Strain Fitness in Pseudomonas sp. S08-1 around OH686_01325

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_01315 and OH686_01320 are separated by 45 nucleotidesOH686_01320 and OH686_01325 overlap by 4 nucleotidesOH686_01325 and OH686_01330 overlap by 4 nucleotides OH686_01315: OH686_01315 - ase-related protein, at 298,523 to 299,833 _01315 OH686_01320: OH686_01320 - hypothetical protein, at 299,879 to 300,778 _01320 OH686_01325: OH686_01325 - Endonuclease/exonuclease/phosphatase family protein, at 300,775 to 301,557 _01325 OH686_01330: OH686_01330 - Cardiolipin synthase bacterial type ClsB, has minor trans-phosphatidylation activity converting PE to PG, at 301,554 to 302,765 _01330 Position (kb) 300 301 302Strain fitness (log2 ratio) -2 -1 0 1 2at 299.887 kb on + strandat 299.916 kb on - strandat 299.939 kb on + strandat 300.020 kb on + strand, within OH686_01320at 300.021 kb on - strand, within OH686_01320at 300.021 kb on - strand, within OH686_01320at 300.021 kb on - strand, within OH686_01320at 300.021 kb on - strand, within OH686_01320at 300.056 kb on + strand, within OH686_01320at 300.056 kb on + strand, within OH686_01320at 300.057 kb on - strand, within OH686_01320at 300.104 kb on + strand, within OH686_01320at 300.105 kb on - strand, within OH686_01320at 300.105 kb on - strand, within OH686_01320at 300.105 kb on - strand, within OH686_01320at 300.105 kb on - strand, within OH686_01320at 300.335 kb on + strand, within OH686_01320at 300.335 kb on + strand, within OH686_01320at 300.336 kb on - strand, within OH686_01320at 300.336 kb on - strand, within OH686_01320at 300.476 kb on + strand, within OH686_01320at 300.476 kb on + strand, within OH686_01320at 300.476 kb on + strand, within OH686_01320at 300.476 kb on + strand, within OH686_01320at 300.476 kb on + strand, within OH686_01320at 300.477 kb on - strand, within OH686_01320at 300.477 kb on - strand, within OH686_01320at 300.477 kb on - strand, within OH686_01320at 300.477 kb on - strand, within OH686_01320at 300.477 kb on - strand, within OH686_01320at 300.477 kb on - strand, within OH686_01320at 300.477 kb on - strand, within OH686_01320at 300.506 kb on + strand, within OH686_01320at 300.506 kb on + strand, within OH686_01320at 300.506 kb on + strand, within OH686_01320at 300.506 kb on + strand, within OH686_01320at 300.506 kb on + strand, within OH686_01320at 300.506 kb on + strand, within OH686_01320at 300.506 kb on + strand, within OH686_01320at 300.507 kb on - strand, within OH686_01320at 300.507 kb on - strand, within OH686_01320at 300.507 kb on - strand, within OH686_01320at 300.536 kb on + strand, within OH686_01320at 300.537 kb on - strand, within OH686_01320at 300.671 kb on + strand, within OH686_01320at 300.671 kb on + strand, within OH686_01320at 300.671 kb on + strand, within OH686_01320at 300.671 kb on + strand, within OH686_01320at 300.671 kb on + strand, within OH686_01320at 300.672 kb on - strand, within OH686_01320at 300.672 kb on - strand, within OH686_01320at 300.677 kb on + strand, within OH686_01320at 300.677 kb on + strand, within OH686_01320at 300.678 kb on - strand, within OH686_01320at 300.710 kb on + strandat 300.775 kb on - strandat 300.849 