Strain Fitness in Serratia liquefaciens MT49 around IAI46_04460

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04455 and IAI46_04460 are separated by 459 nucleotidesIAI46_04460 and IAI46_04465 are separated by 101 nucleotides IAI46_04455: IAI46_04455 - DUF1471 domain-containing protein, at 953,805 to 954,059 _04455 IAI46_04460: IAI46_04460 - condensation protein, at 954,519 to 955,865 _04460 IAI46_04465: IAI46_04465 - amino acid adenylation domain-containing protein, at 955,967 to 959,062 _04465 Position (kb) 954 955 956Strain fitness (log2 ratio) -2 -1 0 1at 953.577 kb on + strandat 953.578 kb on - strandat 953.666 kb on - strandat 953.668 kb on - strandat 953.673 kb on + strandat 953.673 kb on + strandat 953.673 kb on + strandat 953.673 kb on + strandat 953.674 kb on - strandat 953.674 kb on - strandat 953.677 kb on + strandat 953.677 kb on + strandat 953.677 kb on + strandat 953.715 kb on + strandat 953.751 kb on + strandat 953.751 kb on + strandat 953.751 kb on + strandat 953.751 kb on + strandat 953.752 kb on - strandat 953.752 kb on - strandat 953.790 kb on + strandat 953.790 kb on + strandat 953.791 kb on - strandat 953.802 kb on + strandat 953.802 kb on + strandat 953.803 kb on - strandat 953.805 kb on - strandat 953.805 kb on - strandat 953.816 kb on + strandat 953.820 kb on + strandat 953.997 kb on + strand, within IAI46_04455at 954.005 kb on + strand, within IAI46_04455at 954.051 kb on + strandat 954.057 kb on + strandat 954.090 kb on + strandat 954.134 kb on + strandat 954.156 kb on - strandat 954.156 kb on - strandat 954.334 kb on + strandat 954.334 kb on + strandat 954.334 kb on + strandat 954.335 kb on - strandat 954.375 kb on + strandat 954.375 kb on + strandat 954.375 kb on + strandat 954.375 kb on + strandat 954.376 kb on - strandat 954.376 kb on - strandat 954.376 kb on - strandat 954.376 kb on - strandat 954.378 kb on + strandat 954.378 kb on + strandat 954.379 kb on - strandat 954.379 kb on - strandat 954.431 kb on + strandat 954.432 kb on - strandat 954.495 kb on + strandat 954.511 kb on + strandat 954.512 kb on - strandat 954.515 kb on + strandat 954.516 kb on - strandat 954.516 kb on - strandat 954.516 kb on - strandat 954.516 kb on - strandat 954.591 kb on - strandat 954.591 kb on - strandat 954.640 kb on + strandat 954.640 kb on + strandat 954.641 kb on - strandat 954.793 kb on + strand, within IAI46_04460at 954.793 kb on + strand, within IAI46_04460at 954.794 kb on + strand, within IAI46_04460at 954.830 kb on + strand, within IAI46_04460at 954.871 kb on + strand, within IAI46_04460at 954.871 kb on + strand, within IAI46_04460at 954.933 kb on + strand, within IAI46_04460at 954.934 kb on - strand, within IAI46_04460at 954.950 kb on + strand, within IAI46_04460at 954.951 kb on - strand, within IAI46_04460at 954.951 kb on - strand, within IAI46_04460at 954.951 kb on - strand, within IAI46_04460at 955.005 kb on + strand, within IAI46_04460at 955.006 kb on - strand, within IAI46_04460at 955.006 kb on - strand, within IAI46_04460at 955.007 kb on + strand, within IAI46_04460at 955.007 kb on + strand, within IAI46_04460at 955.007 kb on + strand, within IAI46_04460at 955.083 kb on + strand, within IAI46_04460at 955.084 kb on - strand, within IAI46_04460at 955.131 kb on + strand, within IAI46_04460at 955.131 kb on + strand, within IAI46_04460at 955.132 kb on - strand, within IAI46_04460at 955.182 kb on + strand, within IAI46_04460at 955.182 kb on + strand, within IAI46_04460at 955.183 kb on - strand, within IAI46_04460at 955.259 