Strain Fitness in Serratia liquefaciens MT49 around IAI46_12480

Experiment: Cadmium acetate 40 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_12475 and IAI46_12480 are separated by 40 nucleotidesIAI46_12480 and IAI46_12485 overlap by 7 nucleotides IAI46_12475: IAI46_12475 - MFS transporter, at 2,651,165 to 2,652,373 _12475 IAI46_12480: IAI46_12480 - HoxN/HupN/NixA family nickel/cobalt transporter, at 2,652,414 to 2,653,445 _12480 IAI46_12485: IAI46_12485 - carbamoyltransferase HypF, at 2,653,439 to 2,655,751 _12485 Position (kb) 2652 2653 2654Strain fitness (log2 ratio) -1 0 1at 2651.429 kb on - strand, within IAI46_12475at 2651.448 kb on + strand, within IAI46_12475at 2651.461 kb on + strand, within IAI46_12475at 2651.489 kb on - strand, within IAI46_12475at 2651.535 kb on + strand, within IAI46_12475at 2651.535 kb on + strand, within IAI46_12475at 2651.536 kb on - strand, within IAI46_12475at 2651.641 kb on - strand, within IAI46_12475at 2651.854 kb on + strand, within IAI46_12475at 2651.886 kb on + strand, within IAI46_12475at 2651.886 kb on + strand, within IAI46_12475at 2652.019 kb on - strand, within IAI46_12475at 2652.062 kb on + strand, within IAI46_12475at 2652.139 kb on + strand, within IAI46_12475at 2652.140 kb on - strand, within IAI46_12475at 2652.559 kb on - strand, within IAI46_12480at 2652.652 kb on + strand, within IAI46_12480at 2652.653 kb on - strand, within IAI46_12480at 2652.671 kb on + strand, within IAI46_12480at 2652.672 kb on - strand, within IAI46_12480at 2652.791 kb on + strand, within IAI46_12480at 2652.792 kb on - strand, within IAI46_12480at 2652.792 kb on - strand, within IAI46_12480at 2652.855 kb on + strand, within IAI46_12480at 2652.872 kb on - strand, within IAI46_12480at 2652.872 kb on - strand, within IAI46_12480at 2652.887 kb on + strand, within IAI46_12480at 2652.888 kb on - strand, within IAI46_12480at 2652.957 kb on + strand, within IAI46_12480at 2653.053 kb on + strand, within IAI46_12480at 2653.448 kb on + strandat 2653.448 kb on + strandat 2653.448 kb on + strandat 2653.449 kb on - strandat 2653.449 kb on - strandat 2653.605 kb on - strandat 2653.654 kb on + strandat 2654.391 kb on + strand, within IAI46_12485at 2654.437 kb on + strand, within IAI46_12485at 2654.440 kb on - strand, within IAI46_12485

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
remove
2,651,429 - IAI46_12475 0.22 -0.1
2,651,448 + IAI46_12475 0.23 +0.9
2,651,461 + IAI46_12475 0.24 +0.1
2,651,489 - IAI46_12475 0.27 -1.7
2,651,535 + IAI46_12475 0.31 +0.7
2,651,535 + IAI46_12475 0.31 +1.1
2,651,536 - IAI46_12475 0.31 -0.0
2,651,641 - IAI46_12475 0.39 -0.0
2,651,854 + IAI46_12475 0.57 +0.1
2,651,886 + IAI46_12475 0.60 +1.0
2,651,886 + IAI46_12475 0.60 -0.5
2,652,019 - IAI46_12475 0.71 -0.6
2,652,062 + IAI46_12475 0.74 +0.2
2,652,139 + IAI46_12475 0.81 -0.3
2,652,140 - IAI46_12475 0.81 +0.8
2,652,559 - IAI46_12480 0.14 -1.3
2,652,652 + IAI46_12480 0.23 +0.3
2,652,653 - IAI46_12480 0.23 +1.1
2,652,671 + IAI46_12480 0.25 +1.0
2,652,672 - IAI46_12480 0.25 -0.9
2,652,791 + IAI46_12480 0.37 +0.2
2,652,792 - IAI46_12480 0.37 -0.0
2,652,792 - IAI46_12480 0.37 -0.3
2,652,855 + IAI46_12480 0.43 +1.1
2,652,872 - IAI46_12480 0.44 -1.1
2,652,872 - IAI46_12480 0.44 -0.2
2,652,887 + IAI46_12480 0.46 +0.2
2,652,888 - IAI46_12480 0.46 +0.1
2,652,957 + IAI46_12480 0.53 -1.3
2,653,053 + IAI46_12480 0.62 +0.9
2,653,448 + -1.0
2,653,448 + +0.5
2,653,448 + -0.4
2,653,449 - -1.0
2,653,449 - -0.4
2,653,605 - +0.8
2,653,654 + +0.6
2,654,391 + IAI46_12485 0.41 -0.0
2,654,437 + IAI46_12485 0.43 +0.6
2,654,440 - IAI46_12485 0.43 -0.7

Or see this region's nucleotide sequence