kb on + strandat 300.849 kb on + strandat 300.935 kb on + strand, within OH686_01325at 301.009 kb on + strand, within OH686_01325at 301.010 kb on - strand, within OH686_01325at 301.010 kb on - strand, within OH686_01325at 301.136 kb on + strand, within OH686_01325at 301.136 kb on + strand, within OH686_01325at 301.136 kb on + strand, within OH686_01325at 301.136 kb on + strand, within OH686_01325at 301.137 kb on - strand, within OH686_01325at 301.137 kb on - strand, within OH686_01325at 301.137 kb on - strand, within OH686_01325at 301.137 kb on - strand, within OH686_01325at 301.137 kb on - strand, within OH686_01325at 301.137 kb on - strand, within OH686_01325at 301.310 kb on + strand, within OH686_01325at 301.310 kb on + strand, within OH686_01325at 301.311 kb on - strand, within OH686_01325at 301.456 kb on + strand, within OH686_01325at 301.456 kb on + strand, within OH686_01325at 301.456 kb on + strand, within OH686_01325at 301.456 kb on + strand, within OH686_01325at 301.456 kb on + strand, within OH686_01325at 301.456 kb on + strand, within OH686_01325at 301.456 kb on + strand, within OH686_01325at 301.456 kb on + strand, within OH686_01325at 301.457 kb on - strand, within OH686_01325at 301.457 kb on - strand, within OH686_01325at 301.457 kb on - strand, within OH686_01325at 301.457 kb on - strand, within OH686_01325at 301.457 kb on - strand, within OH686_01325at 301.457 kb on - strand, within OH686_01325at 301.457 kb on - strand, within OH686_01325at 301.457 kb on - strand, within OH686_01325at 301.457 kb on - strand, within OH686_01325at 301.457 kb on - strand, within OH686_01325at 301.553 kb on + strandat 301.553 kb on + strandat 301.553 kb on + strandat 301.553 kb on + strandat 301.554 kb on - strandat 301.554 kb on - strandat 301.554 kb on - strandat 301.560 kb on + strandat 301.560 kb on + strandat 301.560 kb on + strandat 301.560 kb on + strandat 301.560 kb on + strandat 301.560 kb on + strandat 301.561 kb on - strandat 301.561 kb on - strandat 301.561 kb on - strandat 301.561 kb on - strandat 301.577 kb on + strandat 301.577 kb on + strandat 301.578 kb on - strandat 301.611 kb on + strandat 301.611 kb on + strandat 301.612 kb on - strandat 301.612 kb on - strandat 301.612 kb on - strandat 301.612 kb on - strandat 301.612 kb on - strandat 301.612 kb on - strandat 301.612 kb on - strandat 301.612 kb on - strandat 301.612 kb on - strandat 301.612 kb on - strandat 301.657 kb on + strandat 301.657 kb on + strandat 301.657 kb on + strandat 301.658 kb on - strandat 301.658 kb on - strandat 301.742 kb on - strand, within OH686_01330at 301.944 kb on + strand, within OH686_01330at 301.944 kb on + strand, within OH686_01330at 301.944 kb on + strand, within OH686_01330at 301.944 kb on + strand, within OH686_01330at 301.944 kb on + strand, within OH686_01330at 301.945 kb on - strand, within OH686_01330at 301.945 kb on - strand, within OH686_01330at 301.945 kb on - strand, within OH686_01330at 301.945 kb on - strand, within OH686_01330at 301.945 kb on - strand, within OH686_01330at 301.945 kb on - strand, within OH686_01330at 302.172 kb on + strand, within OH686_01330at 302.173 kb on - strand, within OH686_01330at 302.200 kb on - strand, within OH686_01330at 302.224 kb on - strand, within OH686_01330at 302.224 kb on - strand, within OH686_01330at 302.349 kb on + strand, within OH686_01330at 302.349 kb on + strand, within OH686_01330at 302.349 kb on + strand, within OH686_01330at 302.349 kb on + strand, within OH686_01330at 302.349 kb on + strand, within OH686_01330at 302.350 kb on - strand, within OH686_01330at 302.350 kb on - strand, within OH686_01330at 302.350 kb on - strand, within OH686_01330at 302.355 kb on + strand, within OH686_01330at 302.355 kb on + strand, within OH686_01330at 302.355 kb on + strand, within OH686_01330at 302.355 kb on + strand, within OH686_01330at 302.355 kb on + strand, within OH686_01330at 302.355 kb on + strand, within OH686_01330at 302.355 kb on + strand, within OH686_01330at 302.356 kb on - strand, within OH686_01330at 302.356 kb on - strand, within OH686_01330at 302.356 kb on - strand, within OH686_01330at 302.356 kb on - strand, within OH686_01330at 302.356 kb on - strand, within OH686_01330at 302.356 kb on - strand, within OH686_01330at 302.388 kb on + strand, within OH686_01330at 302.388 kb on + strand, within OH686_01330at 302.388 kb on + strand, within OH686_01330at 302.389 kb on - strand, within OH686_01330at 302.536 kb on - strand, within OH686_01330at 302.536 kb on - strand, within OH686_01330at 302.536 kb on - strand, within OH686_01330

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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299,887 + -0.1
299,916 - -0.1
299,939 + +0.1
300,020 + OH686_01320 0.16 -0.0
300,021 - OH686_01320 0.16 +1.1
300,021 - OH686_01320 0.16 -1.2
300,021 - OH686_01320 0.16 +0.1
300,021 - OH686_01320 0.16 -1.0
300,056 + OH686_01320 0.20 -0.9
300,056 + OH686_01320 0.20 -0.5
300,057 - OH686_01320 0.20 -0.4
300,104 + OH686_01320 0.25 +1.0
300,105 - OH686_01320 0.25 +1.6
300,105 - OH686_01320 0.25 -0.2
300,105 - OH686_01320 0.25 +0.6
300,105 - OH686_01320 0.25 -0.7
300,335 + OH686_01320 0.51 -1.6
300,335 + OH686_01320 0.51 -1.0
300,336 - OH686_01320 0.51 +0.7
300,336 - OH686_01320 0.51 -0.4
300,476 + OH686_01320 0.66 -0.1
300,476 + OH686_01320 0.66 +1.4
300,476 + OH686_01320 0.66 -1.1
300,476 + OH686_01320 0.66 +0.9
300,476 + OH686_01320 0.66 +0.7
300,477 - OH686_01320 0.66 -0.9
300,477 - OH686_01320 0.66 +0.1
300,477 - OH686_01320 0.66 +0.4
300,477 - OH686_01320 0.66 -1.3
300,477 - OH686_01320 0.66 +2.1
300,477 - OH686_01320 0.66 -0.6
300,477 - OH686_01320 0.66 -0.3
300,506 + OH686_01320 0.70 +0.9
300,506 + OH686_01320 0.70 +0.1
300,506 + OH686_01320 0.70 +0.2
300,506 + OH686_01320 0.70 +0.8
300,506 + OH686_01320 0.70 -0.0
300,506 + OH686_01320 0.70 -0.7
300,506 + OH686_01320 0.70 -0.0
300,507 - OH686_01320 0.70 +1.1
300,507 - OH686_01320 0.70 -0.5
300,507 - OH686_01320 0.70 +1.4
300,536 + OH686_01320 0.73 -0.0
300,537 - OH686_01320 0.73 -1.0
300,671 + OH686_01320 0.88 +0.7
300,671 + OH686_01320 0.88 -1.4
300,671 + OH686_01320 0.88 -0.2
300,671 + OH686_01320 0.88 +0.8
300,671 + OH686_01320 0.88 -1.6
300,672 - OH686_01320 0.88 +0.8
300,672 - OH686_01320 0.88 -2.4
300,677 + OH686_01320 0.89 +0.3
300,677 + OH686_01320 0.89 +1.1
300,678 - OH686_01320 0.89 -1.3
300,710 + +1.7
300,775 - -0.9