kb on + strand, within IAI46_04460at 955.260 kb on - strand, within IAI46_04460at 955.340 kb on + strand, within IAI46_04460at 955.341 kb on - strand, within IAI46_04460at 955.341 kb on - strand, within IAI46_04460at 955.404 kb on - strand, within IAI46_04460at 955.424 kb on + strand, within IAI46_04460at 955.425 kb on - strand, within IAI46_04460at 955.425 kb on - strand, within IAI46_04460at 955.592 kb on + strand, within IAI46_04460at 955.640 kb on + strand, within IAI46_04460at 955.640 kb on + strand, within IAI46_04460at 955.641 kb on - strand, within IAI46_04460at 955.651 kb on + strand, within IAI46_04460at 955.738 kb on - strandat 955.738 kb on - strandat 955.773 kb on + strandat 955.773 kb on + strandat 955.774 kb on - strandat 955.883 kb on + strandat 955.884 kb on - strandat 955.884 kb on - strandat 955.884 kb on - strandat 955.910 kb on + strandat 955.911 kb on - strandat 955.912 kb on + strandat 955.912 kb on + strandat 955.913 kb on - strandat 955.913 kb on - strandat 955.931 kb on - strandat 955.955 kb on - strandat 956.015 kb on + strandat 956.054 kb on - strandat 956.341 kb on + strand, within IAI46_04465at 956.341 kb on + strand, within IAI46_04465at 956.341 kb on + strand, within IAI46_04465at 956.341 kb on + strand, within IAI46_04465at 956.341 kb on + strand, within IAI46_04465at 956.342 kb on - strand, within IAI46_04465at 956.342 kb on - strand, within IAI46_04465at 956.342 kb on - strand, within IAI46_04465at 956.412 kb on + strand, within IAI46_04465at 956.413 kb on - strand, within IAI46_04465at 956.462 kb on + strand, within IAI46_04465at 956.479 kb on + strand, within IAI46_04465at 956.479 kb on + strand, within IAI46_04465at 956.480 kb on - strand, within IAI46_04465at 956.480 kb on - strand, within IAI46_04465at 956.547 kb on + strand, within IAI46_04465at 956.547 kb on + strand, within IAI46_04465at 956.576 kb on - strand, within IAI46_04465at 956.592 kb on + strand, within IAI46_04465at 956.592 kb on + strand, within IAI46_04465at 956.592 kb on + strand, within IAI46_04465at 956.593 kb on - strand, within IAI46_04465at 956.593 kb on - strand, within IAI46_04465at 956.595 kb on + strand, within IAI46_04465at 956.595 kb on + strand, within IAI46_04465at 956.596 kb on - strand, within IAI46_04465at 956.612 kb on - strand, within IAI46_04465at 956.672 kb on + strand, within IAI46_04465at 956.691 kb on + strand, within IAI46_04465at 956.691 kb on + strand, within IAI46_04465at 956.773 kb on + strand, within IAI46_04465at 956.774 kb on - strand, within IAI46_04465at 956.774 kb on - strand, within IAI46_04465at 956.778 kb on + strand, within IAI46_04465at 956.779 kb on - strand, within IAI46_04465at 956.779 kb on - strand, within IAI46_04465at 956.805 kb on + strand, within IAI46_04465at 956.805 kb on + strand, within IAI46_04465at 956.806 kb on - strand, within IAI46_04465at 956.806 kb on - strand, within IAI46_04465at 956.806 kb on - strand, within IAI46_04465

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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953,577 + +0.7
953,578 - +0.1
953,666 - +0.4
953,668 - +1.4
953,673 + +1.2
953,673 + +0.7
953,673 + +0.7
953,673 + +0.5
953,674 - +0.3
953,674 - +0.1
953,677 + -0.0
953,677 + +0.9
953,677 + +0.3
953,715 + -0.7
953,751 + +0.1
953,751 + +0.4
953,751 + +0.1
953,751 + +0.2
953,752 - +0.2
953,752 - +0.2
953,790 + +1.0
953,790 + -0.2
953,791 - +0.0
953,802 + +0.3
953,802 + +0.2
953,803 - -0.5
953,805 - +0.4
953,805 - +0.9
953,816 + +0.0
953,820 + -2.6
953,997 + IAI46_04455 0.75 +0.3
