Strain Fitness in Pseudomonas sp. S08-1 around OH686_04410

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_04400 and OH686_04405 are separated by 273 nucleotidesOH686_04405 and OH686_04410 are separated by 5 nucleotidesOH686_04410 and OH686_04415 are separated by 46 nucleotides OH686_04400: OH686_04400 - hypothetical protein, at 912,661 to 915,294 _04400 OH686_04405: OH686_04405 - hypothetical protein, at 915,568 to 916,212 _04405 OH686_04410: OH686_04410 - type II secretion system protein D, at 916,218 to 918,179 _04410 OH686_04415: OH686_04415 - O-succinylhomoserine sulfhydrylase, at 918,226 to 919,437 _04415 Position (kb) 916 917 918 919Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 915.314 kb on + strandat 915.315 kb on - strandat 915.315 kb on - strandat 915.320 kb on + strandat 915.320 kb on + strandat 915.320 kb on + strandat 915.321 kb on - strandat 915.321 kb on - strandat 915.354 kb on + strandat 915.439 kb on + strandat 915.439 kb on + strandat 915.439 kb on + strandat 915.439 kb on + strandat 915.440 kb on - strandat 915.440 kb on - strandat 915.440 kb on - strandat 915.440 kb on - strandat 915.468 kb on + strandat 915.468 kb on + strandat 915.468 kb on + strandat 915.468 kb on + strandat 915.469 kb on - strandat 915.469 kb on - strandat 915.469 kb on - strandat 915.469 kb on - strandat 915.469 kb on - strandat 915.469 kb on - strandat 915.469 kb on - strandat 915.500 kb on + strandat 915.500 kb on + strandat 915.541 kb on + strandat 915.541 kb on + strandat 915.542 kb on - strandat 915.542 kb on - strandat 915.542 kb on - strandat 916.051 kb on + strand, within OH686_04405at 916.066 kb on + strand, within OH686_04405at 916.211 kb on - strandat 916.211 kb on - strandat 916.211 kb on - strandat 916.494 kb on + strand, within OH686_04410at 916.494 kb on + strand, within OH686_04410at 916.494 kb on + strand, within OH686_04410at 916.495 kb on - strand, within OH686_04410at 916.495 kb on - strand, within OH686_04410at 916.495 kb on - strand, within OH686_04410at 916.711 kb on + strand, within OH686_04410at 916.711 kb on + strand, within OH686_04410at 916.711 kb on + strand, within OH686_04410at 916.712 kb on - strand, within OH686_04410at 916.712 kb on - strand, within OH686_04410at 916.818 kb on + strand, within OH686_04410at 916.818 kb on + strand, within OH686_04410at 916.819 kb on - strand, within OH686_04410at 917.257 kb on + strand, within OH686_04410at 917.257 kb on + strand, within OH686_04410at 917.573 kb on + strand, within OH686_04410at 917.628 kb on + strand, within OH686_04410at 917.628 kb on + strand, within OH686_04410at 917.628 kb on + strand, within OH686_04410at 917.628 kb on + strand, within OH686_04410at 917.628 kb on + strand, within OH686_04410at 917.628 kb on + strand, within OH686_04410at 917.629 kb on - strand, within OH686_04410at 917.629 kb on - strand, within OH686_04410at 917.629 kb on - strand, within OH686_04410at 917.629 kb on - strand, within OH686_04410at 917.629 kb on - strand, within OH686_04410at 917.629 kb on - strand, within OH686_04410at 917.629 kb on - strand, within OH686_04410at 917.734 kb on + strand, within OH686_04410at 917.735 kb on - strand, within OH686_04410at 917.735 kb on - strand, within OH686_04410at 917.735 kb on - strand, within OH686_04410at 917.735 kb on - strand, within OH686_04410at 917.914 kb on + strand, within OH686_04410at 917.915 kb on - strand, within OH686_04410at 918.057 kb on + strandat 918.057 kb on + strandat 918.057 kb on + strandat 918.066 kb on - strandat 918.177 kb on + strandat 918.178 kb on - strandat 918.178 kb on - strandat 918.548 kb on + strand, within OH686_04415at 918.548 kb on + strand, within OH686_04415at 918.548 kb on + strand, within OH686_04415at 918.549 kb on - strand, within OH686_04415at 918.551 kb on + strand, within OH686_04415at 918.551 kb on + strand, within OH686_04415at 918.551 kb on + strand, within OH686_04415at 918.552 kb on - strand, within OH686_04415at 918.552 kb on - strand, within OH686_04415at 918.552 kb on - strand, within OH686_04415at 918.552 kb on - strand, within OH686_04415at 918.552 kb on - strand, within OH686_04415at 918.552 kb on - strand, within OH686_04415at 918.779 kb on + strand, within OH686_04415at 918.779 kb on + strand, within OH686_04415at 918.779 kb on + strand, within OH686_04415at 918.779 kb on + strand, within OH686_04415at 918.779 kb on + strand, within OH686_04415at 918.780 kb on - strand, within OH686_04415at 918.780 kb on - strand, within OH686_04415at 918.780 kb on - strand, within OH686_04415at 918.780 kb on - strand, within OH686_04415at 918.780 kb on - strand, within OH686_04415at 918.780 kb on - strand, within OH686_04415at 919.013 kb on + strand, within OH686_04415at 919.044 kb on - strand, within OH686_04415

