Strain Fitness in Serratia liquefaciens MT49 around IAI46_15320

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15315 and IAI46_15320 are separated by 11 nucleotidesIAI46_15320 and IAI46_15325 are separated by 180 nucleotides IAI46_15315: IAI46_15315 - succinylglutamate desuccinylase, at 3,204,276 to 3,205,259 _15315 IAI46_15320: IAI46_15320 - N-succinylarginine dihydrolase, at 3,205,271 to 3,206,611 _15320 IAI46_15325: IAI46_15325 - succinylglutamate-semialdehyde dehydrogenase, at 3,206,792 to 3,208,264 _15325 Position (kb) 3205 3206 3207Strain fitness (log2 ratio) -2 -1 0 1at 3204.277 kb on + strandat 3204.642 kb on - strand, within IAI46_15315at 3204.760 kb on + strand, within IAI46_15315at 3204.761 kb on - strand, within IAI46_15315at 3204.833 kb on - strand, within IAI46_15315at 3205.272 kb on + strandat 3205.392 kb on + strandat 3205.396 kb on - strandat 3205.494 kb on - strand, within IAI46_15320at 3205.596 kb on + strand, within IAI46_15320at 3205.690 kb on - strand, within IAI46_15320at 3205.806 kb on + strand, within IAI46_15320at 3205.832 kb on + strand, within IAI46_15320at 3205.833 kb on - strand, within IAI46_15320at 3205.915 kb on + strand, within IAI46_15320at 3205.915 kb on + strand, within IAI46_15320at 3205.915 kb on + strand, within IAI46_15320at 3205.916 kb on - strand, within IAI46_15320at 3205.916 kb on - strand, within IAI46_15320at 3206.056 kb on - strand, within IAI46_15320at 3206.559 kb on + strandat 3206.559 kb on + strandat 3206.560 kb on - strandat 3206.654 kb on + strandat 3206.654 kb on + strandat 3206.660 kb on - strandat 3206.706 kb on + strandat 3206.707 kb on - strandat 3206.707 kb on - strandat 3206.707 kb on - strandat 3206.720 kb on + strandat 3206.720 kb on + strandat 3206.721 kb on - strandat 3206.753 kb on + strandat 3206.890 kb on - strandat 3207.054 kb on + strand, within IAI46_15325at 3207.130 kb on - strand, within IAI46_15325

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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3,204,277 + +0.7
3,204,642 - IAI46_15315 0.37 +1.3
3,204,760 + IAI46_15315 0.49 +0.5
3,204,761 - IAI46_15315 0.49 +1.5
3,204,833 - IAI46_15315 0.57 -1.0
3,205,272 + +0.5
3,205,392 + -1.1
3,205,396 - -0.5
3,205,494 - IAI46_15320 0.17 -0.5
3,205,596 + IAI46_15320 0.24 +0.5
3,205,690 - IAI46_15320 0.31 +1.6
3,205,806 + IAI46_15320 0.40 +0.2
3,205,832 + IAI46_15320 0.42 -2.0
3,205,833 - IAI46_15320 0.42 +0.6
3,205,915 + IAI46_15320 0.48 +0.7
3,205,915 + IAI46_15320 0.48 -0.5
3,205,915 + IAI46_15320 0.48 +0.3
3,205,916 - IAI46_15320 0.48 -1.1
3,205,916 - IAI46_15320 0.48 -0.1
3,206,056 - IAI46_15320 0.59 -0.4
3,206,559 + +0.5
3,206,559 + -0.1
3,206,560 - +0.2
3,206,654 + +0.4
3,206,654 + +0.0
3,206,660 - -0.7
3,206,706 + +1.0
3,206,707 - -0.7
3,206,707 - +0.7
3,206,707 - -0.2
3,206,720 + -0.9
3,206,720 + -0.3
3,206,721 - +0.5
3,206,753 + +0.5
3,206,890 - +0.7
3,207,054 + IAI46_15325 0.18 +0.1
3,207,130 - IAI46_15325 0.23 +0.6

Or see this region's nucleotide sequence