Strain Fitness in Serratia liquefaciens MT49 around IAI46_12415

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12410 and IAI46_12415 are separated by 2 nucleotidesIAI46_12415 and IAI46_12420 are separated by 34 nucleotides IAI46_12410: IAI46_12410 - SDR family NAD(P)-dependent oxidoreductase, at 2,636,592 to 2,637,305 _12410 IAI46_12415: IAI46_12415 - GMC family oxidoreductase N-terminal domain-containing protein, at 2,637,308 to 2,638,954 _12415 IAI46_12420: IAI46_12420 - aldehyde dehydrogenase family protein, at 2,638,989 to 2,640,506 _12420 Position (kb) 2637 2638 2639Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2636.534 kb on - strandat 2636.549 kb on + strandat 2636.593 kb on + strandat 2636.776 kb on + strand, within IAI46_12410at 2637.220 kb on - strand, within IAI46_12410at 2637.220 kb on - strand, within IAI46_12410at 2637.356 kb on - strandat 2637.544 kb on + strand, within IAI46_12415at 2637.772 kb on - strand, within IAI46_12415at 2637.982 kb on + strand, within IAI46_12415at 2637.982 kb on + strand, within IAI46_12415at 2637.983 kb on - strand, within IAI46_12415at 2638.215 kb on + strand, within IAI46_12415at 2638.319 kb on + strand, within IAI46_12415at 2638.319 kb on + strand, within IAI46_12415at 2638.414 kb on + strand, within IAI46_12415at 2638.536 kb on + strand, within IAI46_12415at 2638.537 kb on - strand, within IAI46_12415at 2638.550 kb on - strand, within IAI46_12415at 2638.552 kb on + strand, within IAI46_12415at 2638.595 kb on - strand, within IAI46_12415at 2638.793 kb on - strandat 2638.943 kb on - strandat 2639.946 kb on - strand, within IAI46_12420

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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2,636,534 - +1.6
2,636,549 + +0.4
2,636,593 + -0.1
2,636,776 + IAI46_12410 0.26 +0.3
2,637,220 - IAI46_12410 0.88 -2.0
2,637,220 - IAI46_12410 0.88 -0.9
2,637,356 - +0.7
2,637,544 + IAI46_12415 0.14 -0.0
2,637,772 - IAI46_12415 0.28 -0.4
2,637,982 + IAI46_12415 0.41 +0.6
2,637,982 + IAI46_12415 0.41 +1.8
2,637,983 - IAI46_12415 0.41 +0.7
2,638,215 + IAI46_12415 0.55 +0.3
2,638,319 + IAI46_12415 0.61 +1.1
2,638,319 + IAI46_12415 0.61 +0.1
2,638,414 + IAI46_12415 0.67 +1.0
2,638,536 + IAI46_12415 0.75 +0.1
2,638,537 - IAI46_12415 0.75 -1.0
2,638,550 - IAI46_12415 0.75 -1.0
2,638,552 + IAI46_12415 0.76 +0.1
2,638,595 - IAI46_12415 0.78 -0.5
2,638,793 - -2.8
2,638,943 - +0.1
2,639,946 - IAI46_12420 0.63 -0.9

Or see this region's nucleotide sequence