Strain Fitness in Serratia liquefaciens MT49 around IAI46_11400

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11390 and IAI46_11395 are separated by 106 nucleotidesIAI46_11395 and IAI46_11400 are separated by 73 nucleotidesIAI46_11400 and IAI46_11405 are separated by 103 nucleotides IAI46_11390: IAI46_11390 - 4-hydroxy-tetrahydrodipicolinate synthase, at 2,406,205 to 2,407,089 _11390 IAI46_11395: IAI46_11395 - hypothetical protein, at 2,407,196 to 2,407,381 _11395 IAI46_11400: IAI46_11400 - DUF3811 domain-containing protein, at 2,407,455 to 2,407,721 _11400 IAI46_11405: IAI46_11405 - HD domain-containing protein, at 2,407,825 to 2,408,490 _11405 Position (kb) 2407 2408Strain fitness (log2 ratio) -2 -1 0 1at 2406.532 kb on - strand, within IAI46_11390at 2406.548 kb on - strand, within IAI46_11390at 2406.693 kb on - strand, within IAI46_11390at 2406.737 kb on + strand, within IAI46_11390at 2406.770 kb on + strand, within IAI46_11390at 2406.771 kb on - strand, within IAI46_11390at 2406.771 kb on - strand, within IAI46_11390at 2406.771 kb on - strand, within IAI46_11390at 2406.954 kb on + strand, within IAI46_11390at 2407.044 kb on + strandat 2407.090 kb on - strandat 2407.131 kb on + strandat 2407.131 kb on + strandat 2407.132 kb on - strandat 2407.132 kb on - strandat 2407.132 kb on - strandat 2407.153 kb on + strandat 2407.323 kb on + strand, within IAI46_11395at 2407.386 kb on - strandat 2407.611 kb on - strand, within IAI46_11400at 2407.757 kb on + strandat 2407.827 kb on - strandat 2407.931 kb on - strand, within IAI46_11405at 2407.974 kb on - strand, within IAI46_11405at 2408.009 kb on + strand, within IAI46_11405at 2408.010 kb on - strand, within IAI46_11405at 2408.039 kb on + strand, within IAI46_11405at 2408.039 kb on + strand, within IAI46_11405at 2408.039 kb on + strand, within IAI46_11405at 2408.039 kb on + strand, within IAI46_11405at 2408.578 kb on - strandat 2408.632 kb on + strandat 2408.633 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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2,406,532 - IAI46_11390 0.37 -0.2
2,406,548 - IAI46_11390 0.39 -0.5
2,406,693 - IAI46_11390 0.55 -2.2
2,406,737 + IAI46_11390 0.60 +0.8
2,406,770 + IAI46_11390 0.64 +1.5
2,406,771 - IAI46_11390 0.64 -0.4
2,406,771 - IAI46_11390 0.64 +0.3
2,406,771 - IAI46_11390 0.64 -0.0
2,406,954 + IAI46_11390 0.85 -0.9
2,407,044 + +0.0
2,407,090 - -0.6
2,407,131 + -0.2
2,407,131 + +1.4
2,407,132 - +1.1
2,407,132 - -0.9
2,407,132 - -0.3
2,407,153 + -0.1
2,407,323 + IAI46_11395 0.68 +0.1
2,407,386 - -0.2
2,407,611 - IAI46_11400 0.58 -0.2
2,407,757 + +0.4
2,407,827 - +0.7
2,407,931 - IAI46_11405 0.16 +0.8
2,407,974 - IAI46_11405 0.22 +0.9
2,408,009 + IAI46_11405 0.28 -0.0
2,408,010 - IAI46_11405 0.28 +0.2
2,408,039 + IAI46_11405 0.32 -0.1
2,408,039 + IAI46_11405 0.32 -1.2
2,408,039 + IAI46_11405 0.32 +0.6
2,408,039 + IAI46_11405 0.32 +0.1
2,408,578 - -1.8
2,408,632 + +1.1
2,408,633 - -0.6

Or see this region's nucleotide sequence