Strain Fitness in Serratia liquefaciens MT49 around IAI46_09760

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09755 and IAI46_09760 are separated by 11 nucleotidesIAI46_09760 and IAI46_09765 are separated by 141 nucleotidesIAI46_09765 and IAI46_09770 are separated by 16 nucleotidesIAI46_09770 and IAI46_09775 are separated by 11 nucleotides IAI46_09755: IAI46_09755 - 23S rRNA pseudouridine(955/2504/2580) synthase RluC, at 2,068,348 to 2,069,310 _09755 IAI46_09760: IAI46_09760 - septum formation inhibitor Maf, at 2,069,322 to 2,069,903 _09760 IAI46_09765: IAI46_09765 - 23S rRNA accumulation protein YceD, at 2,070,045 to 2,070,566 _09765 IAI46_09770: IAI46_09770 - 50S ribosomal protein L32, at 2,070,583 to 2,070,750 _09770 IAI46_09775: IAI46_09775 - phosphate acyltransferase PlsX, at 2,070,762 to 2,071,796 _09775 Position (kb) 2069 2070Strain fitness (log2 ratio) -2 -1 0 1 2at 2068.335 kb on - strandat 2068.497 kb on + strand, within IAI46_09755at 2068.498 kb on - strand, within IAI46_09755at 2068.498 kb on - strand, within IAI46_09755at 2068.519 kb on + strand, within IAI46_09755at 2068.786 kb on - strand, within IAI46_09755at 2068.873 kb on + strand, within IAI46_09755at 2068.919 kb on + strand, within IAI46_09755at 2068.919 kb on + strand, within IAI46_09755at 2069.238 kb on + strandat 2069.313 kb on - strandat 2069.492 kb on - strand, within IAI46_09760at 2069.579 kb on - strand, within IAI46_09760at 2069.726 kb on - strand, within IAI46_09760at 2069.831 kb on + strand, within IAI46_09760at 2069.893 kb on - strandat 2069.928 kb on - strandat 2069.972 kb on + strandat 2069.973 kb on - strandat 2070.014 kb on + strandat 2070.030 kb on + strandat 2070.030 kb on + strandat 2070.082 kb on + strandat 2070.306 kb on + strand, within IAI46_09765at 2070.568 kb on + strandat 2070.575 kb on + strandat 2070.772 kb on + strandat 2070.851 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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2,068,335 - -0.0
2,068,497 + IAI46_09755 0.15 +1.9
2,068,498 - IAI46_09755 0.16 +0.5
2,068,498 - IAI46_09755 0.16 +0.4
2,068,519 + IAI46_09755 0.18 +0.5
2,068,786 - IAI46_09755 0.45 +0.3
2,068,873 + IAI46_09755 0.55 +1.6
2,068,919 + IAI46_09755 0.59 -0.2
2,068,919 + IAI46_09755 0.59 -0.0
2,069,238 + +0.3
2,069,313 - +0.3
2,069,492 - IAI46_09760 0.29 +0.4
2,069,579 - IAI46_09760 0.44 -0.3
2,069,726 - IAI46_09760 0.69 +0.2
2,069,831 + IAI46_09760 0.87 +0.2
2,069,893 - -1.6
2,069,928 - -0.6
2,069,972 + -1.3
2,069,973 - -0.1
2,070,014 + -1.8
2,070,030 + +1.1
2,070,030 + -0.5
2,070,082 + +0.5
2,070,306 + IAI46_09765 0.50 -1.1
2,070,568 + -1.5
2,070,575 + -0.5
2,070,772 + -0.5
2,070,851 + +0.0

Or see this region's nucleotide sequence