Strain Fitness in Serratia liquefaciens MT49 around IAI46_25185

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_25180 and IAI46_25185 are separated by 1 nucleotidesIAI46_25185 and IAI46_25190 are separated by 48 nucleotidesIAI46_25190 and IAI46_25195 are separated by 11 nucleotides IAI46_25180: IAI46_25180 - phosphate ABC transporter permease PstC, at 5,377,538 to 5,378,494 _25180 IAI46_25185: IAI46_25185 - phosphate ABC transporter permease PstA, at 5,378,496 to 5,379,386 _25185 IAI46_25190: IAI46_25190 - phosphate ABC transporter ATP-binding protein PstB, at 5,379,435 to 5,380,211 _25190 IAI46_25195: IAI46_25195 - phosphate signaling complex protein PhoU, at 5,380,223 to 5,380,957 _25195 Position (kb) 5378 5379 5380Strain fitness (log2 ratio) -2 -1 0 1 2at 5377.537 kb on + strandat 5377.537 kb on + strandat 5377.538 kb on - strandat 5377.538 kb on - strandat 5377.624 kb on + strandat 5377.629 kb on + strandat 5377.629 kb on + strandat 5377.630 kb on - strandat 5377.649 kb on - strand, within IAI46_25180at 5377.649 kb on - strand, within IAI46_25180at 5377.649 kb on - strand, within IAI46_25180at 5377.684 kb on - strand, within IAI46_25180at 5377.763 kb on + strand, within IAI46_25180at 5377.763 kb on + strand, within IAI46_25180at 5377.764 kb on - strand, within IAI46_25180at 5377.764 kb on - strand, within IAI46_25180at 5377.764 kb on - strand, within IAI46_25180at 5377.764 kb on - strand, within IAI46_25180at 5377.769 kb on - strand, within IAI46_25180at 5377.806 kb on + strand, within IAI46_25180at 5377.961 kb on + strand, within IAI46_25180at 5378.075 kb on - strand, within IAI46_25180at 5378.075 kb on - strand, within IAI46_25180at 5378.080 kb on + strand, within IAI46_25180at 5378.081 kb on - strand, within IAI46_25180at 5378.087 kb on + strand, within IAI46_25180at 5378.088 kb on - strand, within IAI46_25180at 5378.089 kb on + strand, within IAI46_25180at 5378.150 kb on + strand, within IAI46_25180at 5378.193 kb on + strand, within IAI46_25180at 5378.193 kb on + strand, within IAI46_25180at 5378.193 kb on + strand, within IAI46_25180at 5378.194 kb on - strand, within IAI46_25180at 5378.204 kb on - strand, within IAI46_25180at 5378.229 kb on + strand, within IAI46_25180at 5378.229 kb on + strand, within IAI46_25180at 5378.229 kb on + strand, within IAI46_25180at 5378.230 kb on - strand, within IAI46_25180at 5378.294 kb on + strand, within IAI46_25180at 5378.294 kb on + strand, within IAI46_25180at 5378.295 kb on - strand, within IAI46_25180at 5378.295 kb on - strand, within IAI46_25180at 5378.295 kb on - strand, within IAI46_25180at 5378.318 kb on + strand, within IAI46_25180at 5378.318 kb on + strand, within IAI46_25180at 5378.318 kb on + strand, within IAI46_25180at 5378.318 kb on + strand, within IAI46_25180at 5378.318 kb on + strand, within IAI46_25180at 5378.318 kb on + strand, within IAI46_25180at 5378.318 kb on + strand, within IAI46_25180at 5378.318 kb on + strand, within IAI46_25180at 5378.319 kb on - strand, within IAI46_25180at 5378.319 kb on - strand, within IAI46_25180at 5378.425 kb on + strandat 5378.434 kb on + strandat 5378.504 kb on + strandat 5378.504 kb on + strandat 5378.504 kb on + strandat 5378.505 kb on - strandat 