Strain Fitness in Serratia liquefaciens MT49 around IAI46_06030

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06025 and IAI46_06030 are separated by 196 nucleotidesIAI46_06030 and IAI46_06035 are separated by 104 nucleotidesIAI46_06035 and IAI46_06040 are separated by 19 nucleotidesIAI46_06040 and IAI46_06045 are separated by 40 nucleotidesIAI46_06045 and IAI46_06050 are separated by 45 nucleotidesIAI46_06050 and IAI46_06055 are separated by 29 nucleotidesIAI46_06055 and IAI46_06060 are separated by 8 nucleotides IAI46_06025: IAI46_06025 - tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB, at 1,289,519 to 1,290,943 _06025 IAI46_06030: IAI46_06030 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase, at 1,291,140 to 1,292,321 _06030 IAI46_06035: IAI46_06035 - tRNA-Gln, at 1,292,426 to 1,292,500 _06035 IAI46_06040: IAI46_06040 - tRNA-Met, at 1,292,520 to 1,292,596 _06040 IAI46_06045: IAI46_06045 - tRNA-Gln, at 1,292,637 to 1,292,711 _06045 IAI46_06050: IAI46_06050 - tRNA-Gln, at 1,292,757 to 1,292,831 _06050 IAI46_06055: IAI46_06055 - tRNA-Leu, at 1,292,861 to 1,292,945 _06055 IAI46_06060: IAI46_06060 - tRNA-Met, at 1,292,954 to 1,293,030 _06060 Position (kb) 1291 1292 1293Strain fitness (log2 ratio) -2 -1 0 1 2at 1290.203 kb on - strand, within IAI46_06025at 1290.439 kb on + strand, within IAI46_06025at 1290.439 kb on + strand, within IAI46_06025at 1290.441 kb on + strand, within IAI46_06025at 1290.441 kb on + strand, within IAI46_06025at 1290.460 kb on + strand, within IAI46_06025at 1290.460 kb on + strand, within IAI46_06025at 1290.461 kb on - strand, within IAI46_06025at 1290.465 kb on + strand, within IAI46_06025at 1290.465 kb on + strand, within IAI46_06025at 1290.465 kb on + strand, within IAI46_06025at 1290.466 kb on - strand, within IAI46_06025at 1290.466 kb on - strand, within IAI46_06025at 1290.755 kb on + strand, within IAI46_06025at 1290.802 kb on + strandat 1290.802 kb on + strandat 1290.803 kb on - strandat 1290.870 kb on - strandat 1290.870 kb on - strandat 1290.870 kb on - strandat 1290.894 kb on + strandat 1290.925 kb on + strandat 1290.926 kb on - strandat 1290.926 kb on - strandat 1290.929 kb on + strandat 1290.955 kb on + strandat 1290.956 kb on - strandat 1291.000 kb on + strandat 1291.000 kb on + strandat 1291.076 kb on + strandat 1291.139 kb on + strandat 1292.320 kb on - strandat 1292.334 kb on - strandat 1292.363 kb on - strandat 1292.528 kb on - strand, within IAI46_06040at 1292.560 kb on - strand, within IAI46_06040at 1292.560 kb on - strand, within IAI46_06040at 1292.636 kb on - strandat 1293.184 kb on + strandat 1293.184 kb on + strandat 1293.184 kb on + strandat 1293.184 kb on + strandat 1293.248 kb on + strandat 1293.248 kb on + strandat 1293.249 kb on - strandat 1293.250 kb on + strandat 1293.250 kb on + strandat 1293.250 kb on + strandat 1293.251 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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1,290,203 - IAI46_06025 0.48 -1.0
1,290,439 + IAI46_06025 0.65 -0.8
1,290,439 + IAI46_06025 0.65 +0.5
1,290,441 + IAI46_06025 0.65 -0.4
1,290,441 + IAI46_06025 0.65 +0.6
1,290,460 + IAI46_06025 0.66 +0.3
1,290,460 + IAI46_06025 0.66 -0.5
1,290,461 - IAI46_06025 0.66 +1.1
1,290,465 + IAI46_06025 0.66 -0.4
1,290,465 + IAI46_06025 0.66 +1.9
1,290,465 + IAI46_06025 0.66 -0.3
1,290,466 - IAI46_06025 0.66 -0.5
1,290,466 - IAI46_06025 0.66 +0.2
1,290,755 + IAI46_06025 0.87 -0.2
1,290,802 + +0.9
1,290,802 + -0.2
1,290,803 - -0.6
1,290,870 - -0.3
1,290,870 - -0.4
1,290,870 - -0.2
1,290,894 + -0.4
1,290,925 + -0.2
1,290,926 - +0.2
1,290,926 - +0.8
1,290,929 + -0.6
1,290,955 + -0.4
1,290,956 - +0.1
1,291,000 + +0.5
1,291,000 + +0.0
1,291,076 + +0.5
1,291,139 + -0.5
1,292,320 - +0.1
1,292,334 - -2.4
1,292,363 - +0.9
1,292,528 - IAI46_06040 0.10 -0.1
1,292,560 - IAI46_06040 0.52 -0.4
1,292,560 - IAI46_06040 0.52 +0.1
1,292,636 - +0.8
1,293,184 + +0.3
1,293,184 + +0.2
1,293,184 + -0.4
1,293,184 + +0.4
1,293,248 + -0.4
1,293,248 + -0.1
1,293,249 - -0.5
1,293,250 + +0.7
1,293,250 + +0.1
1,293,250 + -0.4
1,293,251 - +0.1

Or see this region's nucleotide sequence