Experiment: Cadmium acetate 40 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_15930 and IAI46_15935 are separated by 235 nucleotides IAI46_15935 and IAI46_15940 are separated by 18 nucleotides IAI46_15940 and IAI46_15945 are separated by 12 nucleotides
IAI46_15930: IAI46_15930 - flagellar basal body L-ring protein FlgH, at 3,343,997 to 3,344,695
_15930
IAI46_15935: IAI46_15935 - flagellar basal-body rod protein FlgG, at 3,344,931 to 3,345,713
_15935
IAI46_15940: IAI46_15940 - flagellar basal body rod protein FlgF, at 3,345,732 to 3,346,487
_15940
IAI46_15945: IAI46_15945 - flagellar hook protein FlgE, at 3,346,500 to 3,347,723
_15945
Position (kb)
3344
3345
3346 Strain fitness (log2 ratio)
-2
-1
0
1 at 3343.987 kb on + strand at 3344.015 kb on + strand at 3344.016 kb on - strand at 3344.016 kb on - strand at 3344.031 kb on - strand at 3344.031 kb on - strand at 3344.076 kb on + strand, within IAI46_15930 at 3344.110 kb on + strand, within IAI46_15930 at 3344.263 kb on + strand, within IAI46_15930 at 3344.320 kb on + strand, within IAI46_15930 at 3344.321 kb on - strand, within IAI46_15930 at 3344.345 kb on + strand, within IAI46_15930 at 3344.345 kb on + strand, within IAI46_15930 at 3344.346 kb on - strand, within IAI46_15930 at 3344.517 kb on + strand, within IAI46_15930 at 3344.517 kb on + strand, within IAI46_15930 at 3344.518 kb on - strand, within IAI46_15930 at 3344.614 kb on + strand, within IAI46_15930 at 3344.615 kb on - strand, within IAI46_15930 at 3344.615 kb on - strand, within IAI46_15930 at 3344.739 kb on - strand at 3344.740 kb on - strand at 3344.816 kb on + strand at 3344.932 kb on + strand at 3344.933 kb on - strand at 3344.995 kb on + strand at 3344.996 kb on - strand at 3345.061 kb on + strand, within IAI46_15935 at 3345.062 kb on - strand, within IAI46_15935 at 3345.179 kb on + strand, within IAI46_15935 at 3345.373 kb on + strand, within IAI46_15935 at 3345.577 kb on + strand, within IAI46_15935 at 3345.577 kb on + strand, within IAI46_15935 at 3345.659 kb on + strand at 3346.101 kb on + strand, within IAI46_15940 at 3346.179 kb on - strand, within IAI46_15940 at 3346.192 kb on + strand, within IAI46_15940 at 3346.271 kb on - strand, within IAI46_15940 at 3346.415 kb on + strand at 3346.487 kb on + strand at 3346.488 kb on - strand at 3346.499 kb on - strand at 3346.501 kb on + strand at 3346.501 kb on + strand at 3346.502 kb on - strand at 3346.567 kb on + strand at 3346.571 kb on + strand at 3346.571 kb on + strand at 3346.571 kb on + strand at 3346.571 kb on + strand at 3346.572 kb on - strand at 3346.678 kb on - strand, within IAI46_15945 at 3346.678 kb on - strand, within IAI46_15945
Per-strain Table
Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic remove 3,343,987 + -0.9 3,344,015 + -0.7 3,344,016 - -0.6 3,344,016 - -1.7 3,344,031 - +0.2 3,344,031 - +0.3 3,344,076 + IAI46_15930 0.11 +0.9 3,344,110 + IAI46_15930 0.16 +0.3 3,344,263 + IAI46_15930 0.38 -0.1 3,344,320 + IAI46_15930 0.46 +0.8 3,344,321 - IAI46_15930 0.46 -1.5 3,344,345 + IAI46_15930 0.50 -0.4 3,344,345 + IAI46_15930 0.50 +0.9 3,344,346 - IAI46_15930 0.50 -1.5 3,344,517 + IAI46_15930 0.74 +0.5 3,344,517 + IAI46_15930 0.74 +0.5 3,344,518 - IAI46_15930 0.75 +0.0 3,344,614 + IAI46_15930 0.88 -0.3 3,344,615 - IAI46_15930 0.88 -1.0 3,344,615 - IAI46_15930 0.88 -0.4 3,344,739 - -0.3 3,344,740 - -0.5 3,344,816 + +1.0 3,344,932 + -0.3 3,344,933 - -0.6 3,344,995 + -0.3 3,344,996 - -1.1 3,345,061 + IAI46_15935 0.17 +0.5 3,345,062 - IAI46_15935 0.17 -1.1 3,345,179 + IAI46_15935 0.32 +0.6 3,345,373 + IAI46_15935 0.56 +0.9 3,345,577 + IAI46_15935 0.83 -0.0 3,345,577 + IAI46_15935 0.83 +0.1 3,345,659 + -0.3 3,346,101 + IAI46_15940 0.49 -0.0 3,346,179 - IAI46_15940 0.59 +0.4 3,346,192 + IAI46_15940 0.61 +0.3 3,346,271 - IAI46_15940 0.71 +0.8 3,346,415 + +0.0 3,346,487 + -2.3 3,346,488 - -0.0 3,346,499 - -0.5 3,346,501 + -1.7 3,346,501 + +0.4 3,346,502 - -0.4 3,346,567 + +0.5 3,346,571 + +0.6 3,346,571 + +0.2 3,346,571 + -1.1 3,346,571 + +0.2 3,346,572 - -0.0 3,346,678 - IAI46_15945 0.15 -0.5 3,346,678 - IAI46_15945 0.15 +0.0
Or see this region's nucleotide sequence