Strain Fitness in Serratia liquefaciens MT49 around IAI46_23110

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_23105 and IAI46_23110 are separated by 416 nucleotidesIAI46_23110 and IAI46_23115 are separated by 45 nucleotides IAI46_23105: IAI46_23105 - ketopantoate/pantoate/pantothenate transporter PanS, at 4,930,081 to 4,930,998 _23105 IAI46_23110: IAI46_23110 - ShlB/FhaC/HecB family hemolysin secretion/activation protein, at 4,931,415 to 4,933,091 _23110 IAI46_23115: IAI46_23115 - hemagglutinin repeat-containing protein, at 4,933,137 to 4,937,984 _23115 Position (kb) 4931 4932 4933 4934Strain fitness (log2 ratio) -2 -1 0 1 2at 4930.417 kb on + strand, within IAI46_23105at 4930.418 kb on - strand, within IAI46_23105at 4930.511 kb on - strand, within IAI46_23105at 4930.511 kb on - strand, within IAI46_23105at 4930.581 kb on + strand, within IAI46_23105at 4930.615 kb on - strand, within IAI46_23105at 4930.827 kb on + strand, within IAI46_23105at 4930.827 kb on + strand, within IAI46_23105at 4930.828 kb on - strand, within IAI46_23105at 4930.881 kb on + strand, within IAI46_23105at 4930.939 kb on - strandat 4931.083 kb on - strandat 4931.095 kb on + strandat 4931.096 kb on - strandat 4931.096 kb on - strandat 4931.096 kb on - strandat 4931.098 kb on + strandat 4931.099 kb on - strandat 4931.197 kb on + strandat 4931.211 kb on + strandat 4931.212 kb on - strandat 4931.212 kb on - strandat 4931.227 kb on - strandat 4931.285 kb on - strandat 4931.301 kb on + strandat 4931.403 kb on + strandat 4931.412 kb on - strandat 4931.450 kb on + strandat 4931.451 kb on - strandat 4931.535 kb on - strandat 4931.557 kb on + strandat 4931.557 kb on + strandat 4931.557 kb on + strandat 4931.558 kb on - strandat 4931.583 kb on - strand, within IAI46_23110at 4931.583 kb on - strand, within IAI46_23110at 4931.667 kb on + strand, within IAI46_23110at 4931.667 kb on + strand, within IAI46_23110at 4931.668 kb on - strand, within IAI46_23110at 4931.668 kb on - strand, within IAI46_23110at 4931.782 kb on + strand, within IAI46_23110at 4931.782 kb on + strand, within IAI46_23110at 4931.782 kb on + strand, within IAI46_23110at 4931.784 kb on + strand, within IAI46_23110at 4931.799 kb on + strand, within IAI46_23110at 4931.799 kb on + strand, within IAI46_23110at 4931.800 kb on - strand, within IAI46_23110at 4931.800 kb on - strand, within IAI46_23110at 4931.800 kb on - strand, within IAI46_23110at 4931.801 kb on + strand, within IAI46_23110at 4931.801 kb on + strand, within IAI46_23110at 4931.801 kb on + strand, within IAI46_23110at 4931.802 kb on - strand, within IAI46_23110at 4931.802 kb on - strand, within IAI46_23110at 4931.802 kb on - strand, within IAI46_23110at 4931.848 kb on + strand, within IAI46_23110at 4931.849 kb on - strand, within IAI46_23110at 4931.849 kb on - strand, within IAI46_23110at 4931.920 kb on + strand, within IAI46_23110at 4931.948 kb on - strand, within IAI46_23110at 4931.954 kb on - strand, within IAI46_23110at 4931.975 kb on - strand, within IAI46_23110at 4931.975 kb on - strand, within IAI46_23110at 4932.017 kb on + strand, within IAI46_23110at 4932.019 kb on + strand, within IAI46_23110at 4932.019 kb on + strand, within IAI46_23110at 4932.020 kb on - strand, within IAI46_23110at 4932.063 kb on - strand, within IAI46_23110at 4932.071 kb on + strand, within IAI46_23110at 4932.071 kb on + strand, within IAI46_23110at 4932.071 kb on + strand, within IAI46_23110at 4932.071 kb on + strand, within IAI46_23110at 4932.075 kb on - strand, within IAI46_23110at 4932.075 kb on - strand, within IAI46_23110at 4932.105 kb on - strand, within IAI46_23110at 4932.105 kb on - strand, within IAI46_23110at 4932.105 kb on - strand, within IAI46_23110at 4932.232 kb on - strand, within IAI46_23110at 4932.244 kb on - strand, within IAI46_23110at 4932.255 kb on + strand, within IAI46_23110at 4932.255 kb on + strand, within IAI46_23110at 4932.255 kb on + strand, within IAI46_23110at 4932.300 kb on + strand, within IAI46_23110at 4932.301 kb on - strand, within IAI46_23110at 4932.301 kb on - strand, within IAI46_23110at 4932.342 kb on + strand, within IAI46_23110at 4932.343 kb on - strand, within IAI46_23110at 4932.369 kb on + strand, within IAI46_23110at 4932.369 kb on + strand, within IAI46_23110at 4932.370 kb on - strand, within IAI46_23110at 4932.387 kb on + strand, within IAI46_23110at 4932.387 kb on + strand, within IAI46_23110at 4932.392 kb on - strand, within IAI46_23110at 4932.392 kb on - strand, within IAI46_23110at 4932.397 kb on - strand, within IAI46_23110at 4932.444 kb on - strand, within IAI46_23110at 4932.456 kb on - strand, within IAI46_23110at 4932.459 kb on + strand, within IAI46_23110at 4932.472 kb on + strand, within IAI46_23110at 4932.473 kb on - strand, within IAI46_23110at 4932.473 kb on - strand, within IAI46_23110at 4932.476 kb on + strand, within IAI46_23110at 4932.476 kb on + strand, within IAI46_23110at 4932.476 kb on + strand, within IAI46_23110at 4932.476 kb on + strand, within IAI46_23110at 4932.477 kb on - strand, within IAI46_23110at 4932.477 kb on - strand, within IAI46_23110at 4932.477 kb on - strand, within IAI46_23110at 4932.477 kb on - strand, within IAI46_23110at 4932.477 kb on - strand, within IAI46_23110at 4932.477 kb on - strand, within IAI46_23110at 4932.477 kb on - strand, within IAI46_23110at 4932.696 kb on + strand, within IAI46_23110at 4932.697 kb on - strand, within IAI46_23110at 4932.697 kb on - strand, within IAI46_23110at 4932.726 kb on + strand, within IAI46_23110at 4932.726 kb