5378.519 kb on + strandat 5378.520 kb on - strandat 5378.524 kb on + strandat 5378.525 kb on - strandat 5378.714 kb on + strand, within IAI46_25185at 5378.815 kb on - strand, within IAI46_25185at 5378.815 kb on - strand, within IAI46_25185at 5378.815 kb on - strand, within IAI46_25185at 5378.834 kb on + strand, within IAI46_25185at 5378.864 kb on + strand, within IAI46_25185at 5378.917 kb on - strand, within IAI46_25185at 5379.006 kb on - strand, within IAI46_25185at 5379.017 kb on + strand, within IAI46_25185at 5379.017 kb on + strand, within IAI46_25185at 5379.017 kb on + strand, within IAI46_25185at 5379.018 kb on - strand, within IAI46_25185at 5379.018 kb on - strand, within IAI46_25185at 5379.058 kb on - strand, within IAI46_25185at 5379.185 kb on + strand, within IAI46_25185at 5379.186 kb on - strand, within IAI46_25185at 5379.319 kb on + strandat 5379.320 kb on - strandat 5379.337 kb on + strandat 5379.338 kb on - strandat 5379.338 kb on - strandat 5379.344 kb on + strandat 5379.440 kb on + strandat 5379.440 kb on + strandat 5379.440 kb on + strandat 5379.440 kb on + strandat 5379.440 kb on + strandat 5379.441 kb on - strandat 5379.492 kb on + strandat 5379.493 kb on - strandat 5379.588 kb on - strand, within IAI46_25190at 5379.615 kb on + strand, within IAI46_25190at 5379.615 kb on + strand, within IAI46_25190at 5379.616 kb on - strand, within IAI46_25190at 5379.616 kb on - strand, within IAI46_25190at 5379.891 kb on + strand, within IAI46_25190at 5379.961 kb on + strand, within IAI46_25190at 5380.007 kb on + strand, within IAI46_25190at 5380.044 kb on + strand, within IAI46_25190at 5380.044 kb on + strand, within IAI46_25190at 5380.045 kb on - strand, within IAI46_25190at 5380.060 kb on + strand, within IAI46_25190at 5380.061 kb on - strand, within IAI46_25190at 5380.109 kb on + strand, within IAI46_25190at 5380.109 kb on + strand, within IAI46_25190at 5380.109 kb on + strand, within IAI46_25190at 5380.109 kb on + strand, within IAI46_25190at 5380.109 kb on + strand, within IAI46_25190at 5380.109 kb on + strand, within IAI46_25190at 5380.109 kb on + strand, within IAI46_25190at 5380.109 kb on + strand, within IAI46_25190at 5380.109 kb on + strand, within IAI46_25190at 5380.109 kb on + strand, within IAI46_25190at 5380.109 kb on + strand, within IAI46_25190at 5380.113 kb on + strand, within IAI46_25190at 5380.113 kb on + strand, within IAI46_25190at 5380.113 kb on + strand, within IAI46_25190at 5380.114 kb on - strand, within IAI46_25190at 5380.142 kb on + strandat 5380.188 kb on + strandat 5380.188 kb on + strandat 5380.339 kb on + strand, within IAI46_25195

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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5,377,537 + -0.4
5,377,537 + -0.6
5,377,538 - -0.0
5,377,538 - +0.5
5,377,624 + +0.5
5,377,629 + -0.2
5,377,629 + +0.2
5,377,630 - -0.3
5,377,649 - IAI46_25180 0.12 -0.0
5,377,649 - IAI46_25180 0.12 +0.1
5,377,649 - IAI46_25180 0.12 +0.1
5,377,684 - IAI46_25180 0.15 +0.6
5,377,763 + IAI46_25180 0.24 -1.2
5,377,763 + IAI46_25180 0.24 -0.2
5,377,764 - IAI46_25180 0.24 -0.8
5,377,764 - IAI46_25180 0.24 -1.8
5,377,764 - IAI46_25180 0.24 +0.4
5,377,764 - IAI46_25180 0.24 +0.8
