Experiment: Cadmium acetate 40 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_13360 and IAI46_13365 are separated by 43 nucleotides IAI46_13365 and IAI46_13370 are separated by 471 nucleotides IAI46_13370 and IAI46_13375 are separated by 248 nucleotides
IAI46_13360: IAI46_13360 - heat shock protein HslJ, at 2,852,093 to 2,852,521
_13360
IAI46_13365: IAI46_13365 - DUF333 domain-containing protein, at 2,852,565 to 2,852,825
_13365
IAI46_13370: IAI46_13370 - QacE family quaternary ammonium compound efflux SMR transporter, at 2,853,297 to 2,853,629
_13370
IAI46_13375: IAI46_13375 - pyruvate:ferredoxin (flavodoxin) oxidoreductase, at 2,853,878 to 2,857,411
_13375
Position (kb)
2853
2854 Strain fitness (log2 ratio)
-1
0
1
2 at 2852.498 kb on - strand at 2852.514 kb on + strand at 2852.791 kb on - strand, within IAI46_13365 at 2852.827 kb on - strand at 2852.891 kb on + strand at 2852.946 kb on + strand at 2852.949 kb on - strand at 2853.209 kb on - strand at 2853.402 kb on + strand, within IAI46_13370 at 2853.505 kb on - strand, within IAI46_13370 at 2853.645 kb on - strand at 2853.725 kb on + strand at 2853.726 kb on - strand at 2853.767 kb on - strand at 2853.800 kb on + strand at 2853.800 kb on + strand at 2853.801 kb on - strand at 2853.801 kb on - strand at 2853.801 kb on - strand at 2854.078 kb on - strand at 2854.118 kb on - strand at 2854.539 kb on - strand, within IAI46_13375 at 2854.571 kb on + strand, within IAI46_13375 at 2854.572 kb on - strand, within IAI46_13375 at 2854.574 kb on - strand, within IAI46_13375
Per-strain Table
Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic remove 2,852,498 - -0.1 2,852,514 + -0.0 2,852,791 - IAI46_13365 0.87 -0.1 2,852,827 - +0.9 2,852,891 + -1.5 2,852,946 + -1.3 2,852,949 - +0.7 2,853,209 - -0.8 2,853,402 + IAI46_13370 0.32 +0.4 2,853,505 - IAI46_13370 0.62 +0.3 2,853,645 - +0.7 2,853,725 + +0.9 2,853,726 - +0.4 2,853,767 - -0.5 2,853,800 + +0.0 2,853,800 + -0.4 2,853,801 - -0.2 2,853,801 - -0.0 2,853,801 - +1.0 2,854,078 - +0.8 2,854,118 - -0.0 2,854,539 - IAI46_13375 0.19 -0.0 2,854,571 + IAI46_13375 0.20 +1.9 2,854,572 - IAI46_13375 0.20 -0.3 2,854,574 - IAI46_13375 0.20 -0.6
Or see this region's nucleotide sequence