4476.597 kb on + strand, within OH686_21980at 4476.597 kb on + strand, within OH686_21980at 4476.597 kb on + strand, within OH686_21980at 4476.597 kb on + strand, within OH686_21980at 4476.597 kb on + strand, within OH686_21980at 4476.598 kb on - strand, within OH686_21980at 4476.598 kb on - strand, within OH686_21980at 4476.666 kb on + strand, within OH686_21980at 4476.666 kb on + strand, within OH686_21980at 4476.667 kb on - strand, within OH686_21980at 4476.747 kb on + strand, within OH686_21980at 4476.877 kb on - strand, within OH686_21980at 4476.979 kb on + strandat 4476.980 kb on - strandat 4476.980 kb on - strandat 4476.980 kb on - strandat 4476.980 kb on - strandat 4477.099 kb on + strandat 4477.124 kb on + strandat 4477.124 kb on + strandat 4477.124 kb on + strandat 4477.125 kb on - strandat 4477.371 kb on - strand, within OH686_21985at 4477.657 kb on + strandat 4477.725 kb on + strandat 4477.725 kb on + strandat 4477.725 kb on + strandat 4477.725 kb on + strandat 4477.977 kb on + strand, within OH686_21990at 4477.978 kb on - strand, within OH686_21990at 4477.978 kb on - strand, within OH686_21990at 4477.978 kb on - strand, within OH686_21990at 4478.010 kb on + strand, within OH686_21990at 4478.011 kb on - strand, within OH686_21990at 4478.011 kb on - strand, within OH686_21990at 4478.133 kb on + strand, within OH686_21990at 4478.133 kb on + strand, within OH686_21990at 4478.133 kb on + strand, within OH686_21990at 4478.133 kb on + strand, within OH686_21990at 4478.133 kb on + strand, within OH686_21990at 4478.133 kb on + strand, within OH686_21990at 4478.133 kb on + strand, within OH686_21990at 4478.133 kb on + strand, within OH686_21990at 4478.133 kb on + strand, within OH686_21990at 4478.134 kb on - strand, within OH686_21990at 4478.134 kb on - strand, within OH686_21990at 4478.134 kb on - strand, within OH686_21990at 4478.134 kb on - strand, within OH686_21990at 4478.134 kb on - strand, within OH686_21990at 4478.134 kb on - strand, within OH686_21990at 4478.319 kb on + strand, within OH686_21990at 4478.319 kb on + strand, within OH686_21990at 4478.320 kb on - strand, within OH686_21990at 4478.320 kb on - strand, within OH686_21990at 4478.325 kb on + strand, within OH686_21990at 4478.484 kb on + strand, within OH686_21990at 4478.484 kb on + strand, within OH686_21990at 4478.484 kb on + strand, within OH686_21990at 4478.484 kb on + strand, within OH686_21990at 4478.485 kb on - strand, within OH686_21990at 4478.485 kb on - strand, within OH686_21990

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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4,476,264 + -0.2
4,476,264 + -0.2
4,476,264 + -0.4
4,476,265 - +0.1
4,476,265 - -0.2
4,476,285 + -0.2
4,476,285 + +0.6
4,476,285 + +0.2
4,476,285 + -0.8
4,476,285 + -0.6
4,476,285 + +0.7
4,476,285 + -0.1
4,476,286 - +0.8
4,476,286 - +0.3
4,476,286 - -0.3
4,476,286 - +1.4
4,476,286 - -0.8
4,476,286 - -1.5
4,476,286 - +0.3
4,476,286 - +0.4
4,476,334 + +0.7
4,476,334 + -0.0
4,476,334 + -0.0
4,476,363 + OH686_21980 0.12 -1.8
4,476,363 + OH686_21980 0.12 -1.8
4,476,399 + OH686_21980 0.17 -0.4
4,476,400 - OH686_21980 0.17 +1.1
4,476,471 + OH686_21980 0.26 +0.2
4,476,471 + OH686_21980 0.26 +0.2
4,476,472 - OH686_21980 0.27 -1.0
4,476,472 - OH686_21980 0.27 +0.8
4,476,597 + OH686_21980 0.43 -0.1
4,476,597 + OH686_21980 0.43 -1.7
4,476,597 + OH686_21980 0.43 -0.8
4,476,597 + OH686_21980 0.43 -0.5
4,476,597 + OH686_21980 0.43 -0.7
4,476,597 + OH686_21980 0.43 +2.0
4,476,597 + OH686_21980 0.43 +0.0
4,476,597 + OH686_21980 0.43 -1.8
4,476,598 - OH686_21980 0.44 -0.2
4,476,598 - OH686_21980 0.44 -0.8
4,476,666 + OH686_21980 0.53 -0.9
4,476,666 + OH686_21980 0.53 -1.4
4,476,667 - OH686_21980 0.53 -1.2
4,476,747 + OH686_21980 0.64 +1.4
4,476,877 - OH686_21980 0.81 -0.7
4,476,979 + -0.2
4,476,980 - +1.0
4,476,980 - -1.1
4,476,980 - -1.2
4,476,980 - +0.0
4,477,099 + +1.2
4,477,124 + +0.1
4,477,124 + -0.1
4,477,124 + -0.4
4,477,125 - -0.9
4,477,371 - OH686_21985 0.56 -0.2
4,477,657 + -1.1
4,477,725 + -0.7
4,477,725 + -1.3
4,477,725 + -2.4
4,477,725 + -0.4
4,477,977 + OH686_21990 0.11 -0.4
4,477,978 - OH686_21990 0.11 +0.4
4,477,978 - OH686_21990 0.11 -0.9
4,477,978 - OH686_21990 0.11 -0.7
4,478,010 + OH686_21990 0.12 +0.4
4,478,011 - OH686_21990 0.12 -0.0
4,478,011 - OH686_21990 0.12 +1.1
4,478,133 + OH686_21990 0.15 -1.4
4,478,133 + OH686_21990 0.15 -0.6
4,478,133 + OH686_21990 0.15 -0.6
4,478,133 + OH686_21990 0.15 +0.8
4,478,133 + OH686_21990 0.15 +0.6
4,478,133 + OH686_21990 0.15 +0.1
4,478,133 + OH686_21990 0.15 -1.6
4,478,133 + OH686_21990 0.15 +0.3
4,478,133 + OH686_21990 0.15 +0.1
4,478,134 - OH686_21990 0.15 +1.6
4,478,134 - OH686_21990 0.15 -2.0
4,478,134 - OH686_21990 0.15 -0.9
4,478,134 - OH686_21990 0.15 -1.8
4,478,134 - OH686_21990 0.15 +1.0
4,478,134 - OH686_21990 0.15 -1.9
4,478,319 + OH686_21990 0.21 -1.3
4,478,319 + OH686_21990 0.21 +0.2
4,478,320 - OH686_21990 0.21 +0.4
4,478,320 - OH686_21990 0.21 +1.1
4,478,325 + OH686_21990 0.21 +0.1
4,478,484 + OH686_21990 0.25 +0.2
4,478,484 + OH686_21990 0.25 +0.7
4,478,484 + OH686_21990 0.25 -0.5
4,478,484 + OH686_21990 0.25 -0.7
4,478,485 - OH686_21990 0.25 +0.0
4,478,485 - OH686_21990 0.25 +0.0

Or see this region's nucleotide sequence