300,849 + -0.4
300,849 + -1.3
300,935 + OH686_01325 0.20 +0.6
301,009 + OH686_01325 0.30 +0.1
301,010 - OH686_01325 0.30 +0.8
301,010 - OH686_01325 0.30 -0.4
301,136 + OH686_01325 0.46 +1.1
301,136 + OH686_01325 0.46 +0.4
301,136 + OH686_01325 0.46 -0.0
301,136 + OH686_01325 0.46 -0.5
301,137 - OH686_01325 0.46 +0.3
301,137 - OH686_01325 0.46 +0.2
301,137 - OH686_01325 0.46 -0.1
301,137 - OH686_01325 0.46 +0.6
301,137 - OH686_01325 0.46 -1.8
301,137 - OH686_01325 0.46 -0.6
301,310 + OH686_01325 0.68 +0.3
301,310 + OH686_01325 0.68 +0.8
301,311 - OH686_01325 0.68 -1.3
301,456 + OH686_01325 0.87 -0.7
301,456 + OH686_01325 0.87 -1.9
301,456 + OH686_01325 0.87 +0.1
301,456 + OH686_01325 0.87 -2.1
301,456 + OH686_01325 0.87 -1.4
301,456 + OH686_01325 0.87 -0.8
301,456 + OH686_01325 0.87 -0.5
301,456 + OH686_01325 0.87 -0.8
301,457 - OH686_01325 0.87 +1.5
301,457 - OH686_01325 0.87 -1.1
301,457 - OH686_01325 0.87 +0.6
301,457 - OH686_01325 0.87 -1.4
301,457 - OH686_01325 0.87 +0.6
301,457 - OH686_01325 0.87 -0.5
301,457 - OH686_01325 0.87 -0.8
301,457 - OH686_01325 0.87 -0.8
301,457 - OH686_01325 0.87 +0.0
301,457 - OH686_01325 0.87 +0.4
301,553 + +0.5
301,553 + +0.7
301,553 + +0.2
301,553 + +0.2
301,554 - -2.5
301,554 - +0.8
301,554 - -0.0
301,560 + -0.9
301,560 + +0.1
301,560 + +0.1
301,560 + -0.6
301,560 + -0.8
301,560 + -0.5
301,561 - +1.1
301,561 - -0.8
301,561 - -0.4
301,561 - +0.8
301,577 + -0.1
301,577 + +0.9
301,578 - +0.1
301,611 + -1.2
301,611 + -0.1
301,612 - +0.5
301,612 - -0.3
301,612 - +0.2
301,612 - -0.7
301,612 - -0.3
301,612 - +1.0
301,612 - -0.3
301,612 - +1.6
301,612 - -0.2
301,612 - +0.1
301,657 + +0.1
301,657 + -0.3
301,657 + +0.7
301,658 - -0.4
301,658 - -0.5
301,742 - OH686_01330 0.16 +0.3
301,944 + OH686_01330 0.32 +1.3
301,944 + OH686_01330 0.32 +0.7
301,944 + OH686_01330 0.32 -0.4
301,944 + OH686_01330 0.32 -1.1
301,944 + OH686_01330 0.32 -1.1
301,945 - OH686_01330 0.32 -0.1
301,945 - OH686_01330 0.32 +0.6
301,945 - OH686_01330 0.32 +0.6
301,945 - OH686_01330 0.32 +0.1
301,945 - OH686_01330 0.32 -1.5
301,945 - OH686_01330 0.32 -0.3
302,172 + OH686_01330 0.51 -0.7
302,173 - OH686_01330 0.51 -0.4
302,200 - OH686_01330 0.53 -0.7
302,224 - OH686_01330 0.55 +0.1
302,224 - OH686_01330 0.55 +1.3
302,349 + OH686_01330 0.66 -0.7
302,349 + OH686_01330 0.66 +1.2
302,349 + OH686_01330 0.66 -0.9
302,349 + OH686_01330 0.66 +0.3
302,349 + OH686_01330 0.66 -1.4
302,350 - OH686_01330 0.66 -0.2
302,350 - OH686_01330 0.66 -0.3
302,350 - OH686_01330 0.66 +0.7
302,355 + OH686_01330 0.66 +1.6
302,355 + OH686_01330 0.66 -0.1
302,355 + OH686_01330 0.66 +2.1
302,355 + OH686_01330 0.66 -0.2
302,355 + OH686_01330 0.66 +0.6
302,355 + OH686_01330 0.66 -0.4
302,355 + OH686_01330 0.66 +0.8
302,356 - OH686_01330 0.66 -0.9
302,356 - OH686_01330 0.66 +0.6
302,356 - OH686_01330 0.66 +0.7
302,356 - OH686_01330 0.66 +2.0
302,356 - OH686_01330 0.66 -1.6
302,356 - OH686_01330 0.66 +1.1
302,388 + OH686_01330 0.69 -2.3
302,388 + OH686_01330 0.69 -0.5
302,388 + OH686_01330 0.69 +0.2
302,389 - OH686_01330 0.69 +0.5
302,536 - OH686_01330 0.81 -1.4
302,536 - OH686_01330 0.81 -0.6
302,536 - OH686_01330 0.81 +0.2

Or see this region's nucleotide sequence