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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915,314 + -1.9
915,315 - +0.0
915,315 - -0.3
915,320 + -1.6
915,320 + -0.4
915,320 + -0.4
915,321 - -0.7
915,321 - -0.2
915,354 + -1.2
915,439 + -0.9
915,439 + -0.6
915,439 + -1.2
915,439 + -0.5
915,440 - +0.2
915,440 - +1.1
915,440 - +0.9
915,440 - +2.3
915,468 + -0.4
915,468 + +0.5
915,468 + +0.8
915,468 + -0.9
915,469 - +0.8
915,469 - -1.0
915,469 - -0.4
915,469 - +0.4
915,469 - +0.2
915,469 - +0.6
915,469 - -1.2
915,500 + +0.3
915,500 + -1.1
915,541 + -1.4
915,541 + +0.4
915,542 - -1.1
915,542 - -1.9
915,542 - +1.0
916,051 + OH686_04405 0.75 +0.0
916,066 + OH686_04405 0.77 +0.2
916,211 - +0.3
916,211 - -1.1
916,211 - -1.4
916,494 + OH686_04410 0.14 +0.1
916,494 + OH686_04410 0.14 -0.4
916,494 + OH686_04410 0.14 -0.6
916,495 - OH686_04410 0.14 +0.5
916,495 - OH686_04410 0.14 +0.1
916,495 - OH686_04410 0.14 -0.9
916,711 + OH686_04410 0.25 -0.0
916,711 + OH686_04410 0.25 -0.5
916,711 + OH686_04410 0.25 +0.1
916,712 - OH686_04410 0.25 -0.5
916,712 - OH686_04410 0.25 +2.4
916,818 + OH686_04410 0.31 -1.0
916,818 + OH686_04410 0.31 +0.1
916,819 - OH686_04410 0.31 +0.4
917,257 + OH686_04410 0.53 +0.6
917,257 + OH686_04410 0.53 +0.1
917,573 + OH686_04410 0.69 -0.1
917,628 + OH686_04410 0.72 -1.2
917,628 + OH686_04410 0.72 +0.8
917,628 + OH686_04410 0.72 +1.0
917,628 + OH686_04410 0.72 -1.5
917,628 + OH686_04410 0.72 -0.1
917,628 + OH686_04410 0.72 +3.2
917,629 - OH686_04410 0.72 -1.8
917,629 - OH686_04410 0.72 -1.8
917,629 - OH686_04410 0.72 +0.2
917,629 - OH686_04410 0.72 -0.4
917,629 - OH686_04410 0.72 -1.8
917,629 - OH686_04410 0.72 +0.7
917,629 - OH686_04410 0.72 +1.1
917,734 + OH686_04410 0.77 -0.1
917,735 - OH686_04410 0.77 -2.7
917,735 - OH686_04410 0.77 -0.3
917,735 - OH686_04410 0.77 -0.7
917,735 - OH686_04410 0.77 +0.4
917,914 + OH686_04410 0.86 +0.0
917,915 - OH686_04410 0.86 -1.1
918,057 + +0.0
918,057 + -1.5
918,057 + -1.0
918,066 - -0.3
918,177 + +0.1
918,178 - +0.9
918,178 - -0.7
918,548 + OH686_04415 0.27 -2.4
918,548 + OH686_04415 0.27 -3.1
918,548 + OH686_04415 0.27 -1.2
918,549 - OH686_04415 0.27 +1.0
918,551 + OH686_04415 0.27 -1.8
918,551 + OH686_04415 0.27 -1.4
918,551 + OH686_04415 0.27 -3.1
918,552 - OH686_04415 0.27 -1.1
918,552 - OH686_04415 0.27 -2.3
918,552 - OH686_04415 0.27 -1.9
918,552 - OH686_04415 0.27 -0.7
918,552 - OH686_04415 0.27 -1.7
918,552 - OH686_04415 0.27 +0.4
918,779 + OH686_04415 0.46 -2.0
918,779 + OH686_04415 0.46 -1.7
918,779 + OH686_04415 0.46 -2.3
918,779 + OH686_04415 0.46 -2.8
918,779 + OH686_04415 0.46 -1.0
918,780 - OH686_04415 0.46 -0.9
918,780 - OH686_04415 0.46 -2.3
918,780 - OH686_04415 0.46 -1.5
918,780 - OH686_04415 0.46 -0.4
918,780 - OH686_04415 0.46 +0.2
918,780 - OH686_04415 0.46 -1.3
919,013 + OH686_04415 0.65 -1.7
919,044 - OH686_04415 0.67 +0.4

Or see this region's nucleotide sequence