Strain Fitness in Serratia liquefaciens MT49 around IAI46_06010

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06000 and IAI46_06005 are separated by 7 nucleotidesIAI46_06005 and IAI46_06010 are separated by 84 nucleotidesIAI46_06010 and IAI46_06015 overlap by 4 nucleotides IAI46_06000: IAI46_06000 - apolipoprotein N-acyltransferase, at 1,284,812 to 1,286,341 _06000 IAI46_06005: IAI46_06005 - CNNM family magnesium/cobalt transport protein CorC, at 1,286,349 to 1,287,227 _06005 IAI46_06010: IAI46_06010 - rRNA maturation RNase YbeY, at 1,287,312 to 1,287,785 _06010 IAI46_06015: IAI46_06015 - PhoH family protein, at 1,287,782 to 1,288,837 _06015 Position (kb) 1287 1288Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1286.409 kb on - strandat 1286.409 kb on - strandat 1286.409 kb on - strandat 1286.409 kb on - strandat 1286.436 kb on - strandat 1286.439 kb on + strand, within IAI46_06005at 1286.592 kb on - strand, within IAI46_06005at 1286.593 kb on + strand, within IAI46_06005at 1286.593 kb on + strand, within IAI46_06005at 1286.593 kb on + strand, within IAI46_06005at 1286.593 kb on + strand, within IAI46_06005at 1286.594 kb on - strand, within IAI46_06005at 1286.594 kb on - strand, within IAI46_06005at 1286.594 kb on - strand, within IAI46_06005at 1286.594 kb on - strand, within IAI46_06005at 1286.594 kb on - strand, within IAI46_06005at 1286.597 kb on + strand, within IAI46_06005at 1286.597 kb on + strand, within IAI46_06005at 1286.597 kb on + strand, within IAI46_06005at 1286.598 kb on - strand, within IAI46_06005at 1286.598 kb on - strand, within IAI46_06005at 1286.598 kb on - strand, within IAI46_06005at 1286.679 kb on - strand, within IAI46_06005at 1286.900 kb on + strand, within IAI46_06005at 1286.975 kb on + strand, within IAI46_06005at 1287.014 kb on + strand, within IAI46_06005at 1287.164 kb on + strandat 1287.164 kb on + strandat 1287.165 kb on - strandat 1287.165 kb on - strandat 1287.165 kb on - strandat 1287.171 kb on - strandat 1287.239 kb on + strandat 1287.240 kb on - strandat 1287.242 kb on + strandat 1287.242 kb on + strandat 1287.243 kb on - strandat 1287.338 kb on - strandat 1287.839 kb on - strandat 1287.839 kb on - strandat 1288.017 kb on - strand, within IAI46_06015at 1288.142 kb on - strand, within IAI46_06015at 1288.154 kb on - strand, within IAI46_06015at 1288.176 kb on - strand, within IAI46_06015at 1288.240 kb on - strand, within IAI46_06015at 1288.255 kb on - strand, within IAI46_06015at 1288.255 kb on - strand, within IAI46_06015at 1288.456 kb on - strand, within IAI46_06015at 1288.639 kb on - strand, within IAI46_06015

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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1,286,409 - -1.3
1,286,409 - -3.4
1,286,409 - -2.8
1,286,409 - -3.1
1,286,436 - -2.3
1,286,439 + IAI46_06005 0.10 -2.9
1,286,592 - IAI46_06005 0.28 -2.8
1,286,593 + IAI46_06005 0.28 -1.8
1,286,593 + IAI46_06005 0.28 -2.2
1,286,593 + IAI46_06005 0.28 -2.3
1,286,593 + IAI46_06005 0.28 -0.9
1,286,594 - IAI46_06005 0.28 -2.8
1,286,594 - IAI46_06005 0.28 -4.3
1,286,594 - IAI46_06005 0.28 -3.7
1,286,594 - IAI46_06005 0.28 -3.1
1,286,594 - IAI46_06005 0.28 -1.9
1,286,597 + IAI46_06005 0.28 -1.4
1,286,597 + IAI46_06005 0.28 -2.8
1,286,597 + IAI46_06005 0.28 -2.7
1,286,598 - IAI46_06005 0.28 -0.1
1,286,598 - IAI46_06005 0.28 -0.3
1,286,598 - IAI46_06005 0.28 -0.7
1,286,679 - IAI46_06005 0.38 -2.0
1,286,900 + IAI46_06005 0.63 -2.7
1,286,975 + IAI46_06005 0.71 -2.8
1,287,014 + IAI46_06005 0.76 -2.8
1,287,164 + +0.3
1,287,164 + -0.4
1,287,165 - -3.8
1,287,165 - -4.0
1,287,165 - -2.5
1,287,171 - -2.2
1,287,239 + -2.3
1,287,240 - -3.8
1,287,242 + -1.8
1,287,242 + -3.8
1,287,243 - -1.8
1,287,338 - -0.2
1,287,839 - +0.7
1,287,839 - +1.0
1,288,017 - IAI46_06015 0.22 +2.2
1,288,142 - IAI46_06015 0.34 +0.0
1,288,154 - IAI46_06015 0.35 +1.7
1,288,176 - IAI46_06015 0.37 -0.7
1,288,240 - IAI46_06015 0.43 +0.6
1,288,255 - IAI46_06015 0.45 +0.1
1,288,255 - IAI46_06015 0.45 +0.9
1,288,456 - IAI46_06015 0.64 -0.3
1,288,639 - IAI46_06015 0.81 -0.2

Or see this region's nucleotide sequence