5,377,769 - IAI46_25180 0.24 +0.8
5,377,806 + IAI46_25180 0.28 -0.3
5,377,961 + IAI46_25180 0.44 +0.3
5,378,075 - IAI46_25180 0.56 +0.2
5,378,075 - IAI46_25180 0.56 -0.5
5,378,080 + IAI46_25180 0.57 +0.7
5,378,081 - IAI46_25180 0.57 -0.7
5,378,087 + IAI46_25180 0.57 +0.7
5,378,088 - IAI46_25180 0.57 +0.9
5,378,089 + IAI46_25180 0.58 +1.5
5,378,150 + IAI46_25180 0.64 -0.3
5,378,193 + IAI46_25180 0.68 -0.3
5,378,193 + IAI46_25180 0.68 +0.1
5,378,193 + IAI46_25180 0.68 -0.3
5,378,194 - IAI46_25180 0.69 +1.0
5,378,204 - IAI46_25180 0.70 +1.0
5,378,229 + IAI46_25180 0.72 +0.3
5,378,229 + IAI46_25180 0.72 -0.1
5,378,229 + IAI46_25180 0.72 -0.0
5,378,230 - IAI46_25180 0.72 +0.4
5,378,294 + IAI46_25180 0.79 -0.0
5,378,294 + IAI46_25180 0.79 +0.7
5,378,295 - IAI46_25180 0.79 -0.0
5,378,295 - IAI46_25180 0.79 +0.2
5,378,295 - IAI46_25180 0.79 +0.3
5,378,318 + IAI46_25180 0.82 +0.8
5,378,318 + IAI46_25180 0.82 +0.3
5,378,318 + IAI46_25180 0.82 +2.5
5,378,318 + IAI46_25180 0.82 -0.0
5,378,318 + IAI46_25180 0.82 +0.2
5,378,318 + IAI46_25180 0.82 -0.6
5,378,318 + IAI46_25180 0.82 +0.2
5,378,318 + IAI46_25180 0.82 -0.2
5,378,319 - IAI46_25180 0.82 -0.8
5,378,319 - IAI46_25180 0.82 +0.6
5,378,425 + -0.7
5,378,434 + +0.1
5,378,504 + -1.1
5,378,504 + -0.0
5,378,504 + -0.6
5,378,505 - +0.5
5,378,519 + -1.4
5,378,520 - -0.1
5,378,524 + +0.1
5,378,525 - -0.2
5,378,714 + IAI46_25185 0.24 +0.1
5,378,815 - IAI46_25185 0.36 -1.4
5,378,815 - IAI46_25185 0.36 +0.9
5,378,815 - IAI46_25185 0.36 -0.2
5,378,834 + IAI46_25185 0.38 +0.5
5,378,864 + IAI46_25185 0.41 +0.7
5,378,917 - IAI46_25185 0.47 +1.3
5,379,006 - IAI46_25185 0.57 -0.6
5,379,017 + IAI46_25185 0.58 +0.3
5,379,017 + IAI46_25185 0.58 +0.3
5,379,017 + IAI46_25185 0.58 -0.3
5,379,018 - IAI46_25185 0.59 -0.2
5,379,018 - IAI46_25185 0.59 -0.7
5,379,058 - IAI46_25185 0.63 -0.6
5,379,185 + IAI46_25185 0.77 +0.5
5,379,186 - IAI46_25185 0.77 -0.9
5,379,319 + +0.5
5,379,320 - -0.4
5,379,337 + -0.8
5,379,338 - +0.9
5,379,338 - -0.1
5,379,344 + +0.9
5,379,440 + +0.9
5,379,440 + -0.5
5,379,440 + -0.6
5,379,440 + -0.3
5,379,440 + +0.8
5,379,441 - +1.5
5,379,492 + -0.7
5,379,493 - +0.9
5,379,588 - IAI46_25190 0.20 -0.1
5,379,615 + IAI46_25190 0.23 -0.4
5,379,615 + IAI46_25190 0.23 +1.5
5,379,616 - IAI46_25190 0.23 -0.7
5,379,616 - IAI46_25190 0.23 -0.4
5,379,891 + IAI46_25190 0.59 +0.7
5,379,961 + IAI46_25190 0.68 -0.4
5,380,007 + IAI46_25190 0.74 -0.3
5,380,044 + IAI46_25190 0.78 -1.2
5,380,044 + IAI46_25190 0.78 +0.1
5,380,045 - IAI46_25190 0.79 -0.4
5,380,060 + IAI46_25190 0.80 +0.7
5,380,061 - IAI46_25190 0.81 -0.2
5,380,109 + IAI46_25190 0.87 +0.6
5,380,109 + IAI46_25190 0.87 -2.1
5,380,109 + IAI46_25190 0.87 +0.6
5,380,109 + IAI46_25190 0.87 -0.1
5,380,109 + IAI46_25190 0.87 -0.2
5,380,109 + IAI46_25190 0.87 +0.2
5,380,109 + IAI46_25190 0.87 -0.0
5,380,109 + IAI46_25190 0.87 +0.2
5,380,109 + IAI46_25190 0.87 -0.0
5,380,109 + IAI46_25190 0.87 -0.2
5,380,109 + IAI46_25190 0.87 +0.2
5,380,113 + IAI46_25190 0.87 +0.3
5,380,113 + IAI46_25190 0.87 +0.6
5,380,113 + IAI46_25190 0.87 -0.4
5,380,114 - IAI46_25190 0.87 -0.2
5,380,142 + +0.8
5,380,188 + -0.3
5,380,188 + -0.5
5,380,339 + IAI46_25195 0.16 -0.1

Or see this region's nucleotide sequence