Strain Fitness in Serratia liquefaciens MT49 around IAI46_04070

Experiment: Cadmium acetate 40 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04065 and IAI46_04070 overlap by 4 nucleotidesIAI46_04070 and IAI46_04075 overlap by 4 nucleotidesIAI46_04075 and IAI46_04080 overlap by 11 nucleotides IAI46_04065: IAI46_04065 - glycosyltransferase family 2 protein, at 876,541 to 878,259 _04065 IAI46_04070: IAI46_04070 - acyl-CoA thioesterase, at 878,256 to 878,684 _04070 IAI46_04075: IAI46_04075 - outer membrane lipoprotein carrier protein LolA, at 878,681 to 879,286 _04075 IAI46_04080: IAI46_04080 - MMPL family transporter, at 879,276 to 881,582 _04080 Position (kb) 878 879Strain fitness (log2 ratio) -2 -1 0 1at 877.363 kb on + strand, within IAI46_04065at 877.446 kb on + strand, within IAI46_04065at 877.462 kb on + strand, within IAI46_04065at 877.463 kb on - strand, within IAI46_04065at 877.463 kb on - strand, within IAI46_04065at 877.463 kb on - strand, within IAI46_04065at 877.610 kb on + strand, within IAI46_04065at 877.654 kb on - strand, within IAI46_04065at 877.747 kb on - strand, within IAI46_04065at 877.814 kb on + strand, within IAI46_04065at 878.068 kb on + strand, within IAI46_04065at 878.167 kb on + strandat 878.168 kb on - strandat 878.264 kb on + strandat 878.264 kb on + strandat 878.265 kb on - strandat 878.348 kb on + strand, within IAI46_04070at 878.348 kb on + strand, within IAI46_04070at 878.348 kb on + strand, within IAI46_04070at 878.348 kb on + strand, within IAI46_04070at 878.352 kb on + strand, within IAI46_04070at 878.352 kb on + strand, within IAI46_04070at 878.352 kb on + strand, within IAI46_04070at 878.353 kb on - strand, within IAI46_04070at 878.362 kb on - strand, within IAI46_04070at 878.403 kb on + strand, within IAI46_04070at 878.403 kb on + strand, within IAI46_04070at 878.404 kb on - strand, within IAI46_04070at 878.433 kb on + strand, within IAI46_04070at 878.433 kb on + strand, within IAI46_04070at 878.434 kb on - strand, within IAI46_04070at 878.434 kb on - strand, within IAI46_04070at 878.449 kb on + strand, within IAI46_04070at 878.449 kb on + strand, within IAI46_04070at 878.450 kb on - strand, within IAI46_04070at 878.468 kb on + strand, within IAI46_04070at 878.575 kb on + strand, within IAI46_04070at 878.576 kb on - strand, within IAI46_04070at 878.594 kb on + strand, within IAI46_04070at 878.597 kb on + strand, within IAI46_04070at 878.597 kb on + strand, within IAI46_04070at 878.597 kb on + strand, within IAI46_04070at 878.597 kb on + strand, within IAI46_04070at 878.597 kb on + strand, within IAI46_04070at 878.597 kb on + strand, within IAI46_04070at 878.598 kb on - strand, within IAI46_04070at 878.654 kb on - strandat 878.654 kb on - strandat 879.148 kb on + strand, within IAI46_04075at 879.148 kb on + strand, within IAI46_04075at 879.178 kb on + strand, within IAI46_04075at 879.178 kb on + strand, within IAI46_04075at 879.179 kb on - strand, within IAI46_04075at 879.179 kb on - strand, within IAI46_04075at 879.205 kb on + strand, within IAI46_04075at 879.235 kb on + strandat 879.235 kb on + strandat 879.236 kb on - strandat 879.394 kb on + strandat 879.434 kb on - strandat 879.478 kb on + strandat 879.535 kb on + strand, within IAI46_04080at 879.536 kb on - strand, within IAI46_04080at 879.536 kb on - strand, within IAI46_04080

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadmium acetate 40 uM, aerobic
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877,363 + IAI46_04065 0.48 +0.4
877,446 + IAI46_04065 0.53 +0.3
877,462 + IAI46_04065 0.54 +0.2
877,463 - IAI46_04065 0.54 +0.0
877,463 - IAI46_04065 0.54 +0.4
877,463 - IAI46_04065 0.54 +0.2
877,610 + IAI46_04065 0.62 +0.6
877,654 - IAI46_04065 0.65 -0.8
877,747 - IAI46_04065 0.70 -0.1
877,814 + IAI46_04065 0.74 -0.7
878,068 + IAI46_04065 0.89 -0.9
878,167 + +0.8
878,168 - -0.6
878,264 + -0.1
878,264 + -0.1
878,265 - +0.2
878,348 + IAI46_04070 0.21 -0.1
878,348 + IAI46_04070 0.21 +0.2
878,348 + IAI46_04070 0.21 +0.5
878,348 + IAI46_04070 0.21 -0.1
878,352 + IAI46_04070 0.22 -0.1
878,352 + IAI46_04070 0.22 -0.4
878,352 + IAI46_04070 0.22 +0.6
878,353 - IAI46_04070 0.23 +0.6
878,362 - IAI46_04070 0.25 +0.7
878,403 + IAI46_04070 0.34 -1.3
878,403 + IAI46_04070 0.34 +0.5
878,404 - IAI46_04070 0.34 +0.1
878,433 + IAI46_04070 0.41 -1.9
878,433 + IAI46_04070 0.41 +0.2
878,434 - IAI46_04070 0.41 +0.3
878,434 - IAI46_04070 0.41 +1.7
878,449 + IAI46_04070 0.45 +0.1
878,449 + IAI46_04070 0.45 +0.1
878,450 - IAI46_04070 0.45 +0.1
878,468 + IAI46_04070 0.49 +0.0
878,575 + IAI46_04070 0.74 +1.3
878,576 - IAI46_04070 0.75 +0.2
878,594 + IAI46_04070 0.79 +0.7
878,597 + IAI46_04070 0.79 -0.6
878,597 + IAI46_04070 0.79 +0.1
878,597 + IAI46_04070 0.79 -0.3
878,597 + IAI46_04070 0.79 -0.1
878,597 + IAI46_04070 0.79 +0.6
878,597 + IAI46_04070 0.79 -0.0
878,598 - IAI46_04070 0.80 -0.4
878,654 - +0.5
878,654 - -0.3
879,148 + IAI46_04075 0.77 -1.5
879,148 + IAI46_04075 0.77 -0.2
879,178 + IAI46_04075 0.82 -0.6
879,178 + IAI46_04075 0.82 -0.1
879,179 - IAI46_04075 0.82 -0.7
879,179 - IAI46_04075 0.82 -0.0
879,205 + IAI46_04075 0.86 +0.9
879,235 + +0.6
879,235 + -0.5
879,236 - +0.5
879,394 + +1.6
879,434 - -0.5
879,478 + +0.5
879,535 + IAI46_04080 0.11 +0.0
879,536 - IAI46_04080 0.11 +0.2
879,536 - IAI46_04080 0.11 +0.8

Or see this region's nucleotide sequence