954,005 + IAI46_04455 0.78 -1.1
954,051 + +0.0
954,057 + -0.6
954,090 + +0.4
954,134 + +0.5
954,156 - +0.1
954,156 - +0.3
954,334 + -0.2
954,334 + +0.5
954,334 + +0.8
954,335 - +0.1
954,375 + -1.4
954,375 + +0.1
954,375 + +0.8
954,375 + +0.1
954,376 - -0.0
954,376 - +0.0
954,376 - -0.4
954,376 - -0.0
954,378 + +0.4
954,378 + +0.5
954,379 - -1.6
954,379 - +0.1
954,431 + +0.1
954,432 - +0.7
954,495 + -0.4
954,511 + +0.6
954,512 - +0.5
954,515 + +1.5
954,516 - +1.2
954,516 - +0.0
954,516 - +0.2
954,516 - +0.4
954,591 - +0.4
954,591 - +0.0
954,640 + -0.8
954,640 + +0.3
954,641 - +1.2
954,793 + IAI46_04460 0.20 +0.3
954,793 + IAI46_04460 0.20 +0.9
954,794 + IAI46_04460 0.20 +0.6
954,830 + IAI46_04460 0.23 -0.7
954,871 + IAI46_04460 0.26 -0.6
954,871 + IAI46_04460 0.26 -0.7
954,933 + IAI46_04460 0.31 +1.5
954,934 - IAI46_04460 0.31 -0.4
954,950 + IAI46_04460 0.32 +0.6
954,951 - IAI46_04460 0.32 +0.5
954,951 - IAI46_04460 0.32 -0.1
954,951 - IAI46_04460 0.32 -0.3
955,005 + IAI46_04460 0.36 +0.8
955,006 - IAI46_04460 0.36 +0.1
955,006 - IAI46_04460 0.36 +0.7
955,007 + IAI46_04460 0.36 +0.3
955,007 + IAI46_04460 0.36 +0.5
955,007 + IAI46_04460 0.36 -0.4
955,083 + IAI46_04460 0.42 +0.4
955,084 - IAI46_04460 0.42 +0.1
955,131 + IAI46_04460 0.45 +0.1
955,131 + IAI46_04460 0.45 +0.2
955,132 - IAI46_04460 0.46 +0.8
955,182 + IAI46_04460 0.49 -0.6
955,182 + IAI46_04460 0.49 +0.2
955,183 - IAI46_04460 0.49 -0.2
955,259 + IAI46_04460 0.55 +1.4
955,260 - IAI46_04460 0.55 +0.6
955,340 + IAI46_04460 0.61 +0.4
955,341 - IAI46_04460 0.61 -0.4
955,341 - IAI46_04460 0.61 +1.3
955,404 - IAI46_04460 0.66 -0.2
955,424 + IAI46_04460 0.67 -0.7
955,425 - IAI46_04460 0.67 +0.3
955,425 - IAI46_04460 0.67 +0.5
955,592 + IAI46_04460 0.80 -0.1
955,640 + IAI46_04460 0.83 +0.3
955,640 + IAI46_04460 0.83 +0.5
955,641 - IAI46_04460 0.83 -0.7
955,651 + IAI46_04460 0.84 -0.3
955,738 - +0.0
955,738 - +0.7
955,773 + +0.2
955,773 + +0.7
955,774 - +0.9
955,883 + +0.1
955,884 - -2.2
955,884 - +0.7
955,884 - -0.0
955,910 + +0.5
955,911 - -0.1
955,912 + -1.6
955,912 + +1.0
955,913 - -0.5
955,913 - +0.5
955,931 - +0.4
955,955 - +1.7
956,015 + -1.0
956,054 - +0.5
956,341 + IAI46_04465 0.12 -0.2
956,341 + IAI46_04465 0.12 -0.1
956,341 + IAI46_04465 0.12 +0.8
956,341 + IAI46_04465 0.12 +0.9
956,341 + IAI46_04465 0.12 -0.1
956,342 - IAI46_04465 0.12 -0.5
956,342 - IAI46_04465 0.12 +0.1
956,342 - IAI46_04465 0.12 -0.7
956,412 + IAI46_04465 0.14 +0.2
956,413 - IAI46_04465 0.14 -0.4
956,462 + IAI46_04465 0.16 +0.0
956,479 + IAI46_04465 0.17 -0.0
956,479 + IAI46_04465 0.17 +0.7
956,480 - IAI46_04465 0.17 +0.7
956,480 - IAI46_04465 0.17 -0.4
956,547 + IAI46_04465 0.19 -0.1
956,547 + IAI46_04465 0.19 +1.0
956,576 - IAI46_04465 0.20 -0.4
956,592 + IAI46_04465 0.20 +0.5
956,592 + IAI46_04465 0.20 +0.9
956,592 + IAI46_04465 0.20 +0.5
956,593 - IAI46_04465 0.20 +1.2
956,593 - IAI46_04465 0.20 +0.6
956,595 + IAI46_04465 0.20 +0.4
956,595 + IAI46_04465 0.20 -1.7
956,596 - IAI46_04465 0.20 +0.7
956,612 - IAI46_04465 0.21 -1.2
956,672 + IAI46_04465 0.23 +0.4
956,691 + IAI46_04465 0.23 +1.0
956,691 + IAI46_04465 0.23 +0.6
956,773 + IAI46_04465 0.26 +0.1
956,774 - IAI46_04465 0.26 +0.5
956,774 - IAI46_04465 0.26 +0.1
956,778 + IAI46_04465 0.26 -0.1
956,779 - IAI46_04465 0.26 +0.0
956,779 - IAI46_04465 0.26 -0.0
956,805 + IAI46_04465 0.27 -1.6
956,805 + IAI46_04465 0.27 +0.0
956,806 - IAI46_04465 0.27 +0.6
956,806 - IAI46_04465 0.27 +1.5
956,806 - IAI46_04465 0.27 +1.2

Or see this region's nucleotide sequence