Strain Fitness in Serratia liquefaciens MT49 around IAI46_12390

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12380 and IAI46_12385 overlap by 23 nucleotidesIAI46_12385 and IAI46_12390 are separated by 133 nucleotidesIAI46_12390 and IAI46_12395 are separated by 201 nucleotides IAI46_12380: IAI46_12380 - carboxymuconolactone decarboxylase family protein, at 2,629,729 to 2,630,493 _12380 IAI46_12385: IAI46_12385 - cupin domain-containing protein, at 2,630,471 to 2,630,950 _12385 IAI46_12390: IAI46_12390 - heavy metal response regulator transcription factor, at 2,631,084 to 2,631,761 _12390 IAI46_12395: IAI46_12395 - alpha/beta hydrolase, at 2,631,963 to 2,633,015 _12395 Position (kb) 2631 2632Strain fitness (log2 ratio) -2 -1 0 1 2at 2630.304 kb on + strand, within IAI46_12380at 2630.635 kb on + strand, within IAI46_12385at 2630.765 kb on - strand, within IAI46_12385at 2630.908 kb on + strandat 2630.909 kb on - strandat 2630.909 kb on - strandat 2630.945 kb on + strandat 2630.951 kb on - strandat 2630.959 kb on - strandat 2631.104 kb on + strandat 2631.105 kb on - strandat 2631.305 kb on + strand, within IAI46_12390at 2631.323 kb on + strand, within IAI46_12390at 2631.359 kb on + strand, within IAI46_12390at 2631.386 kb on + strand, within IAI46_12390at 2631.390 kb on - strand, within IAI46_12390at 2631.420 kb on + strand, within IAI46_12390at 2631.472 kb on + strand, within IAI46_12390at 2631.540 kb on + strand, within IAI46_12390at 2631.634 kb on + strand, within IAI46_12390at 2631.646 kb on + strand, within IAI46_12390at 2631.750 kb on + strandat 2631.831 kb on + strandat 2631.895 kb on + strandat 2632.218 kb on - strand, within IAI46_12395at 2632.391 kb on + strand, within IAI46_12395at 2632.507 kb on + strand, within IAI46_12395at 2632.636 kb on - strand, within IAI46_12395at 2632.754 kb on + strand, within IAI46_12395at 2632.755 kb on - strand, within IAI46_12395at 2632.755 kb on - strand, within IAI46_12395

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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2,630,304 + IAI46_12380 0.75 +0.6
2,630,635 + IAI46_12385 0.34 -0.7
2,630,765 - IAI46_12385 0.61 -0.5
2,630,908 + -0.7
2,630,909 - +0.3
2,630,909 - +0.5
2,630,945 + +1.1
2,630,951 - +1.3
2,630,959 - +1.0
2,631,104 + -0.9
2,631,105 - -2.7
2,631,305 + IAI46_12390 0.33 +0.6
2,631,323 + IAI46_12390 0.35 -1.9
2,631,359 + IAI46_12390 0.41 +0.1
2,631,386 + IAI46_12390 0.45 -2.2
2,631,390 - IAI46_12390 0.45 +1.9
2,631,420 + IAI46_12390 0.50 -1.0
2,631,472 + IAI46_12390 0.57 -1.4
2,631,540 + IAI46_12390 0.67 -0.4
2,631,634 + IAI46_12390 0.81 -0.5
2,631,646 + IAI46_12390 0.83 -0.7
2,631,750 + -0.8
2,631,831 + -0.4
2,631,895 + +0.0
2,632,218 - IAI46_12395 0.24 +0.9
2,632,391 + IAI46_12395 0.41 +0.8
2,632,507 + IAI46_12395 0.52 +0.3
2,632,636 - IAI46_12395 0.64 -0.1
2,632,754 + IAI46_12395 0.75 +0.6
2,632,755 - IAI46_12395 0.75 +0.9
2,632,755 - IAI46_12395 0.75 -0.8

Or see this region's nucleotide sequence