on + strand, within IAI46_23110at 4932.887 kb on + strand, within IAI46_23110at 4932.888 kb on - strand, within IAI46_23110at 4933.063 kb on + strandat 4933.063 kb on + strandat 4933.080 kb on + strandat 4933.081 kb on - strandat 4933.090 kb on - strandat 4933.120 kb on + strandat 4933.120 kb on + strandat 4933.121 kb on - strandat 4933.121 kb on - strandat 4933.121 kb on - strandat 4933.122 kb on + strandat 4933.122 kb on + strandat 4933.122 kb on + strandat 4933.122 kb on + strandat 4933.123 kb on - strandat 4933.123 kb on - strandat 4933.123 kb on - strandat 4933.123 kb on - strandat 4933.130 kb on + strandat 4933.131 kb on - strandat 4933.131 kb on - strandat 4933.131 kb on - strandat 4933.131 kb on - strandat 4933.131 kb on - strandat 4933.131 kb on - strandat 4933.148 kb on + strandat 4933.149 kb on - strandat 4933.177 kb on + strandat 4933.178 kb on - strandat 4933.301 kb on + strandat 4933.314 kb on - strandat 4933.334 kb on + strandat 4933.335 kb on - strandat 4933.341 kb on + strandat 4933.501 kb on + strandat 4933.501 kb on + strandat 4933.539 kb on + strandat 4933.540 kb on - strandat 4933.587 kb on - strandat 4933.592 kb on + strandat 4933.774 kb on - strand, within IAI46_23115at 4933.834 kb on + strand, within IAI46_23115at 4933.894 kb on + strand, within IAI46_23115at 4933.897 kb on + strand, within IAI46_23115at 4933.898 kb on - strand, within IAI46_23115at 4933.914 kb on + strand, within IAI46_23115at 4933.914 kb on + strand, within IAI46_23115at 4933.914 kb on + strand, within IAI46_23115at 4933.914 kb on + strand, within IAI46_23115at 4933.914 kb on + strand, within IAI46_23115at 4933.914 kb on + strand, within IAI46_23115at 4933.914 kb on + strand, within IAI46_23115at 4933.915 kb on - strand, within IAI46_23115at 4933.915 kb on - strand, within IAI46_23115at 4933.915 kb on - strand, within IAI46_23115at 4933.915 kb on - strand, within IAI46_23115at 4933.915 kb on - strand, within IAI46_23115at 4933.915 kb on - strand, within IAI46_23115at 4933.915 kb on - strand, within IAI46_23115at 4933.915 kb on - strand, within IAI46_23115at 4933.915 kb on - strand, within IAI46_23115at 4933.917 kb on + strand, within IAI46_23115at 4933.917 kb on + strand, within IAI46_23115at 4933.917 kb on + strand, within IAI46_23115at 4933.918 kb on - strand, within IAI46_23115at 4933.918 kb on - strand, within IAI46_23115at 4933.949 kb on + strand, within IAI46_23115at 4933.949 kb on + strand, within IAI46_23115at 4933.950 kb on - strand, within IAI46_23115at 4933.950 kb on - strand, within IAI46_23115at 4933.958 kb on + strand, within IAI46_23115at 4934.029 kb on - strand, within IAI46_23115at 4934.091 kb on + strand, within IAI46_23115

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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4,930,417 + IAI46_23105 0.37 +0.1
