Strain Fitness in Serratia liquefaciens MT49 around IAI46_16695

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16690 and IAI46_16695 overlap by 4 nucleotidesIAI46_16695 and IAI46_16700 overlap by 4 nucleotidesIAI46_16700 and IAI46_16705 are separated by 28 nucleotides IAI46_16690: IAI46_16690 - thiaminase II, at 3,496,623 to 3,497,303 _16690 IAI46_16695: IAI46_16695 - ABC transporter ATP-binding protein, at 3,497,300 to 3,498,055 _16695 IAI46_16700: IAI46_16700 - ABC transporter permease, at 3,498,052 to 3,498,819 _16700 IAI46_16705: IAI46_16705 - ABC transporter substrate-binding protein, at 3,498,848 to 3,499,783 _16705 Position (kb) 3497 3498 3499Strain fitness (log2 ratio) -1 0 1 2at 3496.310 kb on - strandat 3496.318 kb on + strandat 3496.331 kb on - strandat 3496.365 kb on + strandat 3496.397 kb on + strandat 3496.440 kb on - strandat 3496.448 kb on + strandat 3496.450 kb on + strandat 3496.628 kb on + strandat 3496.636 kb on + strandat 3496.695 kb on + strand, within IAI46_16690at 3496.696 kb on - strand, within IAI46_16690at 3496.696 kb on - strand, within IAI46_16690at 3496.696 kb on - strand, within IAI46_16690at 3496.777 kb on - strand, within IAI46_16690at 3496.777 kb on - strand, within IAI46_16690at 3496.777 kb on - strand, within IAI46_16690at 3496.806 kb on + strand, within IAI46_16690at 3496.975 kb on - strand, within IAI46_16690at 3496.975 kb on - strand, within IAI46_16690at 3496.983 kb on + strand, within IAI46_16690at 3497.136 kb on + strand, within IAI46_16690at 3497.136 kb on + strand, within IAI46_16690at 3497.136 kb on + strand, within IAI46_16690at 3497.137 kb on - strand, within IAI46_16690at 3497.137 kb on - strand, within IAI46_16690at 3497.137 kb on - strand, within IAI46_16690at 3497.165 kb on - strand, within IAI46_16690at 3497.165 kb on - strand, within IAI46_16690at 3497.545 kb on + strand, within IAI46_16695at 3497.552 kb on + strand, within IAI46_16695at 3497.553 kb on - strand, within IAI46_16695at 3497.553 kb on - strand, within IAI46_16695at 3497.553 kb on - strand, within IAI46_16695at 3497.553 kb on - strand, within IAI46_16695at 3497.553 kb on - strand, within IAI46_16695at 3497.553 kb on - strand, within IAI46_16695at 3497.554 kb on + strand, within IAI46_16695at 3497.554 kb on + strand, within IAI46_16695at 3497.554 kb on + strand, within IAI46_16695at 3497.554 kb on + strand, within IAI46_16695at 3497.555 kb on - strand, within IAI46_16695at 3497.555 kb on - strand, within IAI46_16695at 3497.555 kb on - strand, within IAI46_16695at 3497.603 kb on - strand, within IAI46_16695at 3497.687 kb on + strand, within IAI46_16695at 3497.741 kb on - strand, within IAI46_16695at 3497.756 kb on + strand, within IAI46_16695at 3497.861 kb on - strand, within IAI46_16695at 3498.214 kb on + strand, within IAI46_16700at 3498.278 kb on + strand, within IAI46_16700at 3498.505 kb on + strand, within IAI46_16700at 3498.527 kb on + strand, within IAI46_16700at 3498.528 kb on - strand, within IAI46_16700at 3498.560 kb on + strand, within IAI46_16700at 3498.561 kb on - strand, within IAI46_16700at 3498.674 kb on - strand, within IAI46_16700at 3498.674 kb on - strand, within IAI46_16700at 3498.779 kb on + strandat 3498.840 kb on + strandat 3498.860 kb on - strandat 3498.940 kb on + strandat 3498.941 kb on + strandat 3498.943 kb on + strand, within IAI46_16705at 3498.944 kb on - strand, within IAI46_16705at 3498.944 kb on - strand, within IAI46_16705at 3498.946 kb on + strand, within IAI46_16705at 3498.946 kb on + strand, within IAI46_16705

