Strain Fitness in Serratia liquefaciens MT49 around IAI46_04090

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04080 and IAI46_04085 overlap by 1 nucleotidesIAI46_04085 and IAI46_04090 overlap by 1 nucleotidesIAI46_04090 and IAI46_04095 overlap by 4 nucleotidesIAI46_04095 and IAI46_04100 overlap by 4 nucleotides IAI46_04080: IAI46_04080 - MMPL family transporter, at 879,276 to 881,582 _04080 IAI46_04085: IAI46_04085 - DUF3261 domain-containing protein, at 881,582 to 882,154 _04085 IAI46_04090: IAI46_04090 - beta-ketoacyl-[acyl-carrier-protein] synthase family protein, at 882,154 to 883,323 _04090 IAI46_04095: IAI46_04095 - hotdog family protein, at 883,320 to 883,793 _04095 IAI46_04100: IAI46_04100 - 3-oxoacyl-ACP reductase FabG, at 883,790 to 884,521 _04100 Position (kb) 882 883 884Strain fitness (log2 ratio) -2 -1 0 1 2at 881.161 kb on - strand, within IAI46_04080at 881.170 kb on - strand, within IAI46_04080at 881.209 kb on - strand, within IAI46_04080at 881.260 kb on + strand, within IAI46_04080at 881.261 kb on - strand, within IAI46_04080at 881.360 kb on + strandat 881.364 kb on + strandat 881.364 kb on + strandat 881.365 kb on - strandat 881.365 kb on - strandat 881.365 kb on - strandat 881.365 kb on - strandat 881.366 kb on + strandat 881.366 kb on + strandat 881.366 kb on + strandat 881.366 kb on + strandat 881.366 kb on + strandat 881.367 kb on - strandat 881.367 kb on - strandat 881.367 kb on - strandat 881.424 kb on - strandat 881.431 kb on + strandat 881.432 kb on - strandat 881.503 kb on + strandat 881.552 kb on - strandat 881.592 kb on + strandat 881.592 kb on + strandat 881.593 kb on - strandat 881.607 kb on + strandat 881.607 kb on + strandat 881.697 kb on + strand, within IAI46_04085at 881.725 kb on + strand, within IAI46_04085at 881.858 kb on + strand, within IAI46_04085at 881.859 kb on - strand, within IAI46_04085at 881.935 kb on + strand, within IAI46_04085at 881.948 kb on + strand, within IAI46_04085at 881.949 kb on - strand, within IAI46_04085at 882.015 kb on + strand, within IAI46_04085at 882.027 kb on - strand, within IAI46_04085at 882.134 kb on - strandat 882.152 kb on + strandat 882.161 kb on - strandat 882.302 kb on + strand, within IAI46_04090at 882.302 kb on + strand, within IAI46_04090at 882.303 kb on - strand, within IAI46_04090at 882.303 kb on - strand, within IAI46_04090at 882.314 kb on + strand, within IAI46_04090at 882.346 kb on - strand, within IAI46_04090at 882.357 kb on + strand, within IAI46_04090at 882.358 kb on - strand, within IAI46_04090at 882.358 kb on - strand, within IAI46_04090at 882.447 kb on + strand, within IAI46_04090at 882.448 kb on - strand, within IAI46_04090at 882.499 kb on + strand, within IAI46_04090at 882.533 kb on - strand, within IAI46_04090at 882.533 kb on - strand, within IAI46_04090at 882.601 kb on + strand, within IAI46_04090at 882.602 kb on - strand, within IAI46_04090at 882.602 kb on - strand, within IAI46_04090at 882.652 kb on - strand, within IAI46_04090at 882.798 kb on + strand, within IAI46_04090at 882.798 kb on + strand, within IAI46_04090at 882.798 kb on + strand, within IAI46_04090at 882.982 kb on + strand, within IAI46_04090at 882.983 kb on - strand, within IAI46_04090at 882.983 kb on - strand, within IAI46_04090at 882.983 kb on - strand, within IAI46_04090at 882.983 kb on - strand, within IAI46_04090at 883.090 kb on - strand, within IAI46_04090at 883.345 kb on - strandat 883.347 kb on + strandat 883.347 kb on + strandat 883.347 kb on + strandat 883.347 kb on + strandat 883.347 kb on + strandat 883.348 kb on - strandat 883.348 kb on - strandat 883.348 kb on - strandat 883.351 kb on + strandat 883.352 kb on - strandat 883.352 kb on - strandat 883.352 kb on - strandat 883.352 kb on - strandat 883.439 kb on + strand, within IAI46_04095at 883.489 kb on - strand, within IAI46_04095at 883.571 kb on + strand, within IAI46_04095at 883.571 kb on + strand, within IAI46_04095at 883.572 kb on - strand, within IAI46_04095at 883.738 kb on - strand, within IAI46_04095at 883.778 kb on - strandat 883.842 kb on + strandat 883.878 kb on + strand, within IAI46_04100at 883.878 kb on + strand, within IAI46_04100at 883.879 kb on - strand, within IAI46_04100at 883.887 kb on - strand, within IAI46_04100at 883.887 kb on - strand, within IAI46_04100at 883.970 kb on - strand, within IAI46_04100at 884.012 kb on - strand, within IAI46_04100at 884.031 kb on - strand, within IAI46_04100at 884.033 kb on + strand, within IAI46_04100at 884.034 kb on - strand, within IAI46_04100at 884.047 kb on + strand, within IAI46_04100at 884.048 kb on - strand, within IAI46_04100at 884.116 kb on + strand, within IAI46_04100at 884.135 kb on + strand, within IAI46_04100at 884.135 kb on + strand, within IAI46_04100at 884.136 kb on - strand, within IAI46_04100at 884.241 kb on + strand, within IAI46_04100at 884.242 kb on - strand, within IAI46_04100at 884.246 kb on + strand, within IAI46_04100at 884.246 kb on + strand, within IAI46_04100at 884.247 kb on - strand, within IAI46_04100at 884.281 kb on + strand, within IAI46_04100