4,930,418 - IAI46_23105 0.37 -0.1
4,930,511 - IAI46_23105 0.47 -0.6
4,930,511 - IAI46_23105 0.47 +0.2
4,930,581 + IAI46_23105 0.54 +0.3
4,930,615 - IAI46_23105 0.58 +0.3
4,930,827 + IAI46_23105 0.81 -0.2
4,930,827 + IAI46_23105 0.81 -0.1
4,930,828 - IAI46_23105 0.81 -0.2
4,930,881 + IAI46_23105 0.87 -0.3
4,930,939 - -0.1
4,931,083 - -0.8
4,931,095 + +0.8
4,931,096 - +0.6
4,931,096 - +0.5
4,931,096 - +0.5
4,931,098 + +0.1
4,931,099 - +1.3
4,931,197 + -0.9
4,931,211 + +0.0
4,931,212 - -0.8
4,931,212 - +0.5
4,931,227 - +0.7
4,931,285 - +0.3
4,931,301 + -0.0
4,931,403 + +0.7
4,931,412 - +0.0
4,931,450 + +0.6
4,931,451 - +0.3
4,931,535 - -0.1
4,931,557 + +1.0
4,931,557 + +0.3
4,931,557 + +0.4
4,931,558 - -0.0
4,931,583 - IAI46_23110 0.10 -0.5
4,931,583 - IAI46_23110 0.10 +0.7
4,931,667 + IAI46_23110 0.15 +0.0
4,931,667 + IAI46_23110 0.15 +0.3
4,931,668 - IAI46_23110 0.15 +0.1
4,931,668 - IAI46_23110 0.15 +0.3
4,931,782 + IAI46_23110 0.22 -0.6
4,931,782 + IAI46_23110 0.22 -0.2
4,931,782 + IAI46_23110 0.22 +0.0
4,931,784 + IAI46_23110 0.22 -0.4
4,931,799 + IAI46_23110 0.23 +0.3
4,931,799 + IAI46_23110 0.23 -0.1
4,931,800 - IAI46_23110 0.23 +0.3
4,931,800 - IAI46_23110 0.23 -0.3
4,931,800 - IAI46_23110 0.23 +0.3
4,931,801 + IAI46_23110 0.23 -0.2
4,931,801 + IAI46_23110 0.23 +0.2
4,931,801 + IAI46_23110 0.23 +0.4
4,931,802 - IAI46_23110 0.23 -0.1
4,931,802 - IAI46_23110 0.23 +0.0
4,931,802 - IAI46_23110 0.23 -0.2
4,931,848 + IAI46_23110 0.26 +0.2
4,931,849 - IAI46_23110 0.26 +0.3
4,931,849 - IAI46_23110 0.26 -0.4
4,931,920 + IAI46_23110 0.30 -0.4
4,931,948 - IAI46_23110 0.32 -0.0
4,931,954 - IAI46_23110 0.32 +0.3
4,931,975 - IAI46_23110 0.33 -0.1
4,931,975 - IAI46_23110 0.33 +0.5
4,932,017 + IAI46_23110 0.36 -0.9
4,932,019 + IAI46_23110 0.36 +0.3
4,932,019 + IAI46_23110 0.36 -0.7
4,932,020 - IAI46_23110 0.36 +0.2
4,932,063 - IAI46_23110 0.39 +1.3
4,932,071 + IAI46_23110 0.39 -0.1
4,932,071 + IAI46_23110 0.39 +0.6
4,932,071 + IAI46_23110 0.39 -0.2
4,932,071 + IAI46_23110 0.39 +0.6
4,932,075 - IAI46_23110 0.39 +1.3
4,932,075 - IAI46_23110 0.39 +0.4
4,932,105 - IAI46_23110 0.41 +0.2
4,932,105 - IAI46_23110 0.41 +1.8
4,932,105 - IAI46_23110 0.41 +0.4
4,932,232 - IAI46_23110 0.49 -1.1
4,932,244 - IAI46_23110 0.49 +0.6
4,932,255 + IAI46_23110 0.50 +0.6
4,932,255 + IAI46_23110 0.50 +0.8
4,932,255 + IAI46_23110 0.50 -0.3
4,932,300 + IAI46_23110 0.53 +0.5
4,932,301 - IAI46_23110 0.53 -0.0
4,932,301 - IAI46_23110 0.53 -0.6
4,932,342 + IAI46_23110 0.55 +0.4
4,932,343 - IAI46_23110 0.55 +0.3
4,932,369 + IAI46_23110 0.57 -0.3
4,932,369 + IAI46_23110 0.57 +0.6
4,932,370 - IAI46_23110 0.57 +0.3
4,932,387 + IAI46_23110 0.58 -0.9
4,932,387 + IAI46_23110 0.58 +0.5