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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3,496,310 - +1.4
3,496,318 + -0.0
3,496,331 - +0.0
3,496,365 + +0.6
3,496,397 + -0.7
3,496,440 - -0.5
3,496,448 + -0.8
3,496,450 + +0.5
3,496,628 + +0.3
3,496,636 + -0.4
3,496,695 + IAI46_16690 0.11 +2.3
3,496,696 - IAI46_16690 0.11 +0.2
3,496,696 - IAI46_16690 0.11 -0.6
3,496,696 - IAI46_16690 0.11 +1.2
3,496,777 - IAI46_16690 0.23 -0.1
3,496,777 - IAI46_16690 0.23 +1.1
3,496,777 - IAI46_16690 0.23 +0.7
3,496,806 + IAI46_16690 0.27 -0.2
3,496,975 - IAI46_16690 0.52 -0.3
3,496,975 - IAI46_16690 0.52 +0.3
3,496,983 + IAI46_16690 0.53 -0.3
3,497,136 + IAI46_16690 0.75 -0.8
3,497,136 + IAI46_16690 0.75 -1.2
3,497,136 + IAI46_16690 0.75 +0.0
3,497,137 - IAI46_16690 0.75 +0.5
3,497,137 - IAI46_16690 0.75 -0.4
3,497,137 - IAI46_16690 0.75 +0.3
3,497,165 - IAI46_16690 0.80 -0.3
3,497,165 - IAI46_16690 0.80 -0.6
3,497,545 + IAI46_16695 0.32 +1.3
3,497,552 + IAI46_16695 0.33 -0.6
3,497,553 - IAI46_16695 0.33 -0.7
3,497,553 - IAI46_16695 0.33 +0.1
3,497,553 - IAI46_16695 0.33 +0.3
3,497,553 - IAI46_16695 0.33 -0.4
3,497,553 - IAI46_16695 0.33 +0.5
3,497,553 - IAI46_16695 0.33 +0.6
3,497,554 + IAI46_16695 0.34 +0.4
3,497,554 + IAI46_16695 0.34 +0.1
3,497,554 + IAI46_16695 0.34 +0.6
3,497,554 + IAI46_16695 0.34 +0.9
3,497,555 - IAI46_16695 0.34 -0.9
3,497,555 - IAI46_16695 0.34 -1.1
3,497,555 - IAI46_16695 0.34 +0.2
3,497,603 - IAI46_16695 0.40 +0.0
3,497,687 + IAI46_16695 0.51 -0.7
3,497,741 - IAI46_16695 0.58 +1.4
3,497,756 + IAI46_16695 0.60 +0.0
3,497,861 - IAI46_16695 0.74 -1.6
3,498,214 + IAI46_16700 0.21 +0.0
3,498,278 + IAI46_16700 0.29 -0.6
3,498,505 + IAI46_16700 0.59 -0.4
3,498,527 + IAI46_16700 0.62 -0.5
3,498,528 - IAI46_16700 0.62 +0.2
3,498,560 + IAI46_16700 0.66 +0.1
3,498,561 - IAI46_16700 0.66 -0.7
3,498,674 - IAI46_16700 0.81 +0.4
3,498,674 - IAI46_16700 0.81 -1.0
3,498,779 + -0.6
3,498,840 + -0.3
3,498,860 - +0.7
3,498,940 + -1.0
3,498,941 + +0.1
3,498,943 + IAI46_16705 0.10 +0.0
3,498,944 - IAI46_16705 0.10 +0.4
3,498,944 - IAI46_16705 0.10 -0.8
3,498,946 + IAI46_16705 0.10 +0.2
3,498,946 + IAI46_16705 0.10 -0.4

Or see this region's nucleotide sequence