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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881,161 - IAI46_04080 0.82 +0.3
881,170 - IAI46_04080 0.82 +0.3
881,209 - IAI46_04080 0.84 -0.7
881,260 + IAI46_04080 0.86 +0.3
881,261 - IAI46_04080 0.86 +1.3
881,360 + -0.0
881,364 + +0.4
881,364 + -0.2
881,365 - -1.3
881,365 - -0.2
881,365 - -1.3
881,365 - +0.4
881,366 + +0.4
881,366 + +0.3
881,366 + -0.1
881,366 + +1.2
881,366 + +1.4
881,367 - -0.6
881,367 - +0.3
881,367 - +1.3
881,424 - +0.3
881,431 + -1.4
881,432 - +1.0
881,503 + +0.9
881,552 - -0.3
881,592 + -1.0
881,592 + -0.7
881,593 - -0.3
881,607 + -0.2
881,607 + -1.1
881,697 + IAI46_04085 0.20 +0.1
881,725 + IAI46_04085 0.25 +0.4
881,858 + IAI46_04085 0.48 -0.3
881,859 - IAI46_04085 0.48 -0.3
881,935 + IAI46_04085 0.62 -2.1
881,948 + IAI46_04085 0.64 +0.8
881,949 - IAI46_04085 0.64 +2.0
882,015 + IAI46_04085 0.76 -0.2
882,027 - IAI46_04085 0.78 -0.9
882,134 - +0.0
882,152 + +0.0
882,161 - +1.1
882,302 + IAI46_04090 0.13 +0.7
882,302 + IAI46_04090 0.13 +0.0
882,303 - IAI46_04090 0.13 -1.1
882,303 - IAI46_04090 0.13 -0.2
882,314 + IAI46_04090 0.14 +0.6
882,346 - IAI46_04090 0.16 -1.4
882,357 + IAI46_04090 0.17 +0.3
882,358 - IAI46_04090 0.17 -0.5
882,358 - IAI46_04090 0.17 -0.1
882,447 + IAI46_04090 0.25 +0.7
882,448 - IAI46_04090 0.25 -0.3
882,499 + IAI46_04090 0.29 -1.0
882,533 - IAI46_04090 0.32 +0.2
882,533 - IAI46_04090 0.32 +0.2
882,601 + IAI46_04090 0.38 -0.5
882,602 - IAI46_04090 0.38 +0.5
882,602 - IAI46_04090 0.38 -0.0
882,652 - IAI46_04090 0.43 +0.3
882,798 + IAI46_04090 0.55 +0.1
882,798 + IAI46_04090 0.55 +0.7
882,798 + IAI46_04090 0.55 +0.5
882,982 + IAI46_04090 0.71 -0.3
882,983 - IAI46_04090 0.71 +0.6
882,983 - IAI46_04090 0.71 +0.5
882,983 - IAI46_04090 0.71 +0.3
882,983 - IAI46_04090 0.71 +0.0
883,090 - IAI46_04090 0.80 +0.5
883,345 - -0.7
883,347 + -0.2
883,347 + +0.5
883,347 + -0.9
883,347 + -0.1
883,347 + -0.5
883,348 - -0.1
883,348 - +0.7
883,348 - -0.0
883,351 + +0.3
883,352 - +1.2
883,352 - +1.3
883,352 - +0.6
883,352 - +0.6
883,439 + IAI46_04095 0.25 -1.6
883,489 - IAI46_04095 0.36 -1.2
883,571 + IAI46_04095 0.53 +0.2
883,571 + IAI46_04095 0.53 -0.0
883,572 - IAI46_04095 0.53 -0.6
883,738 - IAI46_04095 0.88 -1.2
883,778 - +0.3
883,842 + -0.3
883,878 + IAI46_04100 0.12 -0.2
883,878 + IAI46_04100 0.12 +0.6
883,879 - IAI46_04100 0.12 -0.4
883,887 - IAI46_04100 0.13 -0.8
883,887 - IAI46_04100 0.13 +0.6
883,970 - IAI46_04100 0.25 +0.7
884,012 - IAI46_04100 0.30 +1.3
884,031 - IAI46_04100 0.33 +0.2
884,033 + IAI46_04100 0.33 +0.5
884,034 - IAI46_04100 0.33 +0.2
884,047 + IAI46_04100 0.35 +0.4
884,048 - IAI46_04100 0.35 -0.2
884,116 + IAI46_04100 0.45 -0.2
884,135 + IAI46_04100 0.47 -0.0
884,135 + IAI46_04100 0.47 +0.9
884,136 - IAI46_04100 0.47 -0.3
884,241 + IAI46_04100 0.62 +0.6
884,242 - IAI46_04100 0.62 +1.0
884,246 + IAI46_04100 0.62 -0.2
884,246 + IAI46_04100 0.62 +0.4
884,247 - IAI46_04100 0.62 +0.3
884,281 + IAI46_04100 0.67 +0.3

Or see this region's nucleotide sequence