4,932,392 - IAI46_23110 0.58 -0.7
4,932,392 - IAI46_23110 0.58 +0.6
4,932,397 - IAI46_23110 0.59 +0.2
4,932,444 - IAI46_23110 0.61 +0.7
4,932,456 - IAI46_23110 0.62 +0.6
4,932,459 + IAI46_23110 0.62 -0.1
4,932,472 + IAI46_23110 0.63 +0.3
4,932,473 - IAI46_23110 0.63 -0.3
4,932,473 - IAI46_23110 0.63 +0.3
4,932,476 + IAI46_23110 0.63 +0.2
4,932,476 + IAI46_23110 0.63 +0.3
4,932,476 + IAI46_23110 0.63 +0.0
4,932,476 + IAI46_23110 0.63 -0.3
4,932,477 - IAI46_23110 0.63 -0.2
4,932,477 - IAI46_23110 0.63 +0.4
4,932,477 - IAI46_23110 0.63 +0.5
4,932,477 - IAI46_23110 0.63 +0.5
4,932,477 - IAI46_23110 0.63 -0.3
4,932,477 - IAI46_23110 0.63 -0.3
4,932,477 - IAI46_23110 0.63 -0.5
4,932,696 + IAI46_23110 0.76 -0.3
4,932,697 - IAI46_23110 0.76 +0.2
4,932,697 - IAI46_23110 0.76 -0.3
4,932,726 + IAI46_23110 0.78 -0.1
4,932,726 + IAI46_23110 0.78 -0.3
4,932,887 + IAI46_23110 0.88 +0.8
4,932,888 - IAI46_23110 0.88 -0.2
4,933,063 + -1.5
4,933,063 + +0.5
4,933,080 + -0.9
4,933,081 - +0.3
4,933,090 - +1.2
4,933,120 + +0.4
4,933,120 + +0.0
4,933,121 - -0.6
4,933,121 - +0.3
4,933,121 - +0.3
4,933,122 + -0.4
4,933,122 + +0.3
4,933,122 + +0.9
4,933,122 + +0.5
4,933,123 - +0.0
4,933,123 - +1.5
4,933,123 - +0.4
4,933,123 - +0.4
4,933,130 + -0.6
4,933,131 - -0.4
4,933,131 - +0.1
4,933,131 - +0.3
4,933,131 - -0.1
4,933,131 - +0.1
4,933,131 - +0.2
4,933,148 + -0.1
4,933,149 - +0.1
4,933,177 + -0.4
4,933,178 - -0.2
4,933,301 + +0.6
4,933,314 - +1.3
4,933,334 + +0.5
4,933,335 - +0.1
4,933,341 + -2.0
4,933,501 + +0.7
4,933,501 + +0.4
4,933,539 + +0.5
4,933,540 - +0.5
4,933,587 - +0.8
4,933,592 + -0.3
4,933,774 - IAI46_23115 0.13 +0.7
4,933,834 + IAI46_23115 0.14 +1.2
4,933,894 + IAI46_23115 0.16 +0.1
4,933,897 + IAI46_23115 0.16 +0.2
4,933,898 - IAI46_23115 0.16 -0.5
4,933,914 + IAI46_23115 0.16 +0.2
4,933,914 + IAI46_23115 0.16 +0.4
4,933,914 + IAI46_23115 0.16 +1.1
4,933,914 + IAI46_23115 0.16 -0.5
4,933,914 + IAI46_23115 0.16 -0.6
4,933,914 + IAI46_23115 0.16 +0.0
4,933,914 + IAI46_23115 0.16 -1.5
4,933,915 - IAI46_23115 0.16 +0.5
4,933,915 - IAI46_23115 0.16 +0.4
4,933,915 - IAI46_23115 0.16 +0.1
4,933,915 - IAI46_23115 0.16 -0.6
4,933,915 - IAI46_23115 0.16 +0.7
4,933,915 - IAI46_23115 0.16 +0.6
4,933,915 - IAI46_23115 0.16 -0.8
4,933,915 - IAI46_23115 0.16 -0.6
4,933,915 - IAI46_23115 0.16 +0.0
4,933,917 + IAI46_23115 0.16 -0.1
4,933,917 + IAI46_23115 0.16 -0.0
4,933,917 + IAI46_23115 0.16 +0.5
4,933,918 - IAI46_23115 0.16 -0.0
4,933,918 - IAI46_23115 0.16 -0.9
4,933,949 + IAI46_23115 0.17 +0.2
4,933,949 + IAI46_23115 0.17 +0.1
4,933,950 - IAI46_23115 0.17 -0.2
4,933,950 - IAI46_23115 0.17 -0.8
4,933,958 + IAI46_23115 0.17 -0.0
4,934,029 - IAI46_23115 0.18 -1.0
4,934,091 + IAI46_23115 0.20 +0.5

Or see this region's nucleotide sequence